Silkworm Genome Informatics Database

Gene

KWMTBOMO14761 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003815

Annotation

PREDICTED:_dihydrolipoyllysine-residue_succinyltransferase_component_of_2-oxoglutarate_dehydrogenase_complex?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr24(-):14564075-14569666 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.949

CDS

ATGCTACGACGCTGCTCGAAGCACATCCAGACGCTGTACCGGCGTCAGGGCCAGTCCATCCGCTTCAAGTCAACAACTCAAACGCCCAAAATACTTGCACCCTTACACGCAACCAAACTGAACCAACCGAGAGCTCTGGTCGCCCACAATCAAGTAGCATCCATCCACTTCACGAATCCCCTGCTTGTAGAGCAAGATGTGACCACTCCAAGTTTCCCGGACTCCGTTTCTGAAGGTGACGTCAAATTAGATAAGAAAGTGGGAGACAGCGTAGCCGCCGATGAAGTGGTCCTGGAAATCGAGACGGACAAAACCGCCATTCCGGTCATGGCGCCCGGCCATGGTGTCATCAAGGAGTTGTACGTCAAAGACGGAGAAACCGTTAAAGCTGGACAAAAGCTGTTTAGGTTAGAGATCACAGGGGAAGCACCTAAAAAGGCTGCAGCTACTGAGGCTCCGAAGGTTGATACACCACCGCCGCCGCCGCCGCCTCCTCAAGCTGCCGCTCCGCCTCCGCCCCCACCTCCCGCCGCGGCAGCTCCTCCCTCACCACCCCCACCTACCCCTAAAGCCGCTCCGCCTCCGCCCGCTGCTCCCATCTCCTCAATACCAGTCGCCGCCATCCGTCACGCTCAGGCGATCGAGACAGCAACTGTTAAAGTTCCTCCACAGGACTACAGCAAAGAGATCGCCGGCACGCGCACCGAGCAACGGGTCAAGATGAACAGGATGAGGCAACGCATCGCTCAGCGTTTGAAGGACGCTCAGAACACGAACGCCATGTTGACGACATTCAACGAGATCGACATGTCCCACATCATGGCATTCCGTAAGAAGCACCTCGACACCTTCACTAAGAAGCACAGCATCAAACTCGGTCTGATGTCACCTTTCGTGAAGGCGGCCGCCAACGCCCTGATGGACCAGCCCGTGGTGAACGCTGTTATCGAAGAAAACGAGATAATTTATAGGGACTACGTAGATATTTCGGTAGCGGTCGCCACACCGAAAGGTCTCGTCGTGCCGGTCATCAGAAACGTTCAGAACATGACTTATGCTGATATCGAGCTCACCATAGCTGGGCTAGCGGAAAAAGCGAGAACCGGTAAGCTCACGATCGAAGAAATGGACGGCGGAACGTTCACCATCAGCAATGGCGGCGTTTTCGGGTCTCTGATGGGAACGCCAATCATCAATCCGCCTCAATCTGCTATACTGGGTATGCACGGCATCTTCGAGCGGCCCATCGCTCTGAACGGCCAAGTCGTGATCAGGCCCATGATGTATATTGCCCTAACTTACGACCACAGGCTGATAGACGGCCGCGAAGCTGTACTCTTCCTCAGAAAGATCAAGGAAGGCGTCGAAGATCCCGCCACTATCGTCGCTGGCTTGTAA

Protein

MLRRCSKHIQTLYRRQGQSIRFKSTTQTPKILAPLHATKLNQPRALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVSEGDVKLDKKVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKAGQKLFRLEITGEAPKKAAATEAPKVDTPPPPPPPPQAAAPPPPPPPAAAAPPSPPPPTPKAAPPPPAAPISSIPVAAIRHAQAIETATVKVPPQDYSKEIAGTRTEQRVKMNRMRQRIAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIVAGL

Uniprot

A0A182XFF6 A0A182VHB3 A0A182I845 A0A182LZB7 A0A182L7R3 A0A182UJB8 + More
Q7PSM6 A0A182P453 A0A2M4A567 A0A182GB39 A0A1J1HPC6 E2BWH7 F4W4Q6

Pubmed

20966253 12364791 14747013 17210077 26483478 20798317 + More
21719571

EMBL

APCN01002618 AXCM01007126 AAAB01008817 EAA05341.5 EGK96314.1 GGFK01002633 + More
MBW35954.1 JXUM01051990 JXUM01051991 JXUM01051992 JXUM01051993 KQ561714 KXJ77740.1 CVRI01000015 CRK89904.1 GL451131 EFN79933.1 GL887547 EGI70822.1

Proteomes

UP000076407 UP000075903 UP000075840 UP000075883 UP000075882 UP000075902 + More
UP000007062 UP000075885 UP000069940 UP000249989 UP000183832 UP000008237 UP000007755

Pfam

PF00364 Biotin_lipoyl + More
PF00198 2-oxoacid_dh

Interpro

IPR001078   2-oxoacid_DH_actylTfrase        + More
IPR006255   SucB
IPR011053   Single_hybrid_motif
IPR003016   2-oxoA_DH_lipoyl-BS
IPR000089   Biotin_lipoyl
IPR023213   CAT-like_dom_sf

SUPFAM

SSF51230 SSF51230

Gene 3D

3.30.559.10

ProteinModelPortal

A0A182XFF6 A0A182VHB3 A0A182I845 A0A182LZB7 A0A182L7R3 A0A182UJB8 + More
Q7PSM6 A0A182P453 A0A2M4A567 A0A182GB39 A0A1J1HPC6 E2BWH7 F4W4Q6

PDB

1SCZ E-value=1.46271e-74, Score=712

KEGG

101736268 K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
00310    Lysine degradation - Bombyx mori (domestic silkworm)
00380    Tryptophan metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0006099 GO:0004149 GO:0045252 GO:0008152 GO:0016746 GO:0006355 GO:0003824 GO:0016491 GO:0015930

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07227

Exp number, first 60 AAs:

0.00149

Total prob of N-in:

0.01526

outside

1 - 465

Pi

177.978688

Theta

151.360896

Tajima's D

0.73893

CLR

0.285194

CSRT

0.585570721463927

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
31250652	IIYSSYAKLVGAKHYYTSAKLNQGVEELFLDLTREMLERQEHNTQTEVNRTSQVVVVDDEVPVQSTCCSGHRSS	100.00	1e-99
28467696	DAQNAIITASNAFQTWK	95.83	3e-10
28556443	SIMNSFVNDIFER	100.00	2e-09
28467696	AAAMPINPKPFINSITGK	95.83	4e-09
28556443	EGVEDPATIVAGL	100.00	0.003
28556443	GLVVPVIR	100.00	0.003

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics