Gene

KWMTBOMO14862  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012163

Annotation

PREDICTED:_U4/U6_small_nuclear_ribonucleoprotein_Prp3_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr24(+):16640926-16662072      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.952

CDS

ATGGCACTTCAGCTGTCCCGTCGCGAGGTAGAGGAACTCCGGTCATCAATAGACCGTGCCATATACAGGACTATAGGAAAATCGGATAACTCAATTCTATCGACTGTTTCGTCGTGTTTGACGAACGGATATGAACGTAGAAAAATTATTGACCGACTTTCATCGCACATAGACTCCAAAAAGGCAAGCAAACTAACCGATAAGGTCATAGCATTGGCCCAGGAACTGATAACGTCATCAAAAACTTCATCGAAAAGGAAACATGAGAGTGACAGAGATAGAGATGGTAAGAGATCTCGGTACGAAGGTTCAAAGCAAGATGAGAAAGTTTATGTGGAGAAAAAAGATGTGGAGGAAAAGAATGGAACTGATGATCTTCCCGCTATTCCCGAAGGAGAGACTCCAGGATCGAAGATGGCTATCCTGAGTGCAGACAGGATTAAGTTAATGATGGCCAACGCTCAGAAAGAGATAGAGGAACGCAAGAGAGCTCTTCAAGTGCTGAAGGGGGTTGAGACCAAACCGAGTGTTAATGCTGCGGTGGCTGCGGCCCAACACCTGAAAGTGCAGATGCAGCAGAACAATGCAATACCCCCACCGAGTGTAATCAAACCTGTACTGTATTCAAAACCTGAAACTTTGCCGTTATCACGCGAAGAATTGGAGAAGCAAAGGAAGATAGCTGAGCTGCAAGCGAGGATACAGCGGAAACTTGCAGGGGGTGCCTTATCATCGACGCCGGGGTCGGGACCTGCCCCCCTGATCTTGGACCGTGAGGGTCGCACCGTGGACACCACGGGCAGGATAGTTCAACTCACCCACGTGGCGCCCACGCTTCAGGCGAACATAAGAGCGAAGAGACGTGAGGAGTTCAAAGCTCAGTTGTCCGGTCCCACTGAGGAGGTGGGTCCGGAGTCGTCCCGCTGGGTGGACCCGCGCGTGTCCTCGCGCCCCCACGCGCGCGCCAAGCGGCCCCTGCGCTTCCACGAGCCCGGCAAGTTCCGCCAGATGGCTGAACGGCTAAGGATGAAGGCGCAACTGGAGAAGCTGCAGAACGAGATATCCCAGATAGCGCGGAAGACCGGCATCTCGTCCGCCACCAGGTTAGCGCTGCTGGCGGCCGACGCGCCCGACGCCGACGGACCCCCCGACGTGGAATGGTGGGACAGCGTGATCCTGATGACGGCGGACGAGCGGGAGACGAAGCGGCGCGGGGCCGGCGCTGATGGGCGCACGGACGAGCAGCGCGTGGACGCCTGCAACACGGGCGAGGACGACATAGTGGACAACATCAACGAGGAGGCCATCACCAACCTCGTGGAGCACCCGCAGCAGCTCAGGCCGCCCACGGAACCTCTCAAGCCGACGTTCATGCCGGTCTTCCTGACGAAGAAGGAGAGGAAGAAACTGCGACGCCAGAGCAGACGGGAGGCTTGGAAGGAGGAGCAGGAGAAGGTCAGACTCGGACTGGAAGCGCCACCAGAACCAAAGCTCAGGATCTCGAATCTGATGCGAGCTTTAGGCACCGAAGCGGTGCAGGACCCCACGGCGATCGAGGCCAAGGTCAGGGAGCAGATTGCGAAGAGACAGAAGACGCATCTGGAAGCGAACAAGGCGAGAGCTCTCACCAAGGAACAGAAGAGGGAGAAGGTTGACCGCAAGCTGCAGGAAGACACGTCGGCCGGCGTCCACGTGGCCGTGTACAGGATCCGTGATCTGTTCGAGTGCGCGTCGGCCAAGTTCAAGGTCGAGGTGAACGCCCAGCAGCTGCACATGAGCGGCTGCGTGCTGCTGCACCGGGGCTGCTGCGTGGTCGTGGCCGAGGGGGGCCCCCGCCAGCACGCCAAGTACAAGCGGTTGATGCTGCACCGCATTAAGTGGGAGGAGGACACCGTTAAGGACGCCGAAGGCTGCGACGTGCCCAACTCCTGTCACCTGGTCTGGGAGGGCACCACCAAACAAAGGGCCTTCGGGGAGATCAAGTTTAAGGTGGTACCGACAGAGAAACAAGCGCGCGAGCATTTCCAAAAACACGGCGTCGAACATTACTGGGACCTGGCGTACAGCAGTGCGGTCCTCGGACCCACTATAGAGGAGCCGTGA

Protein

MALQLSRREVEELRSSIDRAIYRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVIALAQELITSSKTSSKRKHESDRDRDGKRSRYEGSKQDEKVYVEKKDVEEKNGTDDLPAIPEGETPGSKMAILSADRIKLMMANAQKEIEERKRALQVLKGVETKPSVNAAVAAAQHLKVQMQQNNAIPPPSVIKPVLYSKPETLPLSREELEKQRKIAELQARIQRKLAGGALSSTPGSGPAPLILDREGRTVDTTGRIVQLTHVAPTLQANIRAKRREEFKAQLSGPTEEVGPESSRWVDPRVSSRPHARAKRPLRFHEPGKFRQMAERLRMKAQLEKLQNEISQIARKTGISSATRLALLAADAPDADGPPDVEWWDSVILMTADERETKRRGAGADGRTDEQRVDACNTGEDDIVDNINEEAITNLVEHPQQLRPPTEPLKPTFMPVFLTKKERKKLRRQSRREAWKEEQEKVRLGLEAPPEPKLRISNLMRALGTEAVQDPTAIEAKVREQIAKRQKTHLEANKARALTKEQKREKVDRKLQEDTSAGVHVAVYRIRDLFECASAKFKVEVNAQQLHMSGCVLLHRGCCVVVAEGGPRQHAKYKRLMLHRIKWEEDTVKDAEGCDVPNSCHLVWEGTTKQRAFGEIKFKVVPTEKQAREHFQKHGVEHYWDLAYSSAVLGPTIEEP

Uniprot

H9JRK3   A0A0N0PA47   A0A212EYQ2   A0A0T6B316   A0A1W4W5F5   A0A1Y1KF46   + More
D6WBT3   A0A154PLF8   A0A067RKW1   A0A2A3EKW9   A0A087ZTY5   E2AB89   A0A0J7KV41   A0A310SWP3   A0A2J7Q6E0   Q16P69   A0A0N0U5W3   A0A158NYM0   A0A026WCF1   A0A195DEI9   A0A151WK86   A0A195CFF8   A0A182GW90   B0WFV6   A0A0L7RI44   A0A0C9PU88   E2B9D0   T1PI01   A0A1Q3EWJ2   A0A0A1WJF6   W8BRE3   A0A034WGB4   K7J6K3   A0A195BS51   A0A034WFA1   A0A232F0H9   A0A1I8NWM7   A0A1B0A6A0   A0A1A9Y2T9   A0A2M4BFL8   A0A1B0AWD4   A0A1B0FEZ3   A0A1A9VKW5   A0A0L0BNG6   W5JX69   A0A2M4APY7   A0A1Y1KMQ2   A0A1I8M8Y6   A0A1A9WSR4   F4W9P9   A0A195FGR7   A0A1B0CKP2   A0A2S2QBA2   A0A0A1XA67   A0A1I8NWN0   A0A224XG85   W8BX98   A0A023F2J9   A0A2H8TLC1   A0A182IZR2   B4ML95   B4IIS2   B4L0W5   B4LBL7   B3M8T4   A0A0Q9WPC4   A0A0Q9XR12   B4QRC8   Q9VW52   A0A1W4W6B9   A0A0Q9WU09   B3NE03   B4PFW5   A0A182YDW1   A0A084VJH2   Q2LYV5   B4H035   A0A0A9W7U3   A0A3B0J5J8   N6UNA6   A0A1L8DGI3   N6TQT2   A0A1J1HE94   A0A0J9RYA9   A0A0P8XW31   Q8MRG6   B4IXN8   A0A1W4VTR7   A0A0Q5UGC8   A0A0R1E0P9   A0A182W7Z7   A0A0M3QWS9   A0A182N8D3   N6UQ17   T1I1M9   A0A182JR22   A0A069DV86   V5IG47   T1J0D7  

