Silkworm Genome Informatics Database

Gene

KWMTBOMO14748

Annotation

PREDICTED:_single-minded_homolog_1_[Bombyx_mori]

Location

Bomo_Chr24(-):14123854-14127461 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.099

CDS

ATGCCATCGGTGGCAGCCCTAACTGGATACGAGCCACAGGATCTAATCGAGAAGACGTTGTACAACTTTATACACGGAACCGATGTACTTCATATGAGATATTCCCATTGTACATTACTGACAAAAGGTCAAGTGACGTCACAGTACTACCGTTTCTTGACCAAATCCGGCGGCTGGGTGTGGATGCAGAGCTACGCGACCATTGTGCACAACTCTAGGTCGTCCAGGCCTCACTGCATCGTGTCTGTTAATTATGTTTTGAGCGAAATCGAAGAGAAACATCTCATCTTGAACATCGATCAGGTGCCGCCGAAACTGAACCACGATGCGCCCACCCCGTCCCACGTGCCGACCACCACCACGTCTCCCCAGATGCACATTAGACACACAGACAAAATAAACCACATACATTTAGATAGCGAGTTCAGCGGCGACTCGAGCGGTGGGTACACATACTCGGAGTACGCCCTGCCGGTGATACCGACCTACGAGAACCAGGACGACTACCATCACCAGCAAAACGGCTATCAAGAGCTCTTCTACAACGAAAACTACACCGAACCGGAGGTCATACAGAACAGCTACGTGAGCTACCCCCAAAATCAGAGACCTTTTTCGGCCAGCTCCTCATCGTGCAGTTCAATAGAAGGCTCTGAGGTCACGAATCAATATAACTACACGAATTTGATATCGTTTTATCCCAATCAAAACGGTAGGCCGGTTGTGGACGGGAATTTTAGTAATTTCGGTAAGATGACCCCGAGTCCCTCGGTCCAGGAAGGATACACCAGCGTCATAGTGGACAACACGCAGCAGTTCCACCACCACGGAGGTGCGGTGAATGAATTTGTTCATTGA

Protein

MPSVAALTGYEPQDLIEKTLYNFIHGTDVLHMRYSHCTLLTKGQVTSQYYRFLTKSGGWVWMQSYATIVHNSRSSRPHCIVSVNYVLSEIEEKHLILNIDQVPPKLNHDAPTPSHVPTTTTSPQMHIRHTDKINHIHLDSEFSGDSSGGYTYSEYALPVIPTYENQDDYHHQQNGYQELFYNENYTEPEVIQNSYVSYPQNQRPFSASSSSCSSIEGSEVTNQYNYTNLISFYPNQNGRPVVDGNFSNFGKMTPSPSVQEGYTSVIVDNTQQFHHHGGAVNEFVH

Uniprot

A0A3S2NEK8 A0A0N1IFA4 S4PVP0 A0A2W1B5N6 A0A2A4K220 A0A2H1VVZ3 + More
A0A212F8X1 A0A212F594 A0A194Q1J7 A0A0F7II89 D6X4Q5 A0A1B6LAG7 A0A1B6K0I5 A0A1B6IIL4

Pubmed

26354079 23622113 28756777 22118469 18362917 19820115 + More

EMBL

RSAL01000072 RVE49077.1 KQ460735 KPJ12617.1 GAIX01008203 JAA84357.1 + More
KZ150307 PZC71489.1 NWSH01000242 PCG78066.1 ODYU01004781 SOQ45021.1 AGBW02009662 OWR50177.1 AGBW02010216 OWR48911.1 KQ459580 KPI99198.1 KP147936 AKG92773.1 KQ971380 EEZ97660.2 GEBQ01019265 JAT20712.1 GECU01002752 JAT04955.1 GECU01020951 JAS86755.1

Proteomes

UP000283053 UP000053240 UP000218220 UP000007151 UP000053268 UP000007266 + More

Pfam

PF00989   PAS        + More
PF08447   PAS_3
PF00010   HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR000014   PAS
IPR035965   PAS-like_dom_sf
IPR001610   PAC
IPR013767   PAS_fold
IPR013655   PAS_fold_3
IPR011598   bHLH_dom
IPR001067   Nuc_translocat

SUPFAM

SSF55785 SSF55785 + More
SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH
cd00130 PAS

ProteinModelPortal

A0A3S2NEK8 A0A0N1IFA4 S4PVP0 A0A2W1B5N6 A0A2A4K220 A0A2H1VVZ3 + More
A0A212F8X1 A0A212F594 A0A194Q1J7 A0A0F7II89 D6X4Q5 A0A1B6LAG7 A0A1B6K0I5 A0A1B6IIL4

PDB

6E3T E-value=3.88299e-21, Score=249

KEGG

101735872 K09100 single-minded | (RefSeq) single-minded homolog 1

GO

GO:0003677 GO:0005634 GO:0005667 GO:0003700 GO:0005737 GO:0046983 GO:0005515 GO:0005488 GO:0003676 GO:0008017 GO:0006886 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00401

Exp number, first 60 AAs:

0.00228

Total prob of N-in:

0.01358

outside

1 - 285

Pi

365.753667

Theta

218.259739

Tajima's D

2.75269

CLR

0.057963

CSRT

0.965051747412629

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics