Gene

KWMTBOMO14861  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012191

Annotation

PREDICTED:_U4/U6_small_nuclear_ribonucleoprotein_Prp4_[Papilio_xuthus]

Location

Bomo_Chr24(-):16625897-16640015      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.334

CDS

ATGTCTGATGACGAAGATATCGCGTATCTAAAGAAACAGAAGCAGGTACATTATGGGTCGCTGGAAGAACAGGAAAAGGCGAGACTAGCAGCCTTAGCTGCAGCCGCCAAAGAGGGAGCAGAGGACCCCGGCGGCAAAGAACTAGGAGACATACAAATATCTAACGAGTATATGGAGTTAGAAGAAGAAATATCCAGAGATAAGAAGGCACTACTTGAAGAGTTTGAGAGGAGACGCAAAGCAAGGCAACTGAATGTGTCCACTGATGATGATGAGGTAAGGAGAAGCTTACGGCAGTTGGGTGAGCCTGTATGCCTGTTCGGAGAGGGACCGGCCGAGAGGAGAGTCAGATTAAGGGATCTGTTAAGCTATCTCGGCGAAGATGCTATCAATAAGAAGCTAGAAGAGGAAGAAGCACGCCTGGAAAGAGACAGAGGTAGAGAAGGTACCTGGTACCACGAAGGTCCCCCGACCTTGAGGCAAGCGAGGATTTGGATAGCCAGGTACTCCCTGCCTAACGCCAAAAAAAGGCTAAACAAAGCCCGCGAGGAACTCAAGTTGGCTGGCAGTGTGCGCGCCGCCGCTAAGCAGGAGTCGCAACGGAAGGCGTCTGCCTTTAGCATTTACTGCAGCCAGATCGGGGACACGAGGCCGCTGAGCTTCTGCAGGTTCAGCCAGGACAGCAAGATGCTGATCACTTCGAGCTGGTCAGGGCTGGTTAAGGTCTGGTCGGTGCCGGACTGCGCCCCCCTGCAGGTGCTCAAGGGCCACACTTGCAACGTGAGCAGCGCGACCTTCCACCCGAAGGCGGAACTGCCCTCGCATTTCCGGCAAAAGGTGAACGTAACTAATGGGGACGCGATGGAGGCGGACGGCTCGGACGACGACAAGTCTGCCGTTTGCACGATGGCTTCGTGCGCGTACGACGGTACCGTCCACCTGTGGAACTTTGCGAGCGAATCCCCCATGGCGTCGTTGCCGGGACACAGTCCGCACCGCGTGTCCCGGGCAGAGTTCCACCCCTCGGGGCGGTTCCTCGCGACGACGGTCTTCGATCACTCCTGGAGGCTGTGGGACTTGGAGACAGCGACCGAAGTATTGCACCAGGAGGGTCACGCTAAGCCGGTCTATAGTATAGCTTTCCAGTGCGACGGGTCCCTGGCCGTCACCGGCGGCATGGACGCTTTCGGTCGAGTGTGGGACCTCCGCACGGGTCGCTGCGTGATGTTCCTGGAGGGTCACCTGGGTCCCGTGCTGGGGACGGACTGGTCCCCGGCTGGACACTGCCTCGCCACCGCCGCCGGAGACCACCAGACCAAGATCTGGGACCTCCGGAGGCGCTCGTGTCTCTACACGGTCCCGGCTCACGCGCATCTGGTCAGCGACGTCCGATACCAACGAAGCCACGGGCACTTCCTACTAACGGCTTCGTACGACCGGAGCGCGAAGCTGTGGTCCAACCCGGCCTGGCACCCACTGCGGACCCTCAGCGGACACGACAACAAGGTGATGAGCGCGGACATATCTGGGGACAGCAAACACGTGGCCACGTGCTCCTACGACCGGACCTTCAAGTTGTGGGCTCCGGAGTTGATATAA

Protein

MSDDEDIAYLKKQKQVHYGSLEEQEKARLAALAAAAKEGAEDPGGKELGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRDLLSYLGEDAINKKLEEEEARLERDRGREGTWYHEGPPTLRQARIWIARYSLPNAKKRLNKAREELKLAGSVRAAAKQESQRKASAFSIYCSQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGHTCNVSSATFHPKAELPSHFRQKVNVTNGDAMEADGSDDDKSAVCTMASCAYDGTVHLWNFASESPMASLPGHSPHRVSRAEFHPSGRFLATTVFDHSWRLWDLETATEVLHQEGHAKPVYSIAFQCDGSLAVTGGMDAFGRVWDLRTGRCVMFLEGHLGPVLGTDWSPAGHCLATAAGDHQTKIWDLRRRSCLYTVPAHAHLVSDVRYQRSHGHFLLTASYDRSAKLWSNPAWHPLRTLSGHDNKVMSADISGDSKHVATCSYDRTFKLWAPELI

Uniprot

H9JRN1   S4P9T3   A0A212EYU4   A0A067R098   A0A0L7RBM7   A0A2J7QQV7   + More
A0A154PLZ8   A0A069DUW1   A0A023F961   A0A0J7L4G9   E2AXK2   A0A224XNB9   R4G4V5   A0A0A9YDH1   A0A2A3ENS2   F4W7W5   A0A088A7Q7   A0A195BR78   A0A158NDV2   E2C5H4   A0A195ER82   A0A0K8TD21   A0A195D7U1   A0A195C712   E9IB39   A0A151X4G7   D6WBF5   A0A1W4WVT3   A0A0C9PRS5   A0A310SFG1   A0A1B6D3A3   A0A0T6B1D3   A0A0P4VTL6   A0A026WCC1   E0W1Z2   J3JTE5   J9JV38   A0A2S2R7U7   A0A2H1VWW2   A0A2H8TDM6   A0A131XR90   A0A232EW98   A0A2P6KMS6   K7INN7   A0A224Z4R2   A0A131Z4M5   V5IIJ2   A0A1E1XG00   T1J785   A0A1B0D3J2   G3MF20   A0A023GKZ9   A0A1Y1ND50   A0A2L2YG44   Q16U64   A0A087TNU8   A0A182HCE2   A0A034VMW8   A0A0K8VBS3   B4LFC6   A0A0A1WHH1   W8C589   B4KZX2   A0A1A9XJH9   A0A1B0AY53   A0A1S3K7Z1   A0A1A9WTI4   A0A1L8DGT5   A0A2R5L501   A0A0M4EH75   A0A1B0G260   A0A1A9UJ83   A0A1B0A6K4   B4J363   A0A1Z5KVU0   A0A2T7NLV5   A0A1Q3F461   B3M4J5   A0A3B0KL76   A0A1I8NU86   B0WY20   A0A3B0KTT9   B3NHU2   Q2LZI7   B4N6E9   A0A1W4W3E4   A0A0L8H6D3   A0A293LKA3   A0A1I8MVC5   V4ACK7   A0A1L8F5Q2   Q8T767   A0A0L0C9T3   A0A0P7WRL1   V9KI05   A0A147AL31   T1E5A6   A0A1D2N9E3   A0A3M0IW76   A0A2C9JQQ6  

Pubmed

19121390    23622113    22118469    24845553    26334808    25474469    + More
20798317    25401762    26823975    21719571    21347285    21282665    18362917    19820115    27129103    24508170    30249741    20566863    22516182    23537049    28049606    28648823    20075255    28797301    26830274    25765539    28503490    22216098    28004739    26561354    17510324    26483478    25348373    17994087    25830018    24495485    28528879    15632085    25315136    23254933    27762356    11967531    26108605    24402279    23758969    27289101    15562597   

EMBL

BABH01031785    BABH01031786    BABH01031787    BABH01031788    BABH01031789    GAIX01003594    + More
JAA88966.1    AGBW02011451    OWR46627.1    KK852805    KDR16117.1    KQ414617    KOC68264.1    NEVH01012082    PNF30969.1    KQ434977    KZC12853.1    GBGD01001164    JAC87725.1    GBBI01000681    JAC18031.1    LBMM01000770    KMQ97531.1    GL443590    EFN61840.1    GFTR01006905    JAW09521.1    ACPB03006429    GAHY01000426    JAA77084.1    GBHO01014461    GDHC01005065    JAG29143.1    JAQ13564.1    KZ288203    PBC33350.1    GL887888    EGI69635.1    KQ976424    KYM88464.1    ADTU01013028    GL452770    EFN76787.1    KQ981993    KYN30770.1    GBRD01002791    JAG63030.1    KQ981153    KYN08955.1    KQ978251    KYM95953.1    GL762107    EFZ22214.1    KQ982548    KYQ55261.1    KQ971312    EEZ97889.1    GBYB01004063    JAG73830.1    KQ773785    OAD52350.1    GEDC01017134    GEDC01007949    JAS20164.1    JAS29349.1    LJIG01016423    KRT80647.1    GDKW01000733    JAI55862.1    KK107274    QOIP01000008    EZA53715.1    RLU19173.1    DS235873    EEB19586.1    BT126501    KB632375    AEE61465.1    ERL93873.1    ABLF02039936    GGMS01016888    MBY86091.1    ODYU01004936    SOQ45320.1    GFXV01000411    MBW12216.1    GEFH01000500    JAP68081.1    NNAY01001889    OXU22630.1    MWRG01008508    PRD27626.1    GFPF01013019    MAA24165.1    GEDV01002204    JAP86353.1    GANP01003092    JAB81376.1    GFAC01000995    JAT98193.1    JH431916    AJVK01023579    AJVK01023580    JO840471    AEO32088.1    GBBM01000851    JAC34567.1    GEZM01007001    JAV95488.1    IAAA01026437    IAAA01026438    LAA07102.1    CH477631    EAT38069.1    KK116096    KFM66787.1    JXUM01127485    KQ567197    KXJ69565.1    GAKP01015822    JAC43130.1    GDHF01015900    JAI36414.1    CH940647    EDW69224.1    GBXI01015788    JAC98503.1    GAMC01005029    JAC01527.1    CH933809    EDW17984.1    JXJN01005547    GFDF01008477    JAV05607.1    GGLE01000442    MBY04568.1    CP012525    ALC43902.1    CCAG010019769    CH916366    EDV96134.1    GFJQ02007872    JAV99097.1    PZQS01000011    PVD22145.1    GFDL01012689    JAV22356.1    CH902618    EDV40489.1    OUUW01000012    SPP87329.1    DS232179    EDS36830.1    SPP87328.1    CH954178    EDV51957.1    CH379069    EAL29520.1    CH964154    EDW79938.2    KQ419192    KOF84325.1    GFWV01002510    MAA27240.1    KB202014    ESO92825.1    CM004480    OCT66908.1    AF391290    AAM18877.1    JRES01000810    KNC28209.1    JARO02005798    KPP66202.1    JW865104    AFO97621.1    GCES01007077    JAR79246.1    GAAZ01001941    JAA96002.1    LJIJ01000136    ODN01864.1    QRBI01000209    RMB93541.1   

