Silkworm Genome Informatics Database

Gene

KWMTBOMO14855

Pre Gene Modal

BGIBMGA012158

Annotation

PREDICTED:_AT-rich_interactive_domain-containing_protein_5B-like_[Bombyx_mori]

Location

Bomo_Chr24(+):16493316-16502980 View in EpiBrowser

Transcription factor

ARID

Location in the cell

Nuclear Reliability : 3.599

CDS

ATGAAACGGGCCCGAACGACGAAGCACACGAATATTGAGGAAGCTTTGCTGAAGTGGTTCAAATATCAGAGGTCTAATAATGTGCCAATAAACGGACCGATTCTACAAGAAAAAGCTAACCATTTTGCTAAATGTTTTGGCGAAGATTTTGTTTGCTCGTCTAGTTGGATCCAACGTTTTCGGGCTCGGCACGGTATTGTCGGCGGGAAAATGAGTCGTGAAGCTGCTAGTGTTGATAAGGATACTGTAGAAGAATGGAAAACGCAAAAGCGGCCTACATTATTTGAAGGCTACGGACCAGATGAAGTTTTTAACGCAGCCGAGACTGGACTTTTTTACAATATGACACCAGACAAGACGTTAAAGTTCAAAGGAGAGAATTGTTCGGGAGGAAAAATGTCTAAGACAAGATTAACGATCATGGTCGCAGCAAATATGACAGGATCATGTAAAAGGAAGCTTTTAGTTATTGGCGAATCTAAGAAACCAAAATGCTTTAAAAACACACACTCACTACCGGTAACGTATGAAAACAATGTGCAGTCATGGATGACATCGGACATTTTTGAGAGATGGTTAAGAAACTGGGACGCTGAATTGAAAGGAAACAAACAGAAAGTTCTACTTTTGGTTGATAACTGTCCTGCTCATCCGGCTGTTACTAATCTAAAATGCATTAAACTTGTGTTCTTACCGCCAAATGTTACATCTGTATTGCAACCAATGGAGCAAGGTGTAATAAGGTGTTTAAAATCTCACTATAGAAGACTGCAAGTGTTAAAGTTAATACAAAACCTTTACAGTGGCGACCAAAAAAGCTTTACGATTCTTGATGCCATCTTGATGATATCAGAAGCATGGAAAAATGTTTCACAAAACACTATAGCTAACTGCTTTAAACATGCTGGTTTTAAAGACCTCTTAACAACAGCCTCAGATGATGTGACTGATGATGATGGAGAGGACAATATTTCTCTTGCTCAATTATCCCAAAATTTACGACCTGCTTTATCTACTACTGAAGCAGCAGAGTTTATTGATGTAGATAACTCTATTGCAATTTGCGCACGAGCTACGGAAGATGATATTGTACGAGATGTTCAAGAGGAGGATGACGAACAGGAAGATTCTGAAGAAAAATTTACTGTACCAACTTTGAATGATGGTATCAATGCGGACACGTTCGAATACCCGGAGCTCGAGGGTCACGAGTTCGTCTGCAACCACCTCGCTCCGCGGCTGAAAGGCAGGCCGAGGGGACGGCGACGGCGCGCAGCCAGGTCCAGGTCGCACTCGCCCTCGCCCTCCTCCCGGTCCAGCGACTCGGACCAGCAGAGCGGCAACCCTGAGCCCGATACGCCGCGGCGCCTCTCTCTGCGGAACGGCGCCGATCGGAACAGCGACGACGAGAACGAGTACCGGCGGCAGGAGACGCCCGAGGACCGGGCCTTCGTCAACCAGCTCAGGCAGTTCTACAGGGACAGGAACGAGACCTTCAAGGAGCACGCCCTCAAAGATGTGACGCCTTTGGCCCTGTACCGCGGGGTGTGCTCGCGGGGCGGCTACCGGGCCGTGTGCCGCCGCGAGCTGTGGCCGCGCCTCCTGCCGCGCCCGGCGCTCGCCCGACGGTACTATGAGAGGTACCTCCTCCCCTTCGAGACCTACGAGCGGAAACTGAACGGCAGCACCGAAAACATCCCGACCATCGAGGTAGCCGACTCCCCACAGCACTCGCCCAGCAAGAAGCCGCTGGACAGGACGAGGGTCATCGATGTGGACGACGAAACGGGCGAGGTCAAGGACGTGCCCGACTGCCCCGCCACCAGCCAGCCCGCCGAGGTGCTCAACCGGGAGTTCCTGGACTCGCTGGACGCGGACAGGCGCGCCGCCAAGATCAACGTCGTGCCCGTCGAGAAGCTGAAGGACGAGAAATGCGCCGTCATCAACAACAACGTGCACCTGCCGAACACATCATCGAACGCTGAACAGACGATAGTGAGGACGAACCCTGTGACCACCGAGCCGGTTGTCAACGGGCATGCGGACAATGGACCGCAGAAGACGGTCCGTCCCCTCGGTAAGAGTTCCCTCCGCGCCGTCCGAGTGAAGGCGACGCGACCTCACGCGCAGCCCGCCAGTGCACCTCCGTCGCTCCTGAGGGGATCCCCGCCCGCCGCCGGACTCAACAACTTCGGCATCCACCGGCCCCCGCCCGCCCCGCGCCGCGCCCCTCGCAGCGACGACGAGATCGTGGAGGTCCCGTACAAGCCCAAGAGTCCCGAGATCATAGACCTGGACGAGTACCCGGAGAGTCCTCAGACCTTCAAGAAGAAGAAGCTGGAGATACTCAAGGAGCGAGGACTGGAGGTGACGGTGCTGCCCGCGGGCCCCTGGCCGGTGCTGGCGCCCGTCGCGGCCGTGCAGCACCTCGGCTACCCGCGGCCCGCGCAGCTGTACCAGGTGTTCGGCGCGGGCCCGCCCAAGGTCATCCAGTCCACCTCGCCCTTCGGCTGCGACGGGCCCCAGAAGACGGTCTACGGGAACCCTAAGGACCCGTTCATGCCGCCGCCGCACGTGCTGCAGGGCGCGCCCGTGAGGCCGCAGCGAGCCCCCCCCGCCCCCCACGAGCCGCCGCACGTGCTCGACCTCACGTGCAAGCTGGGGTCGCCCGCGGGCAGCGCCGTCCGCGTCGACTCTGATCTGGAGATCACGCTGCTTGAGGACACGAACGCCTCGCAGAAGAGGCCGGCGCTCCGCCCCCCGTGCGGCGCGGACGGGGCGGTCGGCTACAGCTACAAGGACCCGTACGCCGCCTTCTACAACAGCCTGGCGGGGTCCGTGGACCAAAGGCAGCTGGCCATGTACCGAGAGCTGGTCTCCACGCAGTTCCGCGGCTACGGGCTGGCGGGCCTCGCGCCCGGACACGTGCCCACCAGCAAGTGA

