Gene

KWMTBOMO14866  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012165

Annotation

PREDICTED:_WD_repeat-containing_protein_74_[Bombyx_mori]

Location

Bomo_Chr24(+):16703766-16712944      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.439 Nuclear   Reliability : 2.089

CDS

ATGGTGGTTAATGAAGATTCTCAGTTAGACATATTCGTGGGTAGTACGATTGGATCGTTCAAGCATGTAAAATATTACACGGACAACACGAAAAACAACAAGAAATGCATAGAAAACTTGGTCGACGTTAAATCTTTACAGAAAGGCGAAGGTATAACTTGCATGGAATGGGGTAACAAAGAACAAACTGAAATTTTGATTGGAAAGAAAAACCAACAGATACAAGTTTACCACACTTTACAAGGAAACAAGTGTATTTATACAGCCGACTATGCAGAAGGACATGTCGTAGGTCTGGGGAAAGTGAACAATACATTGGTATCAGCCGTGTCAAGTGGCACCGTCAGAGTATGGGGCGATGATGCGAATGAAGATATTTTCACTGGCGGGAAGCTGGATAGGATGAGGGTCTGCAGCGATGATACATTATTTGCTACAGGCGGCGAAGAAAACGATTTGAAAGTTTGGCGCGTCGGCGAGTCCCAGCCAACGTTCTCTGCCAAGAACTTGGCCCACGATTGGCTCCAACTACGCCAGCCGGTCTGGGTGACCGACCTGGTGTTTGTCCCCGGCGAGGGGGGCAGGGTGGTAGCCGTCTGCTCCCGACACGGCTACGTGAGATTGTACGACACTCGCTCGCAAAGAAGGCCGGTCCAGAACGTGACCTTCGATCTGGCGGCCACTTGCATCGCGCCCAGCATCAGCACGCGTCTGGCGTTGGTGGGGTTCGCCCGGGGACAGCTCCGGCAGGTGGAACTGCGGCTGGGGCGCCCCGACAAGGGGTACAAGGGGGGTGCGGGGGCGGTGACGGGCGCGGGGGCGGGGGGCGGCCGCGTGCTCAGTACCTCCCTGGACAGACATCTATACGTGCACCGATACAGCGACAAGGAACTCGTTCATAAGGGACCCCGGACCGGTCAGCAAGAGACCCAAACCCTCGCTGGAGGGCAGCACCGAAGTGGTGGAAGACACGGAAGCGGCCATAGCGAAGCTCCTCCGCAGCACGGAGAAGACCAGGAAGAGGAGGGAGCAGCGGAAGCGGGAGAAGAAAAAGAAGAGCGTCTTTCATAA

Protein

MVVNEDSQLDIFVGSTIGSFKHVKYYTDNTKNNKKCIENLVDVKSLQKGEGITCMEWGNKEQTEILIGKKNQQIQVYHTLQGNKCIYTADYAEGHVVGLGKVNNTLVSAVSSGTVRVWGDDANEDIFTGGKLDRMRVCSDDTLFATGGEENDLKVWRVGESQPTFSAKNLAHDWLQLRQPVWVTDLVFVPGEGGRVVAVCSRHGYVRLYDTRSQRRPVQNVTFDLAATCIAPSISTRLALVGFARGQLRQVELRLGRPDKGYKGGAGAVTGAGAGGGRVLSTSLDRHLYVHRYSDKELVHKGPRTGQQETQTLAGGQHRSGGRHGSGHSEAPPQHGEDQEEEGAAEAGEEKEERLS