Proteomes

UP000005204    UP000007151    UP000027135    UP000053825    UP000235965    UP000076502    + More
UP000036403    UP000000311    UP000015103    UP000242457    UP000007755    UP000005203    UP000078540    UP000005205    UP000008237    UP000078541    UP000078492    UP000078542    UP000075809    UP000007266    UP000192223    UP000053097    UP000279307    UP000009046    UP000030742    UP000007819    UP000215335    UP000002358    UP000092462    UP000008820    UP000054359    UP000069940    UP000249989    UP000008792    UP000009192    UP000092443    UP000092460    UP000085678    UP000091820    UP000092553    UP000092444    UP000078200    UP000092445    UP000001070    UP000245119    UP000007801    UP000268350    UP000095300    UP000002320    UP000008711    UP000001819    UP000007798    UP000192221    UP000053454    UP000095301    UP000030746    UP000186698    UP000037069    UP000034805    UP000192224    UP000265000    UP000094527    UP000269221    UP000076420   

PRIDE

H9JRN1   

Pfam

PF08799   PRP4        + More
PF00400   WD40
PF12894   ANAPC4_WD40

Interpro

IPR001680   WD40_repeat        + More
IPR014906   PRP4-like       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR036285   PRP4-like_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF158230   SSF158230       

Gene 3D

1.10.720.150     2.130.10.10    

ProteinModelPortal

H9JRN1   S4P9T3   A0A212EYU4   A0A067R098   A0A0L7RBM7   A0A2J7QQV7   + More
A0A154PLZ8   A0A069DUW1   A0A023F961   A0A0J7L4G9   E2AXK2   A0A224XNB9   R4G4V5   A0A0A9YDH1   A0A2A3ENS2   F4W7W5   A0A088A7Q7   A0A195BR78   A0A158NDV2   E2C5H4   A0A195ER82   A0A0K8TD21   A0A195D7U1   A0A195C712   E9IB39   A0A151X4G7   D6WBF5   A0A1W4WVT3   A0A0C9PRS5   A0A310SFG1   A0A1B6D3A3   A0A0T6B1D3   A0A0P4VTL6   A0A026WCC1   E0W1Z2   J3JTE5   J9JV38   A0A2S2R7U7   A0A2H1VWW2   A0A2H8TDM6   A0A131XR90   A0A232EW98   A0A2P6KMS6   K7INN7   A0A224Z4R2   A0A131Z4M5   V5IIJ2   A0A1E1XG00   T1J785   A0A1B0D3J2   G3MF20   A0A023GKZ9   A0A1Y1ND50   A0A2L2YG44   Q16U64   A0A087TNU8   A0A182HCE2   A0A034VMW8   A0A0K8VBS3   B4LFC6   A0A0A1WHH1   W8C589   B4KZX2   A0A1A9XJH9   A0A1B0AY53   A0A1S3K7Z1   A0A1A9WTI4   A0A1L8DGT5   A0A2R5L501   A0A0M4EH75   A0A1B0G260   A0A1A9UJ83   A0A1B0A6K4   B4J363   A0A1Z5KVU0   A0A2T7NLV5   A0A1Q3F461   B3M4J5   A0A3B0KL76   A0A1I8NU86   B0WY20   A0A3B0KTT9   B3NHU2   Q2LZI7   B4N6E9   A0A1W4W3E4   A0A0L8H6D3   A0A293LKA3   A0A1I8MVC5   V4ACK7   A0A1L8F5Q2   Q8T767   A0A0L0C9T3   A0A0P7WRL1   V9KI05   A0A147AL31   T1E5A6   A0A1D2N9E3   A0A3M0IW76   A0A2C9JQQ6  

PDB

6QX9     E-value=2.75863e-150,     Score=1365

KEGG

101736177    K12662 U4/U6 small nuclear ribonucleoprotein PRP4 | (RefSeq) U4/U6 small nuclear ribonucleoprotein P

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0017070   GO:0000398   GO:0046540   GO:0030621   GO:0016905   GO:0060041   GO:0043009   GO:0005515   GO:0003676   GO:0015986   GO:0006508   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

532

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00105

outside

1  -  532

 

 

Pi

262.206061

Theta

177.323011

Tajima's D

1.399623

CLR

0.193182

CSRT

0.765511724413779

Interpretation

Uncertain