SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14781  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003842
Annotation
PREDICTED:_extradiol_ring-cleavage_dioxygenase-like_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.45
 

Sequence

CDS
ATGGCCACGGTTGCTCCTGCTCTATTCGTCAACCATGGAGGTGGACCTCTGCCGCTGTTGGGGGACAAGGAACACGCTGGACTAACTGTATTCCTGAGAGACGAAGTTAAAAAGCATGTGAACCTAAAAGAATTGAAAGCGATAATACTGGTCACAGCGCACTGGGAGGAAGACGTCGTTACCATTTCATCCGGTAAACACCACGATTTATACTTTGACTACTACGGCTTCCCCCCTGAATCATACAAATACAGATACGACGCGCCAGGGAATCCTGAATTGGCCAATAGAATACACGAAAAACTTAAAAACTCCGGTATAGACTCTAAATTAGATCCAAAACGAGGTTGGGACCACGGAGTTTTCGTTCCGATGCTTCTGATTAATCCCGCGGCAGACATTCCCATAGTACAAATATCCGTATTGAACAGTCAAGATCCAAAGAAGCATTATGAATTAGGCGAAGCACTTCAGGAGTTCCGCAAAGAGGGTATCGCTATCCTAGGCTCCGGTATGTCCTACCATAACATGAGAGAGTTCAGGTTCGGACGAAACCAAGACCACGTTGTAAACACGGAATTCGATGAGTACTTAACCAAAGTGTGTACGGCTAAAGATGAGAAATCAAGACGAGAAGGTTTGTATTCTTGGAGAGACCAGCCCGGGGCCACAGAGGCACATCCAGTGCGAGCCGCTGAGCATTTTATGCCATTGATCGTTGTGGCTGGTGCGGGTGGGACAGCCCAAGGCGAAAGAATCTTCAATTGGGATATGGCTAATACGTTTAGATTGAGTGCCTTCATATGGAAAGGCTTGTAA
Protein
MATVAPALFVNHGGGPLPLLGDKEHAGLTVFLRDEVKKHVNLKELKAIILVTAHWEEDVVTISSGKHHDLYFDYYGFPPESYKYRYDAPGNPELANRIHEKLKNSGIDSKLDPKRGWDHGVFVPMLLINPAADIPIVQISVLNSQDPKKHYELGEALQEFRKEGIAILGSGMSYHNMREFRFGRNQDHVVNTEFDEYLTKVCTAKDEKSRREGLYSWRDQPGATEAHPVRAAEHFMPLIVVAGAGGTAQGERIFNWDMANTFRLSAFIWKGL

