Gene

KWMTBOMO14827

Pre Gene Modal

BGIBMGA012146

Annotation

cuticular_protein_RR-1_motif_48_precursor_[Bombyx_mori]

Location

Bomo_Chr24(+):15900947-15903787      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.505

CDS

ATGCAGGCGTGGAGGCCTGGGCCCTCTGATCACAACACCGTCGCATCCGTACCTGCACCAATTTTACCAAAGCCAGAACCCTGGAAAGCGCCTTATCCATCGAAGGAGAAACAGGCAGCAATATTGCACCACAAGCAAGCACTTACTTCAGAGGGCAGTTTCCGGTTCGAATACGCTTCAGACAACGGCTTGGCGGCCGGAGAGGTCATAGAACCGGACGGCTCCAGAGTCGGGGCCTATCAGTACAAGGACCCCAATGGACAAGTGGTGAAACTGAAGTACAGAGCCGGCAAGGAAGGCTTCCAAATCCTGGAGGGCAGTCATCTCCCGAAGAGTCCAGAGCCAGTAGCTCCTCACACTCCGGGTAATTGA

Protein

MQAWRPGPSDHNTVASVPAPILPKPEPWKAPYPSKEKQAAILHHKQALTSEGSFRFEYASDNGLAAGEVIEPDGSRVGAYQYKDPNGQVVKLKYRAGKEGFQILEGSHLPKSPEPVAPHTPGN

Uniprot

C0H6P0   A0A2A4K0W7   A0A2W1BJY2   A0A2H1V198   A0A3S2PAP0   A0A212FL97   + More
A0A194Q792   A0A2S1ZS75   A0A194PGU5   I4DIR0   A0A194RV42   A0A1D2N6E9   A0A212EWJ0   A0A1B6E342   A0A171ALZ4   A0A023F7A9   A0A0L7LEW1   R4FL29   A0A2H1WXH0   A0A2A4K6P9   A0A067RGC7   A0A2R7X4A3   A0A0A9VZA2   E9IU17   A0A232F457   K7JD28  

Pubmed

19121390    19280704    28756777    22118469    26354079    29712872    + More
22651552    27289101    25474469    26227816    24845553    25401762    26823975    21282665    28648823    20075255   

EMBL

BABH01031848    BABH01031849    BABH01031850    BR000549    FAA00551.1    NWSH01000309    + More
PCG77558.1    KZ150076    PZC73954.1    ODYU01000218    SOQ34618.1    RSAL01000140    RVE46077.1    AGBW02007808    OWR54525.1    KQ459580    KPI99265.1    MF942795    AWK28318.1    KQ459604    KPI92522.1    AK401178    BAM17800.1    KQ459765    KPJ20036.1    LJIJ01000185    ODN00824.1    AGBW02012000    OWR45814.1    GEDC01004946    JAS32352.1    GEMB01000895    JAS02245.1    GBBI01001582    JAC17130.1    JTDY01001503    KOB73711.1    ACPB03008328    GAHY01002264    JAA75246.1    ODYU01011747    SOQ57666.1    NWSH01000090    PCG79696.1    KK852700    KDR18153.1    KK856968    PTY26628.1    GBHO01044096    GBHO01036074    GBRD01016294    GBRD01016293    GDHC01017732    JAF99507.1    JAG07530.1    JAG49532.1    JAQ00897.1    GL765841    EFZ15903.1    NNAY01001070    OXU25250.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053268    UP000053240    + More
UP000094527    UP000037510    UP000015103    UP000027135    UP000215335    UP000002358   

PRIDE

C0H6P0   

Pfam

PF00379   Chitin_bind_4        + More
PF06087   Tyr-DNA_phospho

Interpro

IPR000618   Insect_cuticle        + More
IPR010347   Tdp1       
IPR027415   TDP_C       
IPR031311   CHIT_BIND_RR_consensus       

Gene 3D

3.30.870.20    

ProteinModelPortal

C0H6P0   A0A2A4K0W7   A0A2W1BJY2   A0A2H1V198   A0A3S2PAP0   A0A212FL97   + More
A0A194Q792   A0A2S1ZS75   A0A194PGU5   I4DIR0   A0A194RV42   A0A1D2N6E9   A0A212EWJ0   A0A1B6E342   A0A171ALZ4   A0A023F7A9   A0A0L7LEW1   R4FL29   A0A2H1WXH0   A0A2A4K6P9   A0A067RGC7   A0A2R7X4A3   A0A0A9VZA2   E9IU17   A0A232F457   K7JD28  

KEGG

100379423    no KO assigned | (RefSeq) CPR48, BmorCPR48; cuticular protein RR-1 motif 48

GO

GO:0042302   GO:0006281   GO:0008081   GO:0005634   GO:0008270   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR12415  

Length:

123

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14292

outside

1  -  123

 

 

Pi

162.940899

Theta

123.975147

Tajima's D

0.917509

CLR

0

CSRT

0.63796810159492

Interpretation

Uncertain