Pubmed

19121390    26354079    22118469    28004739    18362917    19820115    + More
24845553    20798317    17510324    21347285    24508170    26483478    25315136    25830018    24495485    25348373    20075255    28648823    26108605    20920257    23761445    21719571    25474469    17994087    18057021    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    25244985    24438588    15632085    25401762    26823975    23537049    26109357    26109356    26334808    25765539   

EMBL

BABH01031780    BABH01031781    BABH01031782    BABH01031783    BABH01031784    BABH01031785    + More
KQ458863    KPJ04715.1    AGBW02011451    OWR46626.1    LJIG01016025    KRT81839.1    GEZM01085211    GEZM01085207    JAV60122.1    KQ971314    EEZ97870.1    KQ434968    KZC12705.1    KK852411    KDR24472.1    KZ288227    PBC31836.1    GL438234    EFN69365.1    LBMM01002796    KMQ94352.1    KQ759849    OAD62566.1    NEVH01017533    PNF24142.1    CH477792    EAT36165.1    KQ435752    KOX76182.1    ADTU01000683    ADTU01000684    KK107321    EZA52724.1    KQ980979    KYN10839.1    KQ983012    KYQ48289.1    KQ977876    KYM99051.1    JXUM01092887    KQ564017    KXJ72933.1    DS231921    EDS26491.1    KQ414588    KOC70494.1    GBYB01004918    JAG74685.1    GL446499    EFN87681.1    KA648442    AFP63071.1    GFDL01015358    JAV19687.1    GBXI01015647    JAC98644.1    GAMC01002660    JAC03896.1    GAKP01006144    JAC52808.1    AAZX01001310    KQ976423    KYM88832.1    GAKP01006142    JAC52810.1    NNAY01001410    OXU24069.1    GGFJ01002699    MBW51840.1    JXJN01004653    CCAG010017197    JRES01001600    KNC21577.1    ADMH02000009    ETN68110.1    GGFK01009534    MBW42855.1    GEZM01085210    JAV60117.1    GL888033    EGI69035.1    KQ981606    KYN39432.1    AJWK01016490    GGMS01005803    MBY75006.1    GBXI01006098    JAD08194.1    GFTR01007598    JAW08828.1    GAMC01002658    JAC03898.1    GBBI01002870    JAC15842.1    GFXV01003142    MBW14947.1    AXCP01007317    CH963847    EDW73353.1    CH480844    EDW49843.1    CH933809    EDW19215.1    KRG06551.1    CH940647    EDW70827.1    CH902618    EDV41085.1    KRF97749.1    KRG06552.1    CM000363    CM002912    EDX11141.1    KMZ00638.1    AE014296    AAF49097.1    KRF85137.1    CH954178    EDV52427.1    CM000159    EDW95262.1    ATLV01013567    KE524868    KFB38116.1    CH379069    EAL29755.1    CH479199    EDW29612.1    GBHO01040118    GBHO01013534    GBRD01005039    GDHC01015711    GDHC01007554    JAG03486.1    JAG30070.1    JAG60782.1    JAQ02918.1    JAQ11075.1    OUUW01000002    SPP77264.1    APGK01009162    APGK01024977    KB740570    KB737872    KB632375    ENN80207.1    ENN82862.1    ERL93888.1    GFDF01008587    JAV05497.1    APGK01009169    KB737873    ENN82859.1    CVRI01000001    CRK86288.1    KMZ00639.1    KPU78915.1    AY119640    AAM50294.1    AAN11640.1    CH916366    EDV97500.1    KQS44273.1    KRK02334.1    CP012525    ALC44639.1    ENN82861.1    ACPB03016272    GBGD01000911    JAC87978.1    GANP01007317    JAB77151.1    JH431734   

