Gene

KWMTBOMO14791  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012220

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_1-like_[Amyelois_transitella]

Location

Bomo_Chr24(-):15202547-15207195      View in EpiBrowser

Full name

Tetratricopeptide repeat protein 1      

Location in the cell

Nuclear   Reliability : 3.413

CDS

ATGAATTTGTTTTGTGCGAATACATGGCTTCAAAATACGTGCAAAACTTCCAATGAGGCTGTAATTAATGACATCACAAGGGATTTGGAAACATCGCTCAATACTAACGAAAATACTGAAGGATATGTCATTCAGCCTGGTACTAGTGAGGAACAATGCTTTTCTACAGAAACAGCGAAAAATCATACAGAACTACCCAAAGATGCAGAATTCGACGCTGACCATAACGCATCAGACAACGAAGATGACAAAGAAAGCGATACAGATTCTATAGATGAAGAACATCTAAAAGATGACGAGGTAGCACTAACGGATGACCAGAAAGCAGAAAGGCTGATCATGGCCGAGGAATTGAAACAGGCCGGAAACAATTCTTACAAATGTGGAGAGTATGAGAGAAGTGTAGAGAAATACACCGAAGGTTTGAGATTATGTCCTCTTCAATTCGACAAAGTACGTGCGATTCTATATTGCAACAGGAGTGCGGCTAGGATGAAATTGAAAAAGTATCAAAAGTCAATCAAGGACTGCACTAAAGCACTGGAACTCGATGACAAATATGTCAAAGCGTACTTAAGGCGTGCCTCGTCCAACGAGCTATTGGAAAAGTATCAAGACGCCTTGAGCGATTATGAGAAGGCTCTAGAATTGGACCCGTCTTTGGAGGAGACCAGGAAAGCCGTGGTCCGCCTGAAGCCGATCGTGGAAGCCAAGAATGAGGAAATGAAGAAAGAGATGCTGGGGAAACTGAAGGATCTGGGGAACATGATACTGAAGCCGTTCGGTCTGTCCACGGAGAACTTTAATATGGAACAGGACCCGGAGACGAAAGGATACAAAATTAATTTTAAGCAATAA

Protein

MNLFCANTWLQNTCKTSNEAVINDITRDLETSLNTNENTEGYVIQPGTSEEQCFSTETAKNHTELPKDAEFDADHNASDNEDDKESDTDSIDEEHLKDDEVALTDDQKAERLIMAEELKQAGNNSYKCGEYERSVEKYTEGLRLCPLQFDKVRAILYCNRSAARMKLKKYQKSIKDCTKALELDDKYVKAYLRRASSNELLEKYQDALSDYEKALELDPSLEETRKAVVRLKPIVEAKNEEMKKEMLGKLKDLGNMILKPFGLSTENFNMEQDPETKGYKINFKQ

Subunit

Interacts with the GAP domain of NF1. Interacts (via TPR repeats) with HSP90AA1 and HSPA8.

Keywords

Complete proteome   Phosphoprotein   Reference proteome   Repeat   TPR repeat  

Feature

chain  Tetratricopeptide repeat protein 1

Uniprot

H9JRR0   A0A2A4JWR3   A0A212EZE9   A0A194Q769   A0A182NFU3   A0A0K8TI18   + More
A0A0A9X6M6   A0A151X902   A0A182QP00   A0A151J3K4   E9J750   A0A026WE21   U5EYP7   A0A182HJK0   A0A182XKE4   Q7Q9B6   A0A151IAH6   A0A182J2Z7   A0A182KWQ5   A0A195B5R0   A0A158P136   A0A2M4ARH5   F4W999   A0A0C9RRQ3   A0A2J7RFQ7   A0A182TKP5   B0XDM8   A0A154PN89   A0A1W4W4R3   A0A182UZQ2   A0A182XXA8   E2B4B8   A0A1Q3F4A1   A0A310SKA6   A0A067RS22   A0A0L7RHV7   D6X2V6   E2AM74   A0A3L8DQ18   A0A232EVR0   A0A1S3JTY5   U4UPL4   N6U2U0   A0A0M8ZSB9   A0A1B6CG96   E0VUW9   A0A1I8M6X4   T1PBC3   A0A3S2NR27   A0A1Q3F440   A0A1Y1MSK3   B4NL99   A0A2A3EI17   A0A1B6MM46   Q16V27   A0A0L0BN82   A0A1B6JMC0   A0A2G8L654   A0A1J1IRN5   A0A0P4VMF2   R4FM29   A0A088ACQ9   A0A2Y9DC46   L8IG12   A0A1Z5L7K9   A0A2Y9ELB8   A0A341BUJ2   U3K2M9   Q3ZBR5   A0A2U3UZ02   A0A2Y9MX63   A0A1B6EQ97   A0A0V0G5W1   A0A287AVJ6   R4WPA2   W5PUM2  

Pubmed

19121390    22118469    26354079    25401762    21282665    24508170    + More
12364791    14747013    17210077    20966253    21347285    21719571    25244985    20798317    24845553    18362917    19820115    30249741    28648823    23537049    20566863    25315136    28004739    17994087    17510324    26108605    29023486    27129103    22751099    28528879    30723633    23691247    20809919   

EMBL

BABH01040834    NWSH01000437    PCG76441.1    AGBW02011291    OWR46879.1    KQ459580    + More
KPI99240.1    GBRD01000583    JAG65238.1    GBHO01027217    JAG16387.1    KQ982402    KYQ56842.1    AXCN02000248    KQ980275    KYN17026.1    GL768421    EFZ11392.1    KK107293    EZA53279.1    GANO01001888    JAB57983.1    APCN01002178    AAAB01008904    EAA09638.5    KQ978223    KYM96268.1    KQ976598    KYM79597.1    ADTU01001043    GGFK01010048    MBW43369.1    GL888002    EGI69281.1    GBYB01011230    JAG80997.1    NEVH01004410    PNF39669.1    DS232769    EDS45536.1    KQ434960    KZC12690.1    GL445549    EFN89466.1    GFDL01012692    JAV22353.1    KQ760478    OAD60236.1    KK852458    KDR23545.1    KQ414590    KOC70399.1    KQ971372    EFA10651.2    GL440715    EFN65480.1    QOIP01000005    RLU22497.1    NNAY01001968    OXU22425.1    KB632309    ERL92096.1    APGK01044467    APGK01044468    KB741026    ENN74931.1    KQ435876    KOX70135.1    GEDC01024836    JAS12462.1    DS235797    EEB17175.1    KA646061    AFP60690.1    RSAL01000132    RVE46371.1    GFDL01012721    JAV22324.1    GEZM01025399    JAV87475.1    CH964272    EDW84302.1    KZ288234    PBC31433.1    GEBQ01002967    JAT37010.1    CH477605    EAT38403.1    JRES01001621    KNC21477.1    GECU01007381    JAT00326.1    MRZV01000202    PIK55741.1    CVRI01000057    CRL02386.1    GDKW01000273    JAI56322.1    ACPB03018838    GAHY01001153    JAA76357.1    JH881299    ELR55138.1    GFJQ02003563    JAW03407.1    AGTO01020935    BC103153    GECZ01029654    JAS40115.1    GECL01002686    JAP03438.1    AEMK02000102    DQIR01257876    HDC13354.1    AK417491    BAN20706.1    AMGL01093842   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000075884    UP000075809    + More
UP000075886    UP000078492    UP000053097    UP000075840    UP000076407    UP000007062    UP000078542    UP000075880    UP000075882    UP000078540    UP000005205    UP000007755    UP000235965    UP000075902    UP000002320    UP000076502    UP000192223    UP000075903    UP000076408    UP000008237    UP000027135    UP000053825    UP000007266    UP000000311    UP000279307    UP000215335    UP000085678    UP000030742    UP000019118    UP000053105    UP000009046    UP000095301    UP000283053    UP000007798    UP000242457    UP000008820    UP000037069    UP000230750    UP000183832    UP000015103    UP000005203    UP000248480    UP000248484    UP000252040    UP000016665    UP000009136    UP000245320    UP000248483    UP000008227    UP000002356   

PRIDE

H9JRR0    Q3ZBR5   

Pfam

PF13181   TPR_8        + More
PF00515   TPR_1
PF07719   TPR_2
PF01509   TruB_N

Interpro

IPR013026   TPR-contain_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR001440   TPR_1       
IPR019734   TPR_repeat       
IPR013105   TPR_2       
IPR039048   Trub2       
IPR002501   PsdUridine_synth_N       
IPR020103   PsdUridine_synth_cat_dom_sf       

SUPFAM

SSF48452   SSF48452        + More
SSF55120   SSF55120       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9JRR0   A0A2A4JWR3   A0A212EZE9   A0A194Q769   A0A182NFU3   A0A0K8TI18   + More
A0A0A9X6M6   A0A151X902   A0A182QP00   A0A151J3K4   E9J750   A0A026WE21   U5EYP7   A0A182HJK0   A0A182XKE4   Q7Q9B6   A0A151IAH6   A0A182J2Z7   A0A182KWQ5   A0A195B5R0   A0A158P136   A0A2M4ARH5   F4W999   A0A0C9RRQ3   A0A2J7RFQ7   A0A182TKP5   B0XDM8   A0A154PN89   A0A1W4W4R3   A0A182UZQ2   A0A182XXA8   E2B4B8   A0A1Q3F4A1   A0A310SKA6   A0A067RS22   A0A0L7RHV7   D6X2V6   E2AM74   A0A3L8DQ18   A0A232EVR0   A0A1S3JTY5   U4UPL4   N6U2U0   A0A0M8ZSB9   A0A1B6CG96   E0VUW9   A0A1I8M6X4   T1PBC3   A0A3S2NR27   A0A1Q3F440   A0A1Y1MSK3   B4NL99   A0A2A3EI17   A0A1B6MM46   Q16V27   A0A0L0BN82   A0A1B6JMC0   A0A2G8L654   A0A1J1IRN5   A0A0P4VMF2   R4FM29   A0A088ACQ9   A0A2Y9DC46   L8IG12   A0A1Z5L7K9   A0A2Y9ELB8   A0A341BUJ2   U3K2M9   Q3ZBR5   A0A2U3UZ02   A0A2Y9MX63   A0A1B6EQ97   A0A0V0G5W1   A0A287AVJ6   R4WPA2   W5PUM2  

PDB

4JA9     E-value=4.444e-16,     Score=205

KEGG

101745822    no KO assigned | (RefSeq) tetratricopeptide repeat protein 1-like

GO

GO:0003723   GO:0009982   GO:0001522   GO:0006396   GO:0005829   GO:0005515   GO:0006508   GO:0008270   GO:0016701   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR13195  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03111

outside

1  -  285

 

 

Pi

296.599004

Theta

160.019729

Tajima's D

3.103547

CLR

0.172289

CSRT

0.983300834958252

Interpretation

Uncertain