Gene

KWMTBOMO14816

Pre Gene Modal

BGIBMGA012202

Annotation

PREDICTED:_LIM_domain-binding_protein_2_[Bombyx_mori]

Location

Bomo_Chr24(-):15660647-15681309      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.42

CDS

ATGCCAGTGCTGCTCGAAGTCTGCGTACACCCCGAAAGCGCTAGATGGCGCGGTGACAAAGTGGCCTACATGCCGGTGGCGTTGGGCTCGCTCGGCGGCGAGGGCGAGTACCGCGACTACGGCCATCATCTATCGCCGCATCATACGCCGCATCCGCCGCACATACAGTACCATGAGTACGCGCCGCCGCCGCCGCCGCCGATCTACCACCCGATACCGGACCCCTACTTCAGGCGGCACACGCCATACTTCGGGCAACCAGATTACAGAGTATATGAACTCAATAAGAGGTTACAGCAGAGGACGGAGGACTCTGACAACCTCTGGTGGGACGCGTTCGCGACGGAATTCTTCGAGGATGACGCGACGCTAACACTAACATTCTGTTTAGAAGACGGACCCAAAAGATACACGATAGGGAGGACCCTGATACCTCGCTACTTCCGCAGTATATACGAAGGCGGCGTCTCAGAGTTGTACTACACGATGCGCCAGCCCAAAGAGTCCTTCCACAACACGAGCATCACGCTGGACTGCGATCATTGCACAATGGTCACGCACCACGGCAAGCCTATGTTCACGAAGGTGTGCACGGAAGGCAGACTGATCCTCGAGTTCACGTTCGACGACCTCATGCGGATCAAGTCGTGGCACATGGCGGTTCGCGCGCACCGCGAGCTGATCCCGCGGCAGGCGGTCCACCCGCCGGACCACGCCGCGCTCGACCAGCTCACGAAGAACATCACACGGCAGGGCATCACGAATTCAACGCTTAACTACTTAAGGTTATGCGTGATATTGGAGCCGATGCAAGAGCTCATGTCGCGGCACAAAGCGTACGCGCTGTCGCCGCGGGACTGTCTAAAGACAACGCTCTTCCAGAAATGGCAGCGGATGGTCGCACCTCCTGAGTCCCAGCGGCCGGCGAGTAAGCGACGTAAGCGCAAAGGCAGTGCGGGCGCTAATGCGGCGCCGCCCGCGCCCGCCAAGAAACGATCACCCGGACCTAACTTCAGCCTCGCCTCCCAGGACGTGATGGTAGTAGGCGAACCGTCGCTGATGGGCGGCGAGTTCGGCGACGAGGACGAGCGGCTGATCACGCGGCTGGAGAACACGCAGTACGAGGGCGAGGGCGTGGAGTGGAGCGCCCCGCCCCCCGCGTCCCCCGCCAAGACCCCCCCCGGCACCCACTGA

Protein

MPVLLEVCVHPESARWRGDKVAYMPVALGSLGGEGEYRDYGHHLSPHHTPHPPHIQYHEYAPPPPPPIYHPIPDPYFRRHTPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHHGKPMFTKVCTEGRLILEFTFDDLMRIKSWHMAVRAHRELIPRQAVHPPDHAALDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPESQRPASKRRKRKGSAGANAAPPAPAKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYEGEGVEWSAPPPASPAKTPPGTH

Uniprot

U6C886   A0A194Q2Q2   H9JRP2   A0A212EWG3   A0A2A4K8F4   U6C771   + More
S4PMP0   A0A2A4K818   A0A0N1PHD8   A0A1B6DPS9   A0A3Q0IRJ0   A0A1B6E8X5   A0A0V0GCW0   A0A146LE46   V5G3G0   A0A1Y1LQU4   A0A1Y1LNI5   A0A1B6F6X4   A0A0A9WWL7   D6WBT5   A0A023F3G4   A0A1B6CIC4   A0A146L0J9   A0A1B6DFI6   A0A1W4XKX9   A0A1Y1LSE5   E0VPP1   T1IZ74   A0A224XQP1   A0A146LV70   A0A088ALZ2   A0A069DUT5   A0A0A9X6Z6   A0A154PK00   A0A2D3E2V8   A0A2R7WFT9   A0A310SES3   B7Q6T8   A0A2J7QQY3   A0A1J1IZU8   A0A0P4W827   K7JAU8   A0A2M4AAX5   A0A2M4CNX0   A0A182GN90   A0A2M4ABK6   A0A2M4AC57   A0A1B0D887   A0A1J1J010   A0A2M4AB23   A0A2M4BHK3   A0A182JSI6   A0A2M4BHP5   A0A182RJV7   A0A2M3Z261   A0A2M4CPR3   A0A1Y1LNJ8   A0A2M4CNH1   A0A2M4BH86   A0A1Q3FUE9   V5HAI1   Q16K77   Q16R65   A0A0C9Q9J5   A0A0P5G457   A0A067QIH5   A0A1L8DHC6   A0A084W172   A0A2M4AJM5   A0A182PMS5   A0A2M4BHJ7   A0A0C9RTY2   A0A1J1J2J0   A0A1D2MJD4   A0A0P4ZPX5   A0A0N8AIP9   A0A0C9R417   A0A2M4CNM3   A0A2M3ZGI4   Q7PMR9   A0A087U0U1   A0A2R5LK47   A0A293N4P5   A0A1Z5LGR6   A0A0P5BNK7   A0A0P5BIW9   E9FX36   A0A1B0CUW2   A0A0P5CII5   A0A087T8P6   U4UUQ9   A0A182WAX3   A0A182J471   A0A0P5DW26   V5IHZ1   A0A131Y3I2   A0A1E1XBB8   A0A0P6BQG8   A0A0P6HQS8  

Pubmed

26354079    19121390    22118469    23622113    26823975    28004739    + More
25401762    18362917    19820115    25474469    20566863    26334808    20075255    26483478    25765539    17510324    24845553    24438588    27289101    12364791    28528879    21292972    23537049    28503490   

EMBL

AB687554    BAO05323.1    KQ459580    KPI99279.1    BABH01031875    BABH01031876    + More
BABH01031877    AGBW02011995    OWR45823.1    NWSH01000049    PCG80208.1    AB687555    BAO05324.1    GAIX01003455    JAA89105.1    PCG80209.1    KQ460396    KPJ15348.1    GEDC01009612    JAS27686.1    GEDC01002917    JAS34381.1    GECL01000387    JAP05737.1    GDHC01012188    JAQ06441.1    GALX01003906    JAB64560.1    GEZM01051083    JAV75198.1    GEZM01051078    JAV75202.1    GECZ01023819    JAS45950.1    GBHO01030742    JAG12862.1    KQ971314    EEZ97869.2    GBBI01002896    JAC15816.1    GEDC01024099    JAS13199.1    GDHC01017130    JAQ01499.1    GEDC01012916    JAS24382.1    GEZM01051080    JAV75200.1    AAZO01004210    DS235366    EEB15347.1    AFFK01020413    GFTR01006137    JAW10289.1    GDHC01008369    JAQ10260.1    GBGD01001189    JAC87700.1    GBHO01030744    JAG12860.1    KQ434938    KZC12172.1    MF140471    ATU31736.1    KK854718    PTY18131.1    KQ760561    OAD59784.1    ABJB010509821    ABJB010794332    DS870229    EEC14560.1    NEVH01012082    PNF30995.1    CVRI01000065    CRL05663.1    GDRN01065843    JAI64633.1    AAZX01002733    AAZX01007004    AAZX01008610    GGFK01004598    MBW37919.1    GGFL01002703    MBW66881.1    JXUM01075938    KQ562914    KXJ74855.1    GGFK01004677    MBW37998.1    GGFK01005054    MBW38375.1    AJVK01012568    AJVK01012569    AJVK01012570    AJVK01012571    CRL05664.1    GGFK01004664    MBW37985.1    GGFJ01003394    MBW52535.1    GGFJ01003372    MBW52513.1    GGFM01001842    MBW22593.1    GGFL01002700    MBW66878.1    GEZM01051081    JAV75199.1    GGFL01002686    MBW66864.1    GGFJ01003279    MBW52420.1    GFDL01003963    JAV31082.1    GANP01004098    JAB80370.1    CH477974    EAT34689.1    CH477723    EAT36891.1    GBYB01011048    JAG80815.1    GDIQ01246721    JAK05004.1    KK853313    KDR08625.1    GFDF01008225    JAV05859.1    ATLV01019238    KE525266    KFB43966.1    GGFK01007626    MBW40947.1    GGFJ01003353    MBW52494.1    GBYB01011046    JAG80813.1    CRL05662.1    LJIJ01001104    ODM92975.1    GDIP01214029    JAJ09373.1    GDIP01143545    JAJ79857.1    GBYB01011044    JAG80811.1    GGFL01002681    MBW66859.1    GGFM01006850    MBW27601.1    AAAB01008968    EAA13295.5    KK117621    KFM70980.1    GGLE01005776    MBY09902.1    GFWV01022999    MAA47726.1    GFJQ02000470    JAW06500.1    GDIP01187030    JAJ36372.1    GDIP01189224    JAJ34178.1    GL732526    EFX88004.1    AJWK01029714    GDIP01170066    JAJ53336.1    KK113976    KFM61485.1    KB632375    ERL93890.1    AXCP01007737    GDIP01151823    JAJ71579.1    GANP01004097    JAB80371.1    GEFM01002764    JAP73032.1    GFAC01002641    JAT96547.1    GDIP01012925    JAM90790.1    GDIQ01015549    JAN79188.1   

Proteomes

UP000053268    UP000005204    UP000007151    UP000218220    UP000053240    UP000079169    + More
UP000007266    UP000192223    UP000009046    UP000005203    UP000076502    UP000001555    UP000235965    UP000183832    UP000002358    UP000069940    UP000249989    UP000092462    UP000075881    UP000075900    UP000008820    UP000027135    UP000030765    UP000075885    UP000094527    UP000007062    UP000054359    UP000000305    UP000092461    UP000030742    UP000075920    UP000075880   

PRIDE

U6C886    H9JRP2    U6C771   

Pfam

PF01803   LIM_bind        + More
PF17916   LID

Interpro

IPR030174   LDB2        + More
IPR041363   LID       
IPR029005   LIM-bd/SEUSS       

ProteinModelPortal

U6C886   A0A194Q2Q2   H9JRP2   A0A212EWG3   A0A2A4K8F4   U6C771   + More
S4PMP0   A0A2A4K818   A0A0N1PHD8   A0A1B6DPS9   A0A3Q0IRJ0   A0A1B6E8X5   A0A0V0GCW0   A0A146LE46   V5G3G0   A0A1Y1LQU4   A0A1Y1LNI5   A0A1B6F6X4   A0A0A9WWL7   D6WBT5   A0A023F3G4   A0A1B6CIC4   A0A146L0J9   A0A1B6DFI6   A0A1W4XKX9   A0A1Y1LSE5   E0VPP1   T1IZ74   A0A224XQP1   A0A146LV70   A0A088ALZ2   A0A069DUT5   A0A0A9X6Z6   A0A154PK00   A0A2D3E2V8   A0A2R7WFT9   A0A310SES3   B7Q6T8   A0A2J7QQY3   A0A1J1IZU8   A0A0P4W827   K7JAU8   A0A2M4AAX5   A0A2M4CNX0   A0A182GN90   A0A2M4ABK6   A0A2M4AC57   A0A1B0D887   A0A1J1J010   A0A2M4AB23   A0A2M4BHK3   A0A182JSI6   A0A2M4BHP5   A0A182RJV7   A0A2M3Z261   A0A2M4CPR3   A0A1Y1LNJ8   A0A2M4CNH1   A0A2M4BH86   A0A1Q3FUE9   V5HAI1   Q16K77   Q16R65   A0A0C9Q9J5   A0A0P5G457   A0A067QIH5   A0A1L8DHC6   A0A084W172   A0A2M4AJM5   A0A182PMS5   A0A2M4BHJ7   A0A0C9RTY2   A0A1J1J2J0   A0A1D2MJD4   A0A0P4ZPX5   A0A0N8AIP9   A0A0C9R417   A0A2M4CNM3   A0A2M3ZGI4   Q7PMR9   A0A087U0U1   A0A2R5LK47   A0A293N4P5   A0A1Z5LGR6   A0A0P5BNK7   A0A0P5BIW9   E9FX36   A0A1B0CUW2   A0A0P5CII5   A0A087T8P6   U4UUQ9   A0A182WAX3   A0A182J471   A0A0P5DW26   V5IHZ1   A0A131Y3I2   A0A1E1XBB8   A0A0P6BQG8   A0A0P6HQS8  

PDB

1RUT     E-value=2.27794e-11,     Score=166

KEGG

101742826    K15617 LIM domain-binding protein 1 | (RefSeq) Ldb; LIM domain-binding protein 2

GO

GO:0000122   GO:0005667   GO:0045944   GO:0030274   GO:0005634   GO:0045892   GO:0007275   GO:0001102  

PANTHER

PTHR10378:SF8   PTHR10378  

Length:

397

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000460000000000001

Exp number, first 60 AAs:

0.00031

Total prob of N-in:

0.00178

outside

1  -  397

 

 

Pi

203.579302

Theta

201.604404

Tajima's D

0.417285

CLR

1.370448

CSRT

0.485575721213939

Interpretation

Uncertain