Uniprot

A0A2A4JIX2   H9JRK5   A0A2H1VH07   S4PBE3   A0A0N1INA5   A0A212ESE2   + More
A0A0N0PED3   A0A1B6CVN9   A0A1S3DJJ9   A0A1S4EP51   A0A0V0GB34   A0A023FA33   A0A224XT71   A0A0P4VGA4   R4G809   A0A1B6LEY6   E0VVJ3   A0A026WWE3   R7TR62   A0A1B6F062   K7ITM1   A0A232EUT7   Q6DDA2   A2VD86   A0A1L8GJW2   A0A0P6GYT7   A0A0P5HI51   A0A0P6F079   A0A0P6C0L7   A0A0P5PYK3   A0A0P6I7W4   A0A0P5YK56   A0A067R7H9   A0A0P5B1K3   E9FX62   A0A0M8ZUE6   A0A1B0CZG1   A0A0P5L2T1   A0A0P5YCW6   A0A2J7Q4B7   A0A0P6DYM2   E2AIU1   V9KY75   A0A1S3HAN6   U5EW31   K7FDE6   C3XZK4   A0A151MTE9   A0A1U7SMK4   T1ITQ1   A0A210PSD0   A0A088A269   E2BA52   A0A310SGS2   V9L1Q8   A0A0A9WUP3   A0A0K8S7G9   A0A2D0SP32   A0A2D0SPP0   W5UDN5   H3A1N8   K1P1Q8   A0A2J7Q4C1   A0A0L7RFR9   A0A146LAP7   M7B1B6   A0A2L2Y155   K1QJ98   A0A0P5EA88   A0A0P5YMU0   T1E434   A0A2A3E9Q5   T1J0T6   A0A0P5RQA6  

Pubmed

19121390    23622113    26354079    22118469    25474469    27129103    + More
20566863    24508170    23254933    20075255    28648823    27762356    24845553    21292972    20798317    24402279    17381049    18563158    22293439    28812685    25401762    23127152    9215903    22992520    26823975    23624526    26561354    23758969   

EMBL

NWSH01001406    PCG71352.1    BABH01031773    BABH01031774    ODYU01002508    SOQ40097.1    + More
GAIX01004661    JAA87899.1    KQ458863    KPJ04711.1    AGBW02012817    OWR44400.1    KQ459988    KPJ18780.1    GEDC01019844    JAS17454.1    GECL01000920    JAP05204.1    GBBI01000929    JAC17783.1    GFTR01005265    JAW11161.1    GDKW01003373    JAI53222.1    ACPB03004692    GAHY01001792    JAA75718.1    GEBQ01017719    JAT22258.1    DS235812    EEB17399.1    KK107105    EZA59449.1    AMQN01012467    AMQN01012468    KB309539    ELT93981.1    GECZ01026181    JAS43588.1    NNAY01002087    OXU22120.1    BC077693    CR761697    AAH77693.1    CAJ83923.1    BC129603    AAI29604.1    CM004472    OCT84103.1    GDIQ01047929    JAN46808.1    GDIQ01227162    JAK24563.1    GDIQ01067615    JAN27122.1    GDIP01006625    JAM97090.1    GDIQ01121646    JAL30080.1    GDIQ01015309    JAN79428.1    GDIP01070656    JAM33059.1    KK852655    KDR19313.1    GDIP01195396    JAJ28006.1    GL732526    EFX88020.1    KQ435881    KOX69813.1    AJVK01020757    GDIQ01200812    GDIQ01193265    JAK50913.1    GDIP01059514    JAM44201.1    NEVH01018385    PNF23432.1    GDIQ01070766    JAN23971.1    GL439905    EFN66620.1    JW871124    AFP03642.1    GANO01001605    JAB58266.1    AGCU01052713    GG666475    EEN66525.1    AKHW03005097    KYO27786.1    JH431494    NEDP02005528    OWF39391.1    GL446664    EFN87461.1    KQ764001    OAD54650.1    JW872334    AFP04852.1    GBHO01032488    JAG11116.1    GBRD01016599    JAG49227.1    JT412776    AHH39990.1    AFYH01015686    AFYH01015687    JH821810    EKC17777.1    PNF23433.1    KQ414601    KOC69680.1    GDHC01013225    JAQ05404.1    KB586437    EMP25858.1    IAAA01006602    LAA01919.1    JH818661    EKC28945.1    GDIP01144346    JAJ79056.1    GDIP01056952    JAM46763.1    GAAZ01002941    JAA95002.1    KZ288311    PBC28450.1    AFFK01020674    GDIQ01098450    JAL53276.1   