Summary

EMBL
BABH01037001    JTDY01002010    KOB72334.1    KQ459580    KPI99237.1    KZ150292    + More
PZC71577.1    KQ460389    KPJ15421.1    NWSH01000454    PCG76313.1    AGBW02013708    OWR42938.1    BABH01040849    ODYU01004553    SOQ44557.1    ODYU01000786    SOQ36102.1    PCG76302.1    KZ679008    PSS22988.1    KQ257451    KND04148.1    AZHE01000010    KHN97552.1    KZ613484    PMD20532.1    AZNE01000074    KID95495.1    AZNH01000130    KID81645.1    KN832872    KIN04705.1    AZHC01000026    OAA38306.1    EQ962657    EED15670.1    KI963931    EUC49488.1    NPIC01000005    RDL35692.1    KV441557    OAG01279.1    QGDH01000053    RAR11839.1    CP017814    APA06171.1    CH476622    EDN96435.1    GG738863    EFC45345.1    MNUE01000055    OJD30810.1    LSBJ02000008    OWT42635.1    MIKG01000004    RAO66631.1    KI968713    EUN29422.1    KI964538    EUC39107.1    KE747825    RMZ70832.1    JPOX01000040    KFX42832.1    DS995902    EEA22445.1    NPFK01000058    PCH04148.1    KB916581    EOD45480.1    AFQF01003434    EGU75648.1    AHHD01000453    EKG12259.1    KV441483    OAG18482.1    KZ107845    OSS48550.1    PVEM01000002    PTD11004.1    JH650971    EXA45818.1    JH658371    EXK92264.1    JH658854    EXL76127.1    KB445640    EMD66137.1    KZ804208    PVH75080.1    KB726312    EMT70784.1    MABQ02000005    PCD35719.1    KB730431    ENH66136.1    MRCU01000004    RKK19975.1    MRCX01000086    MRCZ01000049    MRCY01000061    FMJY01000001    RKK73266.1    RKK96137.1    RKL04906.1    SCO77276.1    AYSA01000036    ESZ98714.1    LN649229    CEI66388.1    KB733466    ENI01850.1    KB445571    EMD94858.1    AZGY01000020    KZZ90834.1    QKXC01000053    RBR24611.1    FCQH01000012    CVL01791.1    JH658289    EXL97164.1    DS231708    KNB10075.1    JH717843    EWY91563.1    JH717901    EWZ38228.1    JH657939    EXM23582.1    JH659332    EXK40298.1    MDYQ01000058    PRP84689.1    CAGA01000032    CCE31592.1    HF679027    CCT69256.1    FJOF01000011    CZR47023.1    JRVG01000103    FMJU01000002    KLO87042.1    SCN79966.1    KQ947412    KUJ18948.1    PKMI01000072    RBA10008.1    MTQA01000169    PNP75390.1    NQOC01000001    PCD39502.1    HG970332    CEF74786.1    QJUS01000568    RBQ84305.1    QKXB01000330    RBR06916.1    AFNW01000054    EKJ77825.1    JYNV01000281    KZM20367.1    KV441707    OAL04852.1    PXOG01000074    RGP78182.1    FP929136    CBX99499.1    CP000681    ABP75450.1    JELW01000051    EXU96328.1    AZNF01000007    KID65027.1    QNSC01000014    RBP77442.1    KZ804242    PVH73407.1    BBXB01000075    GAX97938.1    LYXU01000001    OBS28538.1    MDYQ01000034    PRP86222.1    JH767558    EON62397.1    QUTG01004988    QUTH01002797    RHY86638.1    RHZ23830.1    QUSZ01006630    QUTE01022446    RHY05096.1    RHY82150.1    QUTA01005257    QUTD01005288    RHY16558.1    RHY62902.1    QUTC01004819    RHY62193.1    QUTB01008040    RHY43705.1    QUTF01026943    RHY81078.1    KV441662    OAL44313.1    KZ679126    PTB81644.1   
Proteomes
UP000005204    UP000037510    UP000053268    UP000053240    UP000218220    UP000007151    + More
UP000241818    UP000053201    UP000030816    UP000235672    UP000031176    UP000031192    UP000054321    UP000243498    UP000001745    UP000054032    UP000254866    UP000077069    UP000249619    UP000177798    UP000001312    UP000006671    UP000183809    UP000078397    UP000249363    UP000054337    UP000053841    UP000029285    UP000001294    UP000218381    UP000013521    UP000002489    UP000007129    UP000077248    UP000193240    UP000241587    UP000030751    UP000030663    UP000030676    UP000016934    UP000244409    UP000009097    UP000016929    UP000219602    UP000016928    UP000270866    UP000219369    UP000285084    UP000285237    UP000285860    UP000019487    UP000245910    UP000012338    UP000016936    UP000078544    UP000253153    UP000184255    UP000030685    UP000030753    UP000030766    UP000030701    UP000030703    UP000241769    UP000016801    UP000016800    UP000183971    UP000036287    UP000219504    UP000070700    UP000251714    UP000236664    UP000219517    UP000070720    UP000253456    UP000252067    UP000007978    UP000076837    UP000077206    UP000266234    UP000002668    UP000006699    UP000030151    UP000031186    UP000252468    UP000054177    UP000091967    UP000016924    UP000077535    UP000240760   
Pfam
PF02900   LigB
Interpro
IPR004183   Xdiol_dOase_suB        + More
IPR014436   Extradiol_dOase_DODA       
PDB
2PW6     E-value=3.47621e-26,     Score=292

Ontologies

Topology

Length:
272
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.15835
Exp number, first 60 AAs:
0.00169
Total prob of N-in:
0.01271
outside
1  -  272
 
 

Population Genetic Test Statistics

Pi
276.710851
Theta
162.14453
Tajima's D
2.365384
CLR
157.676647
CSRT
0.932153392330384
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 AAEGIFVTIDEMER 95.45 1e-08
26280517 DQMQTIFGYIGK 100.00 0.028
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