Gene

KWMTBOMO14831

Annotation

PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]

Location

Bomo_Chr24(-):15957447-15958786      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.397

CDS

ATGCCTCGGAAGGGTGCTAAAGAAGACGAAGAATGCTTTGCTGAACCTGCTCCACAAATTTCCTTCTGCGAATTAGAAAAATCTATGACTGCATTTTCTGGTGACGATGCATACGGCGTGGATACCTTTATAAAGGATTTTGAAGATATCGCTAATCTCATGCAATGGACGGGCATTGAAAAACTGATCTACGCAAAAAGGCTTTTGAAGGGGACAGCAAAATTGTTCCTGAGATCTTTGACTAGTACGACTACATGGGAACTCTTGAAAACGGGATTAAAAGAGGAATTTGGACTACATCTGAACAGCGCAGCCATTCACAAGACCATATCAAATAGGAAGATGAAACCAGGTGAAACCTACCAACAATATTTTTTGCAACTCAAAGAACTAGCAGTACTCGGAAATATTGAAGATGACGCCCTAATGGAATACATCATTGATGGCATCCCTGACAATGAAATGAATAAAACTATACTATATGGGGCTTCCAACATTAAAGAATTTAGGAAAAAACTTGATTTATATGCTGAAATAAAGAAGAAATGTCGAACGTCAAACAAAGCTTATAATCAATCAACAACATCCAAGCCTACAACATCTGGATGGAAGAAACCATTACCTAAGAAGAGATGTTTCAACTGCGGAGACCTAGATCATGAATCTTCAGGCTGCTCTAAAGGAATAAAGTGCTTCCGTTGTAATGACTTTGGTCATAAGTCAACTGACTGTCCCAAAAATATAAAGAAGACTCTAGAAATAAAATGTAACAAGGAGAATGATAGCCAAGCACCCTACAAAGAAGTTTTGATCAATAATGTTATGGTAAAATCACTTATTGACACTGGCAGTGATGTGAACCTAATGAATGAATCTACATTTACTCAAATACATGGCGACACTTGTAACTACCATCCTGATTTAGTACAAAGCCTGACAGGCATTGGTGACTGTGAGGTACATACAAGAGGCTCATGTACTCCAAGAATTGAGATTGATGGTTGCCAATGTGAAGCAACGTTCTATATAATCGAAGATGACAAAATACCAGTTGATGTAATAATAGGGAACCCAATATTACAGGACATAGAACTCAGTTTTAAGTCTGGTGTTATTTCTGCTAAAAGAATTTTACAACTCACAATGTTAGAGGATCAGGCTGAGGAACCAATGATTATAGGAAATTTCAAATATAAAGATCAGATTGAGAAAATACTGACAGAATATGACCCTGGAAAATGTTGTAAATAA

Protein

MPRKGAKEDEECFAEPAPQISFCELEKSMTAFSGDDAYGVDTFIKDFEDIANLMQWTGIEKLIYAKRLLKGTAKLFLRSLTSTTTWELLKTGLKEEFGLHLNSAAIHKTISNRKMKPGETYQQYFLQLKELAVLGNIEDDALMEYIIDGIPDNEMNKTILYGASNIKEFRKKLDLYAEIKKKCRTSNKAYNQSTTSKPTTSGWKKPLPKKRCFNCGDLDHESSGCSKGIKCFRCNDFGHKSTDCPKNIKKTLEIKCNKENDSQAPYKEVLINNVMVKSLIDTGSDVNLMNESTFTQIHGDTCNYHPDLVQSLTGIGDCEVHTRGSCTPRIEIDGCQCEATFYIIEDDKIPVDVIIGNPILQDIELSFKSGVISAKRILQLTMLEDQAEEPMIIGNFKYKDQIEKILTEYDPGKCCK

Uniprot

A0A0J7K9X8   A0A023F013   A0A0J7KQL1   A0A023EZG2   A0A023EYH9   J9JZ77   + More
A0A023EYF0   W8BB66   A0A0K8URI1   A0A0A1XB16   A0A023EY26   X1X261   J9JNX9   A0A0A1X9Z0   A0A3L8DTV3   W8APB2   W8C8Q1   A0A0A1XFE9   A0A212FCW5   J9JQ65   A0A151IWN5   A0A0K8U2D9   J9HJJ8   A0A1B0CKJ5   A0A1L8DIN4   A0A139WKB5   A0A0K8V149   A0A1B0CR74   A0A2M3Z2X0   A0A151IKW6   W8B0V9   A0A034VAM6   A0A2M3Z3Z7   A0A1W7R6L8   A0A224XHR1   A0A0C9Q2I4   A0A0J7K0N3   A0A0E4G8D8   A0A069DWV3   A0A1S4HEU1   A0A2M4BF33   A0A2M4BF27   E9IMZ6   A0A2M4AEU2   W8C3C0   A0A151J262   A0A182W804   A0A2M4BFM2   A0A2M4BFF1   A0A2M4BDJ8   A0A151II89   A0A2M4BF88   A0A2A4JDT3   A0A2M4BDL5   Q24262   A0A232EEC1   A0A139WB30   A0A0A9YCQ1   A0A0J7K890   A0A2M4BN67  

Pubmed

25474469    24495485    25830018    30249741    22118469    17510324    + More
18362917    19820115    25348373    26334808    12364791    21282665    8055714    28648823    25401762   

EMBL

LBMM01010976    KMQ87102.1    GBBI01004613    JAC14099.1    LBMM01004258    KMQ92652.1    + More
GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    ABLF02014660    ABLF02042774    GBBI01004549    JAC14163.1    GAMC01016174    JAB90381.1    GDHF01023027    JAI29287.1    GBXI01005773    JAD08519.1    GBBI01004477    JAC14235.1    ABLF02005127    ABLF02005129    ABLF02007401    ABLF02011059    GBXI01006173    JAD08119.1    QOIP01000004    RLU23736.1    GAMC01020207    JAB86348.1    GAMC01007326    JAB99229.1    GBXI01004632    JAD09660.1    AGBW02009151    OWR51557.1    ABLF02005846    KQ980852    KYN12192.1    GDHF01031400    JAI20914.1    CH478509    EJY58114.1    AJWK01016333    GFDF01007768    JAV06316.1    KQ971327    KYB28419.1    GDHF01019733    JAI32581.1    AJWK01024440    GGFM01002109    MBW22860.1    KQ977161    KYN05238.1    GAMC01015907    JAB90648.1    GAKP01019383    JAC39569.1    GGFM01002486    MBW23237.1    GEHC01000930    JAV46715.1    GFTR01008753    JAW07673.1    GBYB01008203    JAG77970.1    LBMM01018094    KMQ83877.1    HACL01000135    CFW94429.1    GBGD01000341    JAC88548.1    AAAB01008984    GGFJ01002513    MBW51654.1    GGFJ01002514    MBW51655.1    GL764261    EFZ18057.1    GGFK01005990    MBW39311.1    GAMC01002792    JAC03764.1    KQ980436    KYN16061.1    GGFJ01002620    MBW51761.1    GGFJ01002621    MBW51762.1    GGFJ01001974    MBW51115.1    KQ977505    KYN02276.1    GGFJ01002579    MBW51720.1    NWSH01001951    PCG69590.1    GGFJ01001952    MBW51093.1    Z27119    CAA81643.1    NNAY01005459    OXU16662.1    KQ971376    KYB25116.1    GBHO01014721    JAG28883.1    LBMM01011782    KMQ86633.1    GGFJ01005354    MBW54495.1   

Proteomes

UP000036403    UP000007819    UP000279307    UP000007151    UP000078492    UP000008820    + More
UP000092461    UP000007266    UP000078542    UP000075920    UP000218220    UP000215335   

PRIDE

Q24262   

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF00098   zf-CCHC
PF02037   SAP
PF17917   RT_RNaseH
PF03732   Retrotrans_gag
PF00067   p450
PF00077   RVP
PF14392   zf-CCHC_4
PF09668   Asp_protease
PF12017   Tnp_P_element

Interpro

IPR001878   Znf_CCHC        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR000477   RT_dom       
IPR003034   SAP_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR021109   Peptidase_aspartic_dom_sf       
IPR041373   RT_RNaseH       
IPR005162   Retrotrans_gag_dom       
IPR002401   Cyt_P450_E_grp-I       
IPR001128   Cyt_P450       
IPR017972   Cyt_P450_CS       
IPR036396   Cyt_P450_sf       
IPR018061   Retropepsins       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR034145   RP_RTVL-H-like       
IPR021896   Transposase_37       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF68906   SSF68906       
SSF50630   SSF50630       
SSF48264   SSF48264       

Gene 3D

1.10.720.30     2.40.70.10     3.30.420.10     1.10.630.10    

CDD

cd06095  RP_RTVL_H_like

ProteinModelPortal

A0A0J7K9X8   A0A023F013   A0A0J7KQL1   A0A023EZG2   A0A023EYH9   J9JZ77   + More
A0A023EYF0   W8BB66   A0A0K8URI1   A0A0A1XB16   A0A023EY26   X1X261   J9JNX9   A0A0A1X9Z0   A0A3L8DTV3   W8APB2   W8C8Q1   A0A0A1XFE9   A0A212FCW5   J9JQ65   A0A151IWN5   A0A0K8U2D9   J9HJJ8   A0A1B0CKJ5   A0A1L8DIN4   A0A139WKB5   A0A0K8V149   A0A1B0CR74   A0A2M3Z2X0   A0A151IKW6   W8B0V9   A0A034VAM6   A0A2M3Z3Z7   A0A1W7R6L8   A0A224XHR1   A0A0C9Q2I4   A0A0J7K0N3   A0A0E4G8D8   A0A069DWV3   A0A1S4HEU1   A0A2M4BF33   A0A2M4BF27   E9IMZ6   A0A2M4AEU2   W8C3C0   A0A151J262   A0A182W804   A0A2M4BFM2   A0A2M4BFF1   A0A2M4BDJ8   A0A151II89   A0A2M4BF88   A0A2A4JDT3   A0A2M4BDL5   Q24262   A0A232EEC1   A0A139WB30   A0A0A9YCQ1   A0A0J7K890   A0A2M4BN67  

PDB

2LLI     E-value=0.0038442,     Score=95

KEGG

NA   

GO

GO:0004190   GO:0008270   GO:0003676   GO:0015074   GO:0020037   GO:0016021   GO:0005506   GO:0016705   GO:0006313   GO:0004803   GO:0016874   GO:0006508   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00159

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.01321

outside

1  -  416

 

 

Pi

32.435705

Theta

21.656573

Tajima's D

3.614564

CLR

41.722675

CSRT

0.995400229988501

Interpretation

Possibly Balancing Selection