SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14800
Annotation
gag-pol_protein_[Lasius_niger]
Location in the cell
Cytoplasmic   Reliability : 1.506
 

Sequence

CDS
ATGTTCAGGAATATTATTCAACAGGAACAGGATCGTGGTTTCCAGAGGATATTTTGGCGTTTTAATCAATTTGAACCGGTTCAGGAGTATGAGTTGAATACCGTTACCTATGGAGTGGCGTCTTCTCCGTTCCTGGCGTGCAGAACAATTAAGCAACTCGTCCACGATGAAGGTTCTTGTTTTCCATGTGCTGTTTTTCCTCTTACTTCTTCCATTTACGTTGACGATGTGGCCCATGGAGCCTCAAGTTTGGGTGAAGCCGAGTTGATTAAATCTGACGTCATTCATTTATTGAAGAAGGGAGGTTTTGAATTACGGAAATGGGCAAGTAACAAGAAAGAGTTACTTGCAGACATACCTCCTGAACATTGCGTAACCGATTTTGTATCATTAGATATAGAAATTACCCCTTCTCACAAAATATTGGGTTTGAAGTGGGAACCTCTTCCGGACATCTTTTCTTTCCAAGTTAATGTTCTTCACAGAGAATGTACCAAGCGTACCATTCTAAGTGAGGTGGCTCGTATTTATGACCCTTTGGGCTTTCTCTGTCCTTTGACGTTCATTCCCAAGTTATTGGTTCAGCGTTTGTGGGTCTTGAGTGTTGGGTGGGATGATGTCCCTCCTGACGACATAGTGCGTCATTGGAACCTGTACGTAGCCGAGCTTCCACTTATTGAACGTATTCGTATTCCTAGATGTATATCGACCACTGGAAGCATGGAATCGTACCAATTACATGGTTTTGCTGACAGTTCGGAGGCTGGCTATGGAGCTGTGGATGAAATTCGTAAGCTCGAGAATGGTGTACCATTACCTAAACCGTGGAGAAAACTCAATCCATTCCTGGACGACCAAGGAGTTGTCAGGGTGGGCGGCCGTTTGTCTCGTTCTGGTCTTGAGTTTAGTCATAAGCATCCTGCTCTGTTGCCGCGTCATTCTAGGTTCACATACATGATCATCGAAGCAATTCACAAAGAGAATTGTCATCCTGGGTTGGGAACGACACAATATCTTTTGATGCAGCTGTTTTGGAGAGCAAAGTGGAACAAAAGAGGCGAAACTTTGAATGATGGTTCTGTTGTACTGATTAAGAGTGAAAGTACAATGCCGTTGCACTGGCCTTTAGCTCGTGTCTCCAAGCTTCACGCCAGCCCTGATGGCGTGGTTCGTATTGCCACTGTCCGTACAGCCAATGGCAAATTCTACACTAGGCCATTAACGAAGTTAGCTCCCCTACCTATTTATTCTGATTAA
Protein
MFRNIIQQEQDRGFQRIFWRFNQFEPVQEYELNTVTYGVASSPFLACRTIKQLVHDEGSCFPCAVFPLTSSIYVDDVAHGASSLGEAELIKSDVIHLLKKGGFELRKWASNKKELLADIPPEHCVTDFVSLDIEITPSHKILGLKWEPLPDIFSFQVNVLHRECTKRTILSEVARIYDPLGFLCPLTFIPKLLVQRLWVLSVGWDDVPPDDIVRHWNLYVAELPLIERIRIPRCISTTGSMESYQLHGFADSSEAGYGAVDEIRKLENGVPLPKPWRKLNPFLDDQGVVRVGGRLSRSGLEFSHKHPALLPRHSRFTYMIIEAIHKENCHPGLGTTQYLLMQLFWRAKWNKRGETLNDGSVVLIKSESTMPLHWPLARVSKLHASPDGVVRIATVRTANGKFYTRPLTKLAPLPIYSD

Summary

Pfam
PF05585   DUF1758        + More
PF05380   Peptidase_A17
PF03564   DUF1759
PF18701   DUF5641
Interpro
IPR008042   Retrotrans_Pao        + More
IPR005312   DUF1759       
IPR008737   Peptidase_asp_put       
IPR040676   DUF5641       

Ontologies

GO

Topology

Length:
418
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03551
Exp number, first 60 AAs:
0.00142
Total prob of N-in:
0.01467
outside
1  -  418
 
 

Population Genetic Test Statistics

Pi
248.494768
Theta
132.562939
Tajima's D
1.105715
CLR
133.767271
CSRT
0.689665516724164
Interpretation
Uncertain
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