SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14820  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012200
Annotation
Mitochondrial_ribosomal_protein_L43_[Operophtera_brumata]
Location in the cell
Mitochondrial   Reliability : 2.425
 

Sequence

CDS
ATGTCGGCTAACAACCTATTTTTAAAATCGGCGTTCGTCCGTGCGCCCTTGAAAAATGGCGTAGGACGATACGTGTGTCAATTGCAGAGAATAGTCTTCAAGTTTTGCAAATCCAACGGAGCCAGCCGTGGTATGAGAGACTTCATAGAGCAAGATTTGGTTGATTTCTCAAAAGACAACCCTGGAGTGGTGGTGTATTTAAAGCCACGTAGACATCGTGGGCCGGTCATAGTTGGGGAATATTTGAACGGGGACAGATTGTGGATGAGCGTCCACAACAAAACCCACGAGGAGATCGTAAAATGGGTCGAATTGTTCCGAACTCAACAAGGCAACAACTGGAACTCGAGACTCCGCAAGTACCAGTACACGAACCACCCCTCGGTCCAAGGACCCTGGACTCCGTTCACGTTCAAGGACCCAGAATTGAACACGGCCGAACTACCCGACGTGAGATTCGGTAGTAACAATCGACTACCCGCAACGGCAACTGAACAGTTGAGACTGATGTTCGAGAAACAAAAGTTGGATGAATTAAAAACGGCGGAGTGA
Protein
MSANNLFLKSAFVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELPDVRFGSNNRLPATATEQLRLMFEKQKLDELKTAE

Summary

EMBL
BABH01031863    NWSH01000049    PCG80206.1    KZ150076    PZC73963.1    ODYU01000588    + More
ODYU01007291    SOQ35634.1    SOQ49943.1    GDQN01001211    JAT89843.1    RSAL01000084    RVE48371.1    JTDY01002157    KOB71986.1    AGBW02008825    OWR52483.1    KQ460396    KPJ15343.1    AK403991    BAM20081.1    CH933808    EDW08526.1    CM000071    EAL25654.1    CH479183    EDW36060.1    KQ971311    EEZ99007.1    CH940648    EDW60035.1    CH902619    EDV36675.1    CH916367    EDW01640.1    KK107119    QOIP01000009    EZA58534.1    RLU18687.1    CH480824    EDW56993.1    CM000158    EDW92373.1    CM000362    CM002911    EDX08413.1    KMY96089.1    LJIG01022464    KRT80435.1    CH964282    EDW85602.1    CH954179    EDV56849.1    CP012524    ALC41718.1    OUUW01000001    SPP72978.1    AE013599    AY113453    AAF47047.1    AAM29458.1    UFQS01001373    UFQT01001373    SSX10561.1    SSX30245.1    GBXI01002168    JAD12124.1    KQ976532    KYM81591.1    ADTU01026650    GL762556    EFZ21169.1    GAKP01003920    JAC55032.1    GANO01003287    JAB56584.1    CCAG010005864    GEZM01011226    JAV93583.1    GDHF01012134    JAI40180.1    QCYY01001313    ROT78945.1    KQ981512    KYN40814.1    GL451708    EFN78745.1    UFQT01002915    SSX34275.1    KQ977739    KYN00226.1    JXJN01023310    AJVK01006197    KQ981085    KYN09596.1    KQ982806    KYQ50458.1    GFDL01010365    JAV24680.1    GL888284    EGI63325.1    KK853419    KDR07719.1    DS231831    EDS31287.1    CH477259    EAT45753.1    JXUM01090094    GAPW01004867    KQ563817    JAC08731.1    KXJ73240.1    AAZX01006711    KZ288235    PBC31405.1    JR044092    AEY59840.1    GFDG01002444    JAV16355.1    GFDF01004951    JAV09133.1    KQ414726    KOC62642.1    GFDF01004958    JAV09126.1    GFDG01003164    JAV15635.1    KQ777390    OAD52087.1    NNAY01000061    OXU31408.1    KQ434980    KZC13083.1    KQ435706    KOX80218.1    AXCN02001161    AXCM01002248    GBGD01003193    JAC85696.1    APGK01020465    BT127676    KB740202    KB632050    KI209184    AEE62638.1    ENN81043.1    ERL88295.1    ERL95991.1    GGFK01009973    MBW43294.1    AAAB01001638    EAA01975.2    APCN01002591    GECZ01016764    JAS53005.1    GAMD01003009    JAA98581.1    ADMH02002202    ETN57845.1    GGFJ01009678    MBW58819.1    GDKW01001514    JAI55081.1    ACPB03011663    GAHY01001842    JAA75668.1    AAAB01008880    EAA08534.2    ATLV01010760    KE524612    KFB35677.1    GECL01000619    JAP05505.1    GGFJ01009677    MBW58818.1    GDIQ01102964    GDIP01076769    LRGB01000868    JAL48762.1    JAM26946.1    KZS15658.1   
Pfam
PF05047   L51_S25_CI-B8        + More
PF03227   GILT
Interpro
IPR007741   Ribosome/NADH_DH        + More
IPR039927   MRPL43/MRPL51       
IPR036249   Thioredoxin-like_sf       
IPR004911   Interferon-induced_GILT       
SUPFAM
SSF52833   SSF52833       
PDB
6NU3     E-value=4.10227e-25,     Score=280

Ontologies

Topology

Length:
183
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00074
Exp number, first 60 AAs:
0.00074
Total prob of N-in:
0.05511
outside
1  -  183
 
 

Population Genetic Test Statistics

Pi
236.518476
Theta
182.43492
Tajima's D
0.14715
CLR
0.427006
CSRT
0.405829708514574
Interpretation
Uncertain
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