Protein

MKRARTTKHTNIEEALLKWFKYQRSNNVPINGPILQEKANHFAKCFGEDFVCSSSWIQRFRARHGIVGGKMSREAASVDKDTVEEWKTQKRPTLFEGYGPDEVFNAAETGLFYNMTPDKTLKFKGENCSGGKMSKTRLTIMVAANMTGSCKRKLLVIGESKKPKCFKNTHSLPVTYENNVQSWMTSDIFERWLRNWDAELKGNKQKVLLLVDNCPAHPAVTNLKCIKLVFLPPNVTSVLQPMEQGVIRCLKSHYRRLQVLKLIQNLYSGDQKSFTILDAILMISEAWKNVSQNTIANCFKHAGFKDLLTTASDDVTDDDGEDNISLAQLSQNLRPALSTTEAAEFIDVDNSIAICARATEDDIVRDVQEEDDEQEDSEEKFTVPTLNDGINADTFEYPELEGHEFVCNHLAPRLKGRPRGRRRRAARSRSHSPSPSSRSSDSDQQSGNPEPDTPRRLSLRNGADRNSDDENEYRRQETPEDRAFVNQLRQFYRDRNETFKEHALKDVTPLALYRGVCSRGGYRAVCRRELWPRLLPRPALARRYYERYLLPFETYERKLNGSTENIPTIEVADSPQHSPSKKPLDRTRVIDVDDETGEVKDVPDCPATSQPAEVLNREFLDSLDADRRAAKINVVPVEKLKDEKCAVINNNVHLPNTSSNAEQTIVRTNPVTTEPVVNGHADNGPQKTVRPLGKSSLRAVRVKATRPHAQPASAPPSLLRGSPPAAGLNNFGIHRPPPAPRRAPRSDDEIVEVPYKPKSPEIIDLDEYPESPQTFKKKKLEILKERGLEVTVLPAGPWPVLAPVAAVQHLGYPRPAQLYQVFGAGPPKVIQSTSPFGCDGPQKTVYGNPKDPFMPPPHVLQGAPVRPQRAPPAPHEPPHVLDLTCKLGSPAGSAVRVDSDLEITLLEDTNASQKRPALRPPCGADGAVGYSYKDPYAAFYNSLAGSVDQRQLAMYRELVSTQFRGYGLAGLAPGHVPTSK

Uniprot

H9JRJ8 A0A212EYQ6

Pubmed

19121390 22118469

EMBL

BABH01031799 AGBW02011451 OWR46622.1

Proteomes

UP000005204 UP000007151

PRIDE

H9JRJ8

Pfam

PF01388   ARID        + More
PF03221   HTH_Tnp_Tc5
PF03184   DDE_1

Interpro

IPR006600   HTH_CenpB_DNA-bd_dom        + More
IPR036431   ARID_dom_sf
IPR009057   Homeobox-like_sf
IPR001606   ARID_dom
IPR004875   DDE_SF_endonuclease_dom

SUPFAM

SSF46774 SSF46774 + More
SSF46689 SSF46689

Gene 3D

1.10.150.60

ProteinModelPortal

H9JRJ8 A0A212EYQ6

PDB

1HLV E-value=0.000133614, Score=112

KEGG

101740963 no KO assigned | (RefSeq) AT-rich interactive domain-containing protein 5B-like

GO

GO:0003677 GO:0005634 GO:0006355 GO:0003676 GO:0015986 GO:0006508 GO:0016701 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

980

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01752

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.00059

outside

1 - 980

Pi

243.521997

Theta

195.86455

Tajima's D

1.287024

CLR

0.409414

CSRT

0.739713014349282

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree