Gene

KWMTBOMO14749

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(+):14144262-14146393      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.029 Nuclear   Reliability : 1.88

CDS

ATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTAAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAGAAGAACTCGCGCCCACTCACCAAGCATACTGGCAACTAGCTAGGACCCTCAAGTCCGAAACTATAGCCACTATGCCGCCTCTCGTACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTACAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAATTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAACAAAATTCTGATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATTAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAGGCGCGTCAACACCCCCGCCCCCGCCGTTCGCCCAATCACGATGTACGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGATCGTGCCGCCTTCATCCTAGGACGCCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTTAG

Protein

MRRLQREVKSRLSDARNENWDSYLEELAPTHQAYWQLARTLKSETIATMPPLVRPSGQPPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESIS

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139W8G9   A0A139WA11   A0A2S2PR14   V5GNF3   J9KKL3   V5GNJ2   X1WMU5   A0A3N5Z7I3   X1WWC4   X1WLB2   Q07995   A0A087U2S8   A0A224XF24   J9KC83   A0A023EZE6   A0A023EYS8   A0A2S2PPK8   X1WXU3   A0A2S2QJM7   A0A2J7R7D0   A0A2S2PX53   A0A2S2NGV8   A0A2S2Q823   A0A2S2PH29   A0A2S2Q383   A0A2J7R8R8   A0A182GA28   A0A2M4BEF4   A0A2M4BEZ9   A0A1Y1M7E9   A0A2H8U0H5   A0A2J7PVX3   A0A2J7PDM0   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   J9M522   A0A2S2QEE0   A0A023F6S4   A0A2J7RB54   A0A0L0CBP5   A0A2M4CV52   A0A2M4CV42   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7RIW7   A0A1Y1LKN6   A0A2J7QUJ9   A0A2S2QTZ8   A0A0C9RJA4   A0A2J7PMP6   A0A2J7Q059   A0A2J7R579   A0A2J7QPI2   A0A2J7RS77   A0A2S2Q352   A0A2J7RPU2   A0A2J7PMP9   A0A2J7R4B1   D7EM17   A0A2S2N814   A0A1L8DIZ6   A0A0J7K4E0   A0A2J7Q0Q6   J9LC21   A0A2A4K8E7   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7R2E1   A0A182GMD9   A0A2H8TWD9   A0A2J7R6U1   A0A2S2P698   A0A2J7QFL0   O76197   A0A2J7RKP3   A0A0A9YJ00   A0A2J7QB68   A0A0A9YU04   A0A2M4BD67   A0A2S2N629   A0A2J7QR37   A0A0J7KBP6   A0A224XB44   A0A087UGF5   A0A2M4BDV6   A0A2J7Q2R1   A0A224X6Q4  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
30086797    8387152    25474469    26483478    26108605    8934517    25401762   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    ABLF02029306    ABLF02029314    ABLF02060138    GALX01005299    JAB63167.1    ABLF02014862    ABLF02014866    ABLF02061908    RPOV01000134    RPJ78669.1    ABLF02003961    ABLF02059872    ABLF02042518    ABLF02057746    S59870    AAB26437.2    KK117880    KFM71667.1    GFTR01008038    JAW08388.1    ABLF02033757    GBBI01004571    JAC14141.1    GBBI01004395    JAC14317.1    GGMR01018716    MBY31335.1    ABLF02008933    GGMS01008766    MBY77969.1    NEVH01006736    PNF36716.1    GGMS01000737    MBY69940.1    GGMR01003407    MBY16026.1    GGMS01004685    MBY73888.1    GGMR01016114    MBY28733.1    GGMS01002992    MBY72195.1    NEVH01006721    PNF37225.1    JXUM01155316    KQ572171    KXJ68070.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GEZM01038405    JAV81653.1    GFXV01007093    MBW18898.1    NEVH01020940    PNF20481.1    NEVH01026386    PNF14434.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    ABLF02024246    GGMS01006359    MBY75562.1    GBBI01001646    JAC17066.1    NEVH01005938    PNF38077.1    JRES01000644    KNC29657.1    GGFL01004957    MBW69135.1    GGFL01005012    MBW69190.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01003017    PNF40781.1    GEZM01053022    JAV74219.1    NEVH01010546    PNF32261.1    GGMS01012005    MBY81208.1    GBYB01008290    JAG78057.1    NEVH01023962    PNF17612.1    NEVH01020071    PNF21969.1    NEVH01007393    PNF35987.1    NEVH01012089    PNF30491.1    NEVH01000280    PNF43672.1    GGMS01002955    MBY72158.1    NEVH01001355    PNF42855.1    NEVH01023961    PNF17613.1    NEVH01007578    PNF35646.1    KQ973412    EFA12510.2    GGMR01000676    MBY13295.1    GFDF01007661    JAV06423.1    LBMM01014395    KMQ85192.1    NEVH01019964    PNF22161.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NWSH01000032    PCG80497.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01007838    PNF34986.1    JXUM01014072    KQ560393    KXJ82651.1    GFXV01006424    MBW18229.1    NEVH01006754    PNF36554.1    GGMR01012305    MBY24924.1    NEVH01014858    PNF27387.1    AF012049    AAC24972.1    NEVH01002716    PNF41415.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01016302    PNF25823.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGFJ01001858    MBW50999.1    GGMR01000005    MBY12624.1    NEVH01011985    PNF31054.1    LBMM01010106    KMQ87671.1    GFTR01008262    JAW08164.1    KK119692    KFM76444.1    GGFJ01001857    MBW50998.1    NEVH01019080    PNF22876.1    GFTR01008279    JAW08147.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000069940    + More
UP000249989    UP000037069    UP000036403    UP000218220   

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A0N0PA09   + More
A0A1Y1NA23   A0A139W8G9   A0A139WA11   A0A2S2PR14   V5GNF3   J9KKL3   V5GNJ2   X1WMU5   A0A3N5Z7I3   X1WWC4   X1WLB2   Q07995   A0A087U2S8   A0A224XF24   J9KC83   A0A023EZE6   A0A023EYS8   A0A2S2PPK8   X1WXU3   A0A2S2QJM7   A0A2J7R7D0   A0A2S2PX53   A0A2S2NGV8   A0A2S2Q823   A0A2S2PH29   A0A2S2Q383   A0A2J7R8R8   A0A182GA28   A0A2M4BEF4   A0A2M4BEZ9   A0A1Y1M7E9   A0A2H8U0H5   A0A2J7PVX3   A0A2J7PDM0   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   J9M522   A0A2S2QEE0   A0A023F6S4   A0A2J7RB54   A0A0L0CBP5   A0A2M4CV52   A0A2M4CV42   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7RIW7   A0A1Y1LKN6   A0A2J7QUJ9   A0A2S2QTZ8   A0A0C9RJA4   A0A2J7PMP6   A0A2J7Q059   A0A2J7R579   A0A2J7QPI2   A0A2J7RS77   A0A2S2Q352   A0A2J7RPU2   A0A2J7PMP9   A0A2J7R4B1   D7EM17   A0A2S2N814   A0A1L8DIZ6   A0A0J7K4E0   A0A2J7Q0Q6   J9LC21   A0A2A4K8E7   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7R2E1   A0A182GMD9   A0A2H8TWD9   A0A2J7R6U1   A0A2S2P698   A0A2J7QFL0   O76197   A0A2J7RKP3   A0A0A9YJ00   A0A2J7QB68   A0A0A9YU04   A0A2M4BD67   A0A2S2N629   A0A2J7QR37   A0A0J7KBP6   A0A224XB44   A0A087UGF5   A0A2M4BDV6   A0A2J7Q2R1   A0A224X6Q4  

PDB

6AR3     E-value=0.00196922,     Score=99

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

548

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.94726999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20581

outside

1  -  548

 

 

Pi

126.222479

Theta

13.612281

Tajima's D

5.106053

CLR

0

CSRT

0.999950002499875

Interpretation

Possibly Balancing Selection