Gene

KWMTBOMO14751  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003820

Annotation

PREDICTED:_uncharacterized_protein_LOC106099995_[Papilio_polytes]

Location

Bomo_Chr24(-):14229568-14238026      View in EpiBrowser

Full name

DNA-directed RNA polymerases I, II, and III subunit RPABC3      

Location in the cell

Cytoplasmic   Reliability : 2.216

CDS

ATGGCGGGTGTGCTATTCGAGGACATTTTCAACGTCAAAGACATGGATCCGGAGGGCAAAAAGTTCGACAGAGTCAGCCGATTGCATTGCGAATCGGAATCATTCAAAATGGATTTAATATTGGACATTAATTCTTGGATATATCCAATGCAATTAGGCGAAAAGTTTCGTTTAGTTTTGGCCACGACGTTGAGGGAAAACGGATACCCTGACGGCGGAGAATGGAACCCTCTGGAGACCGAAGGAAATCGAGCAGATAGTTTCGAATATGTCATGTCCGGAAAAGTATACAGGATAGAAGGTGACGAGGCAGCGATGGAGCCGGCATCCAGATTAGCGGCCTACGTCTCGTTCGGTGGCCTCCTGATGCGGCTGCAAGGGGACGCGAACAACTTGCACGGCTTCGAAGTTGATCAGCACATGTATTTGTTGATGAAGAAATTAGCGTTTTAG

Protein

MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKKLAF

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.

Similarity

Belongs to the eukaryotic RPB8 RNA polymerase subunit family.

Uniprot

H9J2T3   A0A0N1I8L1   A0A194Q2H6   A0A2W1B5H3   A0A2A4K1E5   A0A1E1WME6   + More
S4PWZ0   A0A212EMW2   A0A026W549   A0A3L8D2Y9   A0A1W4X9D9   A0A1Y1LLP0   A0A0L7LV06   D6WSM3   A0A0C9QNH8   J3JXT6   A0A195EBT4   A0A195BX92   A0A151JWF0   A0A158NIT5   A0A1I8MUR1   A0A0L0C8D4   W8BYF3   A0A0K8VLK2   A0A034WLP6   A0A0A1WGJ6   A0A2H1VJ91   A0A1B0GF67   A0A1A9XJX2   A0A1A9UKP3   A0A1B0BW09   A0A1I8PU35   A0A1L8EGV1   B3MAS1   K7J303   A0A3B0J3Z8   Q2M0A5   B4GRW5   B4IAU7   B4QK93   A0A1W4UEQ1   B3NIY5   Q9VNZ3   B4ITD0   A0A151WV02   A0A1L8DH21   A0A1B0D009   A0A1B0CWD7   B4KUW6   B4IYV0   B4LD87   E0VGE5   B4MNF8   A0A1B6DM96   Q17NL0   A0A182GNY2   U5EXL2   A0A1Q3F1T1   B0WFP1   C1BRY6   C1BP22   A0A182S8D0   A0A1A9W5X9   A0A182Y1H7   A0A182P5W0   A0A182QJF8   A0A182VIF7   A0A182MYT7   A0A182TWJ3   A0A182WZT1   A0A182KSA8   Q7Q0D5   A0A182HQC7   A0A1A9ZDV3   A0A023F9T8   A0A2M4APN9   A0A182FBD1   A0A2M4C2F2   T1GT39   R4G4E2   W5JFU4   A0A182MAU9   A0A182RD05   A0A182WEY2   A0A023EGQ6   A0A0P4VS22   A0A0A9WMJ6   A0A0P6GSG7   E9FWX2   A0A0P5ARI4   A0A1J1ILQ6   A0A2B4S6K0   A7S8M4   A0A3M6U4T3   A0A131Z464   A0A224XZD7   S4RV21   A0A3Q3A4A1   V9LAR7   A0A2I4AHQ9  

Pubmed

19121390    26354079    28756777    23622113    22118469    24508170    + More
30249741    28004739    26227816    18362917    19820115    22516182    21347285    25315136    26108605    24495485    25348373    25830018    17994087    20075255    15632085    22936249    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    20566863    17510324    26483478    25244985    20966253    12364791    14747013    17210077    25474469    20920257    23761445    24945155    27129103    25401762    26823975    21292972    17615350    30382153    26830274    24402279   

EMBL

BABH01036908    BABH01036909    KQ460735    KPJ12618.1    KQ459580    KPI99199.1    + More
KZ150307    PZC71492.1    NWSH01000242    PCG78067.1    GDQN01002861    JAT88193.1    GAIX01005953    JAA86607.1    AGBW02013797    OWR42806.1    KK107405    EZA51205.1    QOIP01000014    RLU14867.1    GEZM01058089    GEZM01058088    JAV71917.1    JTDY01000027    KOB79333.1    KQ971354    EFA05896.1    GBYB01005129    JAG74896.1    BT128057    AEE63018.1    KQ979074    KYN22693.1    KQ976394    KYM93259.1    KQ981667    KYN38453.1    ADTU01017130    ADTU01017131    ADTU01017132    ADTU01017133    ADTU01017134    ADTU01017135    ADTU01017136    ADTU01017137    ADTU01017138    ADTU01017139    JRES01000760    KNC28505.1    GAMC01000140    JAC06416.1    GDHF01012591    JAI39723.1    GAKP01002451    JAC56501.1    GBXI01016672    JAC97619.1    ODYU01002860    SOQ40866.1    CCAG010012766    JXJN01021562    GFDG01000953    JAV17846.1    CH902618    EDV39155.1    OUUW01000002    SPP76147.1    CH379069    EAL31030.1    CH479188    EDW40500.1    CH480826    EDW44410.1    CM000363    CM002912    EDX11430.1    KMZ01082.1    CH954178    EDV52702.1    AE014296    AY060855    AAF51770.1    AAL28403.1    CM000159    CH891690    EDW94978.1    EDW99643.1    KQ982730    KYQ51531.1    GFDF01008399    JAV05685.1    AJVK01009800    AJWK01032248    CH933809    EDW19372.1    CH916366    EDV96637.1    CH940647    EDW70994.1    KRF85233.1    DS235138    EEB12451.1    CH963847    EDW72667.1    GEDC01010462    JAS26836.1    CH477198    EAT48304.1    JXUM01077333    KQ563002    KXJ74660.1    GANO01000899    JAB58972.1    GFDL01013530    JAV21515.1    DS231920    DS233029    EDS26385.1    EDS27600.1    BT077365    BT120719    BT121273    ACO11789.1    ADD24359.1    ADD38203.1    BT076351    ACO10775.1    AXCN02001025    AAAB01008986    EAA00358.2    APCN01003308    GBBI01000552    JAC18160.1    GGFK01009440    MBW42761.1    GGFJ01010332    MBW59473.1    CAQQ02001002    ACPB03014176    GAHY01000846    JAA76664.1    ADMH02001278    ETN63247.1    AXCM01003008    GAPW01005592    JAC08006.1    GDKW01001364    JAI55231.1    GBHO01033933    GBHO01033932    GDHC01011322    JAG09671.1    JAG09672.1    JAQ07307.1    GDIQ01029290    LRGB01001361    JAN65447.1    KZS12363.1    GL732526    EFX88360.1    GDIP01199894    JAJ23508.1    CVRI01000050    CRK99393.1    LSMT01000176    PFX24430.1    DS469598    EDO40011.1    RCHS01002246    RMX48621.1    GEDV01003007    JAP85550.1    GFTR01002436    JAW13990.1    JW876309    AFP08826.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000007151    UP000053097    + More
UP000279307    UP000192223    UP000037510    UP000007266    UP000078492    UP000078540    UP000078541    UP000005205    UP000095301    UP000037069    UP000092444    UP000092443    UP000078200    UP000092460    UP000095300    UP000007801    UP000002358    UP000268350    UP000001819    UP000008744    UP000001292    UP000000304    UP000192221    UP000008711    UP000000803    UP000002282    UP000075809    UP000092462    UP000092461    UP000009192    UP000001070    UP000008792    UP000009046    UP000007798    UP000008820    UP000069940    UP000249989    UP000002320    UP000075901    UP000091820    UP000076408    UP000075885    UP000075886    UP000075903    UP000075884    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000092445    UP000069272    UP000015102    UP000015103    UP000000673    UP000075883    UP000075900    UP000075920    UP000076858    UP000000305    UP000183832    UP000225706    UP000001593    UP000275408    UP000245300    UP000264800    UP000192220   

PRIDE

H9J2T3    Q9VNZ3   

Pfam

PF03870   RNA_pol_Rpb8        + More
PF00057   Ldl_recept_a
PF00084   Sushi

Interpro

IPR005570   RNA_pol_Rpb8        + More
IPR012340   NA-bd_OB-fold       
IPR023415   LDLR_class-A_CS       
IPR000436   Sushi_SCR_CCP_dom       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
IPR035976   Sushi/SCR/CCP_sf       

SUPFAM

SSF50249   SSF50249        + More
SSF57535   SSF57535       
SSF57424   SSF57424       

Gene 3D

4.10.400.10    

CDD

cd00112  LDLa
cd00033  CCP

ProteinModelPortal

H9J2T3   A0A0N1I8L1   A0A194Q2H6   A0A2W1B5H3   A0A2A4K1E5   A0A1E1WME6   + More
S4PWZ0   A0A212EMW2   A0A026W549   A0A3L8D2Y9   A0A1W4X9D9   A0A1Y1LLP0   A0A0L7LV06   D6WSM3   A0A0C9QNH8   J3JXT6   A0A195EBT4   A0A195BX92   A0A151JWF0   A0A158NIT5   A0A1I8MUR1   A0A0L0C8D4   W8BYF3   A0A0K8VLK2   A0A034WLP6   A0A0A1WGJ6   A0A2H1VJ91   A0A1B0GF67   A0A1A9XJX2   A0A1A9UKP3   A0A1B0BW09   A0A1I8PU35   A0A1L8EGV1   B3MAS1   K7J303   A0A3B0J3Z8   Q2M0A5   B4GRW5   B4IAU7   B4QK93   A0A1W4UEQ1   B3NIY5   Q9VNZ3   B4ITD0   A0A151WV02   A0A1L8DH21   A0A1B0D009   A0A1B0CWD7   B4KUW6   B4IYV0   B4LD87   E0VGE5   B4MNF8   A0A1B6DM96   Q17NL0   A0A182GNY2   U5EXL2   A0A1Q3F1T1   B0WFP1   C1BRY6   C1BP22   A0A182S8D0   A0A1A9W5X9   A0A182Y1H7   A0A182P5W0   A0A182QJF8   A0A182VIF7   A0A182MYT7   A0A182TWJ3   A0A182WZT1   A0A182KSA8   Q7Q0D5   A0A182HQC7   A0A1A9ZDV3   A0A023F9T8   A0A2M4APN9   A0A182FBD1   A0A2M4C2F2   T1GT39   R4G4E2   W5JFU4   A0A182MAU9   A0A182RD05   A0A182WEY2   A0A023EGQ6   A0A0P4VS22   A0A0A9WMJ6   A0A0P6GSG7   E9FWX2   A0A0P5ARI4   A0A1J1ILQ6   A0A2B4S6K0   A7S8M4   A0A3M6U4T3   A0A131Z464   A0A224XZD7   S4RV21   A0A3Q3A4A1   V9LAR7   A0A2I4AHQ9  

PDB

6O9L     E-value=1.79074e-62,     Score=601

KEGG

101744611    K03016 DNA-directed RNA polymerases I, II, and III subunit RPABC3 | (RefSeq) DNA-directed RNA polyme

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0005665   GO:0006383   GO:0006366   GO:0005666   GO:0005736   GO:0003899   GO:0006351   GO:0006360   GO:0003700   GO:0005634   GO:0005667   GO:0005737   GO:0006355   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR10917  

Length:

150

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0078

Exp number, first 60 AAs:

0.00039

Total prob of N-in:

0.02744

outside

1  -  150

 

 

Pi

462.668776

Theta

215.704625

Tajima's D

3.539415

CLR

0.207607

CSRT

0.994300284985751

Interpretation

Uncertain