SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14858  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012159
Annotation
PREDICTED:_protein_hu-li_tai_shao_[Bombyx_mori]
Location
Bomo_Chr24(+):16519346-16598871      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.119
 

Sequence

CDS
ATGGCTGAGACGGACTCAGAGACGATCCCGAACGGCACCGGGCCCCTGTCCACCGAGGAGGAAGACGAGCGCTTGAAGCAGCGTCCGGCCGACATCGACGCCGATGTCCGCGAAATGGAACGCCGGAAGCGCGTCGAAGCTCTCATGTCCTCGAAGCTGTTCCGCGAAGAATTGGAACGGGTCCTCGACCAGCAGATGCACGAGGGCGGCGACGCTCCGCTCCTGCAGAGGATCAAGGAGATGGTCGGCGGGAGACTGCACACCGGAAGCCTCAGGGGTCCTAGCTGCGTTTTGCCGATCAACGACATCCGAGGTATCGAAGGCATAGGGTATGAGAAGGGGGAGAAGATACTCCGCTGCAAGCTGGCCGCCGTGTACCGGCTGGTGGATTTGTTTGGTTGGACGACAACCGGAGTGACGGGGCAGATAACGGCCCGTCTGAACACGGCCGAGGAGCAGGTGCTGACGTCGCCGCGCGGTCTGCTGCCCCACGAGGTGACCGCCTCGTCTCTGGTTAAGGTGGACATGCAGGGCGTCGTCCAGGACCAGGGCACCACCAACTTTCCGGTCAACGTCGAAGGTTTCTCGGTGCACGCGTCCGTGCACGCGGCCCGTCCGGACCTGCGCTGCGTGGTGCACGTGCGCGCGCCCTCCGCTCTCGCCGTGTCCGCCACGCGGCGCGGCGTCCTGCCCCTATGCCAGGAGGCGGCCCTTCTCGGCGAGGTCGCGTACCACACTCTACCCTACGGCGTGCTGGACAACGCCGAGCGCGACAAGCTGGTCCGCGCGCTGGGCCCGCACGCCAAGGTCGTGGTGCTGAGCGGGGCCGGAGCGCTGTGCTGCGGTGCCACGCTGGAGGAGGCCTTCCTGCACGCGCGTCTGCTCACCGCCGCCACCGACGCGCAACTGAAGTTAGCAGCCACGCCGCTCGATGACCTCATCCTGCTTGACGATGAAACGCAGAGACAGATGTACGAGGCGTCCCGCAAGCCGCCCGCCGACGCGAGCAAGTGGCGCGTGGGCGGCGAAGAGTTCGAGGCTCTGATGCGGATGCTGGACAACGCCGGCTTCCGCACCGGCTACATCTACAGGCATCCCCTCATCAAGAACGACGTGCCGAGACCCAAGAATGACGTGGAAGTTCCACCAGCCGTGTCGTCCCTCGGCTATCTGCTTGAAGAGGAGGAGCTGTACAAACAAGGGTTGTGGAAGAAAGGTCAGGGGAAGACCGGTGAGCGAACCCGCTGGCTGAACTCTCCGAACGTCTACCAGAAGGTCGAGGTTCTGGAGACTGGCACCAGCGACCCCAAGAAGATCACTAAGTGGGTGGACGTTAACAACGAAGAGTGGATCCAAGATGGCTCGGCTCAATCGAGTACGCCCGTTAAAATCGATACATTGCAATTCGTACCGAAAAATACGAACCCAAAGGAATTTAAGAAGCTTCAACAACAGATCAAAGAGAATCGCCGCGCGGACAAGATAAGCGCCGGTCCTCAGTCCCACATCCTCGAGGGGGTGACCTGGGACGAAGCCAGCAAGATGGTCGGCGAGGACGCCGTGAACACCCACACGGGGGACCATGTGGTGCTGATGGGAGCGGCCTCGAAGGGCATCATCCAGCGCGGCTACCAGCACAACGCGGCCGTGTACAGCGCGCCCTACGCCCGGAACCCCTTCGACCATATCACCGACAACGAGATCGACGAGTACCGGCGCGACGTCGAGCGCAAGCGGCGCGGGAACGAATACGACACTGACCTGTCCGAATCGGAGGCGATAAGCGCGGCGCAGATGACGTCACCGGCCAGCGCCCCGTCCGAGACAGAAGAGGAGTCGCGCGACGAACACCGAGTTTTGAGAATAGAGACCAAGCAAGCGCCGGTCCGAAGCCAACCAGAAGTGGTCCTGAGCGATGTTGATACAACTGATTTCTTGAACGCCGAGAGAGCCCATGTCGACAGTACTAGAGGTAATCAAGATACTAACACGCTAATTGAAGCTCTCGCCTCTAATAATAGAAACCTCCACGATTATTCCCGTAGCGCTAATTTCGATAACATAATTAGGGTCTATGAAGATTCAGAGAATCGATCGAAACGCAAACGTAATCTTAGCGAAAACTTCCGAAACGCCCACGACAGTAGTGTGTCCACTTTGCGTTCGGTCACTTCATTAGATTTAGACTCGTTAAAATCTAGGTCGTTACCCAGGAGACTTAATTCGAGCGTCTACCGGAGTCGCTCTCACAGTGGTCTGGTCAACTCTTACATTGAGAATCCAATGCCATTTCATTATCACATTCCTAAGTGTTACTCATGCGGTGCGATTAGCGTCCCGTATTCTTGGAACATGAAATTCAACAATAAGAAACTGTCAAAAGACAATTCCGTATACTATTCGACAGAAAACATAAATCAGAGTGTTGAAAAGAAAATAGACATAGTTAGAGTCAAAGAGAATGTTATCCCGATTTACAGAATAGCAAATTCGGAAACAGAATTCGTTGATAGTCAAGAGTTTAGTGAAGATAATTACATTACTGATGTTGGAGAGGGCTTCGCAGTTCACAATAACGTAGTTACCGCCAAAGATATAGATAAGAATGAGAATAAAATGTCGGCTGATATAAGAGATGTGTCTTTGAGTTCAGAAGGCGAATACCACAGTTTTACAGACGACTTTGAGGAAGCCTATGAAAGTCCAGTTAAAAATTTAGTTAATAAAGACATTCGCGACTACGCGGTACCCATTAACTGCTATTTTCCTGATTTCGCAAAGCAAAGTCCCAGGAAATCTCCCTTAAAAACTCAGAATAACATTCTAGAACCTATACTGGAAGAATCGAAGAGTTCGTATGGTGAGGAATCTAATAAATCAACGGATCGTAGTAAGAGTGATTCAGAAATTGATAAGTTCACAGAGATTAGTATAAATGATGTCTTCGATACCGCATTCATAACTAATAATAATAATAATGTTGGTAATAGTAATAATGAAAATAACCCTACGATTGTTGTGAACGTAAACAATACTGTGACAGCTTCTGGAGTTGACAAAGACAATTCAGAACAGAGTAGTAAAATGCCAACAGAAATCACCAGCTTCAATTCGACATACGAGTTTGAAAAATACGAAATGATAACGGAAATTCTCATTTCACTATTCAATTCTATAGATTTTGATTTGATCACAAAGAACAGAGAAAAGTCCATTAGTAGTTTTGATGATAGCAAGGATGGTGTAAGTTTCTCTATAACCGAAATGGTTGAAGAATACGCAATTCAATTTGATAACACTAATATAACTGATTCGTTTGAAGATCACACCAAAGAATCTCAAATAATTGTAGAAGGCGTAATATATTATATATACAATAATGTCTTTTACGAACTCGAACAGAAAAATGGGAAATCTAGACAAACAAAAACCGTCTTCACTGTCGCGGATAGCGAAGATATAATGTACACAGCGATTAATATATTTAATAGTCAGGATATAGATTGTGAATGTGATAACGACAATTCTATAGTTAATGAAGAGAGGGATCAAGATTATAATGAGGATAATTATTCAAATTCAGATATAGCCAATCATAGCTATACAATAGCAGAGGAATTGGTCTCTGAGTTAGTTGATACATCTACAGGCGAATCTAAAGATTTGAATGTAGCTTTTGTTAATACGAGAGATGATCACGATGCTGTATTGAATAGTTTTGGCGGTACATCTAAAATTCTTTCGATGTCACTGACCGAGAATAGTGGAGGTATAAAATATTGGATATCTTTTGACGATTGCGATACAACAGAGGATATTCAATTCGGTTTCAGACGCAGGAGCACCGAGATGCCCAGTTTTATTGTTATCGATAGTAAGATCGAGAAACGCGTGACGAAAAATCATTCGAGTGACAATGAAGGCGAATCGAATGATATTCCTTTCGATTTGAATGCGATTGGGAATGATATCGATGTGCCGAAGAAGAAATGTATTTATGAACTGCGCAAAAGGGAGTATAGTAGCTGGCCTCCGTTTGAAGATACGTTGTTTTATAAGATCATTTCGAACTTCCGAATGTCGGATAGCTTTGACGCCAGCGAATTAGATAGGGTCAGGATCGACAATAGCTTAGGCTGA
Protein
MAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRIKEMVGGRLHTGSLRGPSCVLPINDIRGIEGIGYEKGEKILRCKLAAVYRLVDLFGWTTTGVTGQITARLNTAEEQVLTSPRGLLPHEVTASSLVKVDMQGVVQDQGTTNFPVNVEGFSVHASVHAARPDLRCVVHVRAPSALAVSATRRGVLPLCQEAALLGEVAYHTLPYGVLDNAERDKLVRALGPHAKVVVLSGAGALCCGATLEEAFLHARLLTAATDAQLKLAATPLDDLILLDDETQRQMYEASRKPPADASKWRVGGEEFEALMRMLDNAGFRTGYIYRHPLIKNDVPRPKNDVEVPPAVSSLGYLLEEEELYKQGLWKKGQGKTGERTRWLNSPNVYQKVEVLETGTSDPKKITKWVDVNNEEWIQDGSAQSSTPVKIDTLQFVPKNTNPKEFKKLQQQIKENRRADKISAGPQSHILEGVTWDEASKMVGEDAVNTHTGDHVVLMGAASKGIIQRGYQHNAAVYSAPYARNPFDHITDNEIDEYRRDVERKRRGNEYDTDLSESEAISAAQMTSPASAPSETEEESRDEHRVLRIETKQAPVRSQPEVVLSDVDTTDFLNAERAHVDSTRGNQDTNTLIEALASNNRNLHDYSRSANFDNIIRVYEDSENRSKRKRNLSENFRNAHDSSVSTLRSVTSLDLDSLKSRSLPRRLNSSVYRSRSHSGLVNSYIENPMPFHYHIPKCYSCGAISVPYSWNMKFNNKKLSKDNSVYYSTENINQSVEKKIDIVRVKENVIPIYRIANSETEFVDSQEFSEDNYITDVGEGFAVHNNVVTAKDIDKNENKMSADIRDVSLSSEGEYHSFTDDFEEAYESPVKNLVNKDIRDYAVPINCYFPDFAKQSPRKSPLKTQNNILEPILEESKSSYGEESNKSTDRSKSDSEIDKFTEISINDVFDTAFITNNNNNVGNSNNENNPTIVVNVNNTVTASGVDKDNSEQSSKMPTEITSFNSTYEFEKYEMITEILISLFNSIDFDLITKNREKSISSFDDSKDGVSFSITEMVEEYAIQFDNTNITDSFEDHTKESQIIVEGVIYYIYNNVFYELEQKNGKSRQTKTVFTVADSEDIMYTAINIFNSQDIDCECDNDNSIVNEERDQDYNEDNYSNSDIANHSYTIAEELVSELVDTSTGESKDLNVAFVNTRDDHDAVLNSFGGTSKILSMSLTENSGGIKYWISFDDCDTTEDIQFGFRRRSTEMPSFIVIDSKIEKRVTKNHSSDNEGESNDIPFDLNAIGNDIDVPKKKCIYELRKREYSSWPPFEDTLFYKIISNFRMSDSFDASELDRVRIDNSLG

Summary

Uniprot
H9JRJ9  
Pubmed
19121390   
EMBL
BABH01031790    BABH01031791    BABH01031792    BABH01031793   
Proteomes
UP000005204   
PRIDE
H9JRJ9   
ProteinModelPortal
H9JRJ9  
PDB
3OCR     E-value=3.40068e-22,     Score=265

Ontologies

KEGG
101740817    K18622 adducin | (RefSeq) protein hu-li tai shao
GO

Topology

Length:
1379
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0902999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00402
outside
1  -  1379
 
 

Population Genetic Test Statistics

Pi
240.31193
Theta
156.660892
Tajima's D
2.301116
CLR
0.194475
CSRT
0.92120393980301
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
31250652 LQVNYLSSKTLINSIVLPEAIYKFFILYSLQVSLHLFVTGFDGSVYDYFYGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIALKPDNHEEETLRVLKNNVHGLENISGERIWGELKKILQGNFAGNLLKTMLNVGVGEYMGKML 95.65 1e-78
28556443 VVVLSGAGALCCGATLEEAFLHAR 100.00 3e-10
28556443 VVVLSGAGALCCGATLEEAFLHAR 100.00 3e-10
28556443 VVVLSGAGALCCGATLEEAFLHAR 100.00 3e-10
28556443 LNTAEEQVLTSPR 100.00 3e-10
28556443 LNTAEEQVLTSPR 100.00 3e-10
31250652 GMDKMLVELSR 100.00 1e-09
31250652 MLVELSR 100.00 3e-09
26822097 WIQDGSAQSSTPVK 95.65 8e-09
28467696 MVFAGIKK 95.65 8e-09
28556443 ILEGVTWDEASK 100.00 3e-07
28556443 GYQHNAAVYSAPYAR 100.00 3e-07
28556443 QRPADIDADVR 100.00 2e-06
28556443 VGGEEFEALMR 100.00 8e-06
28556443 VGGEEFEALMR 100.00 8e-06
26822097 IDTIQFVPK 100.00 1e-04
26280517 NNVVIYRPK 100.00 1e-04
28467696 NPFDEPGKPGTPEVVDWDKDHVDIK 100.00 1e-04
26822097 NPFDHITDNEIDEYRR 100.00 1e-04
26280517 GYHIWNADIRPDDNPIEANIGFTCR 100.00 1e-04
27102218 GPSCVIPINDIR 100.00 1e-04
28467696 GYQGEDIEIQIPAK 100.00 1e-04
28556443 GPSCVLPINDIR 100.00 1e-04
28556443 GPSCVLPINDIR 100.00 1e-04
26822097 IFREEIER 100.00 0.009
28467696 WIPSGPIAIIPIDSQR 100.00 0.009
28556443 VLDQQMHEGGDAPLLQR 100.00 0.009
28556443 VLDQQMHEGGDAPLLQR 100.00 0.009
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