Gene

KWMTBOMO14757

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr24(-):14489730-14494426      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.036

CDS

ATGGGCGTATCTCCTGCGGCACGCCCCGCCGCGATTGCTGCTGCGAGGGCAACAACGTCCGCCCCTCCGAAGACACCGGCGTCTGCTCCTGCCCCTACCCAGCCTGCAAAGGCGGGGCCTGGCAGGAGCCGGACTAAGAAGAAGAGGGGCGTCAACGCCGCAAAACCGGCCCCGACCCCCCAGCCCCGCCCACTGCCCCCTGCCCCAGCCAATATGGAAGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCTAAGAAAGTAGCGGCGCCTGCTGCGCCGCGTCCCAAGCCCGCGCTTGCGGCAAGCGCTCTCCGCCAAGAGGGTCGAGCGGAGCCGAGGAGCCAAAAAGGAAGAGGAGGAGCACGCAGAAAGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTATTGGAGCTGCTGCCGGCCGCCAAAGAAAAGGGCATCACGTACCACGACGTGATGACCCAGGCGCGCGGTGGCGTAAATGTGGACGCCCTCGGCGTGGAGGGTGGCGTCAAGGTCCGGCAGACGGCGAACGGGGCTCGTCTTTTGGAGTGCCCCGGCCCTAATACAAACGCCGCGGCCGAAAAATTAGCGGCCCGGCTGAGGGAGATTCTGCCAGACCCCGAGGTGGTGCGTATCGCGCGGCCCGTGAAGATGGGAGAAGTCAAAATCACGGGCCTCGACGAGTGCGCCACAAAGGAGGAGGTCGCCGCAGCCATCGCGTCCCAGGGCAACTGCGCCCTCGCCGATGTCAAGGTCGGGGATTTCCGGGTCACCTACTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCCATTACAACGGCGAACCTCCTGGCCACCCCTCCACAGGGTCGGCCTTCGGACAGCCCGGGGAGATTGCGCGTGGGCTGGGTTGTGGCCCACGTGCAACTGCAGGAGAGCAGGCCGTGCCCCTCGACAGTGGACCGCAGCAACCTGTGCTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCGCAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGTTAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACCAAAACGAGGATGGGCGGAAAGAAAAAGAAACCGGCTGCAAAAAGGGCAGCCGGTGAGTCAGCTCCCGCCGCGGCACCAGAGCAGCCGCAGGGCGGGACAGACGAGGGAGCCCCGGCACAGGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCACTGTCGCCGCGGAGCCCTACTTCGTCCCCACCGACCAGGACTGCTGGATCGGGGACGTCGACGGCTCCGTGGCAATCGTACTAAGACAGTCCGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCATCGTGATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCCGAATTCGAGCGGTATTTGGGCGGGCTCGAGGCGCATTTACATCGCTTCGGGTCCCGCCCTGTCATCGTCGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGTGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTCGAGCTCTCCGCCTCCTCCATGCCGTCGTCGTCGCCGTCTTCGGCGTCAGCCGCGGACGCCCGTGGTGAGGAGGAGCTCCCGCAAGGTGCACCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGGATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGGGCCAAAACCCACGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGTGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCACGAGGAGTGCGTGAAGGCGCGCCGCCGGAGCGCACGCCACCGCCGCCGCTGTCGTCGCGACGCTGCGTTCGCGGAGACGGCGGCCCAGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTACAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAGTTTCCGCGCTTTTCCCGCCAGCAGCGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGTGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAAGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTATTGCTGGACGAAGTGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACGATCGACGCGATTCTGCGCGTGCGGGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCTGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCGTACGGGGTCCCCTCCCCGGGCTGAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTGGCTCCGAGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACAAGGATCCGACGGTTGGGACTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGCTTTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTAATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACTGGTCTTCGGTACCTCGGCCTCGAACTGGATGGTCGGTGGACCTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGACGGCCGGCTCTTTGA

Protein

MGVSPAARPAAIAAARATTSAPPKTPASAPAPTQPAKAGPGRSRTKKKRGVNAAKPAPTPQPRPLPPAPANMEEAWTTVVRRGPKKVAAPAAPRPKPALAASALRQEGRAEPRSQKGRGGARRKPRAPRSAAVVLELLPAAKEKGITYHDVMTQARGGVNVDALGVEGGVKVRQTANGARLLECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGDFRVTYSGTRTAWARCPITTANLLATPPQGRPSDSPGRLRVGWVVAHVQLQESRPCPSTVDRSNLCFRCGQPGHKAASCTAAAPHCVLCDAVKRKADHRAGGPACKSAPSSTKTRMGGKKKKPAAKRAAGESAPAAAPEQPQGGTDEGAPAQDLLVHTMAEWSIDVTVAAEPYFVPTDQDCWIGDVDGSVAIVLRQSAALPPLDMVARGPGYVAARIDGTIVIGAYFSPNRSLAEFERYLGGLEAHLHRFGSRPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIVTGLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSMPSSSPSSASAADARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWGPKPTRLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLHEECVKARRRSARHRRRCRRDAAFAETAAQLHADCRQKQTALQLAIGEAKKQSMKTLLGKLQPWALPVTERLQPRQLREIVSALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDVAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEVGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVVRGPLPGLSVICYADDTLVVAPRRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWTFRAHFEKLGPRRPAL

Uniprot

A0A212EYI2   A0A0J7KQK3   A0A3S2LNH8   A0A0J7NC28   A0A0J7N0R3   A0A0J7KFH2   + More
A0A0J7KF91   A0A0J7KRB8   A0A0J7NFZ0   A0A0J7N8R4   A0A0J7KDK4   A0A0J7KCD9   J9LQQ1   J9JWJ3   J9KT61   J9L0J0   J9KJG8   J9LA43   J9KM84   X1WZ64   J9M784   X1X2B5   X1WJY4   A0A139WNC9   A0A139WN93   J9KNS1   A0A139WAH4   J9K6F0  

Pubmed

22118469    18362917    19820115   

EMBL

AGBW02011529    OWR46521.1    LBMM01004272    KMQ92618.1    RSAL01003504    RVE40273.1    + More
LBMM01006996    KMQ90130.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01008445    KMQ88871.1    LBMM01003988    KMQ92922.1    LBMM01005474    KMQ91485.1    LBMM01008226    KMQ89040.1    LBMM01008902    KMQ88543.1    LBMM01009610    KMQ87992.1    ABLF02030663    ABLF02041312    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02009073    ABLF02030702    ABLF02042963    ABLF02027248    ABLF02041886    ABLF02018098    ABLF02018942    ABLF02041885    ABLF02011183    ABLF02041884    ABLF02018758    ABLF02018759    ABLF02019402    ABLF02059310    ABLF02011238    KQ971310    KYB29500.1    KYB29499.1    ABLF02018808    KQ971388    KYB24913.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460   

Proteomes

UP000007151    UP000036403    UP000283053    UP000007819    UP000007266   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF01421   Reprolysin
PF00075   RNase_H

Interpro

IPR001878   Znf_CCHC        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.30.420.10    

ProteinModelPortal

A0A212EYI2   A0A0J7KQK3   A0A3S2LNH8   A0A0J7NC28   A0A0J7N0R3   A0A0J7KFH2   + More
A0A0J7KF91   A0A0J7KRB8   A0A0J7NFZ0   A0A0J7N8R4   A0A0J7KDK4   A0A0J7KCD9   J9LQQ1   J9JWJ3   J9KT61   J9L0J0   J9KJG8   J9LA43   J9KM84   X1WZ64   J9M784   X1X2B5   X1WJY4   A0A139WNC9   A0A139WN93   J9KNS1   A0A139WAH4   J9K6F0  

PDB

1WDU     E-value=2.24776e-09,     Score=153

KEGG

105842745    no KO assigned | (RefSeq) transcription initiation factor TFIID subunit 4-like

GO

GO:0008270   GO:0003676   GO:0003964   GO:0004523   GO:0016021   GO:0050482   GO:0009451   GO:0009982   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

1167

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.19251

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  1167

 

 

Pi

114.052741

Theta

143.191897

Tajima's D

2.418359

CLR

0.668182

CSRT

0.938103094845258

Interpretation

Uncertain