SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14784
Annotation
PREDICTED:_uncharacterized_protein_LOC105842541_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.048
 

Sequence

CDS
ATGGCAGAACCGTGGCCCCTACGACCTCAAAAGCTTTTGGGCTTGACCGACTTGCAACGTTTTGAGTTGGAAGGACGTTATGAGCGTATTCAGTGTTTATACAACGACTTCGACAAGTTACAGACGGAGATCGAGACGTTGTTGGACGCACCCGATGACGACTTTAAATCCCGGTGTGAGTTCGAGGACCAATACCATCCTACGGTGGCACTGGCGCGAAGCCTGCTTTCAGCAACTACCAACTCAGAAGGTTCAGCTATGGTGAGAGTGCGTGGTGCCGATGGCACTAAGCACCCCGCCCGAGTTTTGCTGGACAACGGTAGTACCGCCAACTTTGTCACAGACGCCTTTTCATCCAAGCTTGGGCTGTCACGACACGGTACTAGCTCCACTACAATCACAGATGTGTCCGCTTTTAAAGTTCCATTAATTCATTATCTTGGGACTTATCTCGGTTTATCCGTATCCGTGGCTACCTTGTAA
Protein
MAEPWPLRPQKLLGLTDLQRFELEGRYERIQCLYNDFDKLQTEIETLLDAPDDDFKSRCEFEDQYHPTVALARSLLSATTNSEGSAMVRVRGADGTKHPARVLLDNGSTANFVTDAFSSKLGLSRHGTSSTTITDVSAFKVPLIHYLGTYLGLSVSVATL

Summary

Pfam
PF05585   DUF1758        + More
PF05380   Peptidase_A17
PF18701   DUF5641
PF03564   DUF1759
PF17921   Integrase_H2C2
Interpro
IPR008737   Peptidase_asp_put        + More
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
IPR040676   DUF5641       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
SUPFAM
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.56707
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05912
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
334.478
Theta
191.027902
Tajima's D
2.5453
CLR
0.10288
CSRT
0.950352482375881
Interpretation
Possibly Positive selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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