Proteomes

UP000005204    UP000053268    UP000007151    UP000192223    UP000007266    UP000076502    + More
UP000027135    UP000242457    UP000005203    UP000000311    UP000036403    UP000235965    UP000008820    UP000053105    UP000005205    UP000053097    UP000078492    UP000075809    UP000078542    UP000069940    UP000249989    UP000002320    UP000053825    UP000008237    UP000095301    UP000002358    UP000078540    UP000215335    UP000095300    UP000092445    UP000092443    UP000092460    UP000092444    UP000078200    UP000037069    UP000000673    UP000091820    UP000007755    UP000078541    UP000092461    UP000075880    UP000007798    UP000001292    UP000009192    UP000008792    UP000007801    UP000000304    UP000000803    UP000192221    UP000008711    UP000002282    UP000076408    UP000030765    UP000001819    UP000008744    UP000268350    UP000019118    UP000030742    UP000183832    UP000001070    UP000075920    UP000092553    UP000075884    UP000015103    UP000075881   

PRIDE

H9JRK3    Q9VW52    Q8MRG6    V5IG47   

Pfam

PF08572   PRP3        + More
PF06544   DUF1115
PF01480   PWI
PF03098   An_peroxidase
PF11952   XTBD

Interpro

IPR013881   Pre-mRNA_splic_Prp3        + More
IPR010541   DUF1115       
IPR027104   Prp3       
IPR002483   PWI_dom       
IPR010255   Haem_peroxidase_sf       
IPR037120   Haem_peroxidase_sf_animal       
IPR019791   Haem_peroxidase_animal       
IPR021859   XTBD       

SUPFAM

SSF48113   SSF48113       

Gene 3D

1.10.640.10    

ProteinModelPortal

H9JRK3   A0A0N0PA47   A0A212EYQ2   A0A0T6B316   A0A1W4W5F5   A0A1Y1KF46   + More
D6WBT3   A0A154PLF8   A0A067RKW1   A0A2A3EKW9   A0A087ZTY5   E2AB89   A0A0J7KV41   A0A310SWP3   A0A2J7Q6E0   Q16P69   A0A0N0U5W3   A0A158NYM0   A0A026WCF1   A0A195DEI9   A0A151WK86   A0A195CFF8   A0A182GW90   B0WFV6   A0A0L7RI44   A0A0C9PU88   E2B9D0   T1PI01   A0A1Q3EWJ2   A0A0A1WJF6   W8BRE3   A0A034WGB4   K7J6K3   A0A195BS51   A0A034WFA1   A0A232F0H9   A0A1I8NWM7   A0A1B0A6A0   A0A1A9Y2T9   A0A2M4BFL8   A0A1B0AWD4   A0A1B0FEZ3   A0A1A9VKW5   A0A0L0BNG6   W5JX69   A0A2M4APY7   A0A1Y1KMQ2   A0A1I8M8Y6   A0A1A9WSR4   F4W9P9   A0A195FGR7   A0A1B0CKP2   A0A2S2QBA2   A0A0A1XA67   A0A1I8NWN0   A0A224XG85   W8BX98   A0A023F2J9   A0A2H8TLC1   A0A182IZR2   B4ML95   B4IIS2   B4L0W5   B4LBL7   B3M8T4   A0A0Q9WPC4   A0A0Q9XR12   B4QRC8   Q9VW52   A0A1W4W6B9   A0A0Q9WU09   B3NE03   B4PFW5   A0A182YDW1   A0A084VJH2   Q2LYV5   B4H035   A0A0A9W7U3   A0A3B0J5J8   N6UNA6   A0A1L8DGI3   N6TQT2   A0A1J1HE94   A0A0J9RYA9   A0A0P8XW31   Q8MRG6   B4IXN8   A0A1W4VTR7   A0A0Q5UGC8   A0A0R1E0P9   A0A182W7Z7   A0A0M3QWS9   A0A182N8D3   N6UQ17   T1I1M9   A0A182JR22   A0A069DV86   V5IG47   T1J0D7  

PDB

6QX9     E-value=2.83468e-121,     Score=1116

KEGG

101735962    K12843 U4/U6 small nuclear ribonucleoprotein PRP3 | (RefSeq) U4/U6 small nuclear ribonucleoprotein P

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0046540   GO:0000398   GO:0006979   GO:0020037   GO:0004601   GO:0031935   GO:0071011   GO:0005681   GO:0005634   GO:0003723  

PANTHER

PTHR14212  

Length:

700

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00252

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.00021

outside

1  -  700

 

 

Pi

156.535847

Theta

140.33833

Tajima's D

0.573336

CLR

0.7373

CSRT

0.540422978851058

Interpretation

Uncertain