Proteomes

UP000218220    UP000005204    UP000053268    UP000007151    UP000053240    UP000079169    + More
UP000015103    UP000009046    UP000053097    UP000014760    UP000002358    UP000215335    UP000186698    UP000027135    UP000000305    UP000053105    UP000092462    UP000235965    UP000000311    UP000085678    UP000007267    UP000001554    UP000050525    UP000189705    UP000242188    UP000005203    UP000008237    UP000221080    UP000008672    UP000005408    UP000053825    UP000031443    UP000242457   

PRIDE

H9JRK5   

Pfam

PF00400   WD40        + More
PF00241   Cofilin_ADF
PF00060   Lig_chan
PF00089   Trypsin

Interpro

IPR001680   WD40_repeat        + More
IPR037379   WDR74/Nsa1       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR011171   GMF       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR002108   ADF-H       
IPR001320   Iontro_rcpt       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       
IPR033116   TRYPSIN_SER       

SUPFAM

SSF50978   SSF50978        + More
SSF50494   SSF50494       

Gene 3D

2.130.10.10     3.40.20.10    

CDD

cd11283  ADF_GMF-beta_like
cd00190  Tryp_SPc

ProteinModelPortal

A0A2A4JIX2   H9JRK5   A0A2H1VH07   S4PBE3   A0A0N1INA5   A0A212ESE2   + More
A0A0N0PED3   A0A1B6CVN9   A0A1S3DJJ9   A0A1S4EP51   A0A0V0GB34   A0A023FA33   A0A224XT71   A0A0P4VGA4   R4G809   A0A1B6LEY6   E0VVJ3   A0A026WWE3   R7TR62   A0A1B6F062   K7ITM1   A0A232EUT7   Q6DDA2   A2VD86   A0A1L8GJW2   A0A0P6GYT7   A0A0P5HI51   A0A0P6F079   A0A0P6C0L7   A0A0P5PYK3   A0A0P6I7W4   A0A0P5YK56   A0A067R7H9   A0A0P5B1K3   E9FX62   A0A0M8ZUE6   A0A1B0CZG1   A0A0P5L2T1   A0A0P5YCW6   A0A2J7Q4B7   A0A0P6DYM2   E2AIU1   V9KY75   A0A1S3HAN6   U5EW31   K7FDE6   C3XZK4   A0A151MTE9   A0A1U7SMK4   T1ITQ1   A0A210PSD0   A0A088A269   E2BA52   A0A310SGS2   V9L1Q8   A0A0A9WUP3   A0A0K8S7G9   A0A2D0SP32   A0A2D0SPP0   W5UDN5   H3A1N8   K1P1Q8   A0A2J7Q4C1   A0A0L7RFR9   A0A146LAP7   M7B1B6   A0A2L2Y155   K1QJ98   A0A0P5EA88   A0A0P5YMU0   T1E434   A0A2A3E9Q5   T1J0T6   A0A0P5RQA6  

PDB

5SUI     E-value=1.0756e-05,     Score=117

KEGG

101740403    K14841 ribosome biogenesis protein NSA1 | (RefSeq) WD repeat-containing protein 74

GO

GO:0042273   GO:0005730   GO:0016021   GO:0030687   GO:0034316   GO:0003779   GO:0071933   GO:0006364   GO:0000176   GO:0004970   GO:0004252   GO:0005515   GO:0016055   GO:0015986   GO:0006508   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR16038  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10822

Exp number, first 60 AAs:

0.00178

Total prob of N-in:

0.01393

outside

1  -  356

 

 

Pi

22.150734

Theta

202.349113

Tajima's D

1.188931

CLR

0.199624

CSRT

0.712314384280786

Interpretation

Uncertain