Silkworm Genome Informatics Database

Gene

KWMTBOMO14739

Annotation

PREDICTED:_E3_SUMO-protein_ligase_RanBP2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(-):13923583-13924531 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.204 Nuclear Reliability : 2.025

CDS

ATGTATCGTAACTTCGAACAGTGGACGCAACAAAATCGGCAAATTTACGCGACTAACATCAACCTGTTGTTCAATATAAAGAGACAACATTTTTTACGTGGTAAAGTTGATTGCAACTGGTTGAAGTTACCGGTCAGACCTAAAAGACACGACGCCCGGTCACATTACTTTAAGGAAATACGTAAAGATAATTTGCAGCTTTACAAACGTATCGTCAAAGCGGTAAAATATAATTCATTCTTGAAACGGGGTACCGGTTGTCCCCCTCAAGGGGGATCGACGATTTGTTGGGGATCCGTTGAGTAG

Protein

MYRNFEQWTQQNRQIYATNINLLFNIKRQHFLRGKVDCNWLKLPVRPKRHDARSHYFKEIRKDNLQLYKRIVKAVKYNSFLKRGTGCPPQGGSTICWGSVE

Uniprot

A0A2A4IYK9 A0A194Q0T1 A0A194R4M1

Pubmed

26354079

EMBL

NWSH01005009 PCG64498.1 KQ459580 KPI99192.1 KQ460685 KPJ12763.1 + More

Proteomes

UP000218220 UP000053268 UP000053240

Pfam

PF00160 Pro_isomerase

Interpro

IPR015940   UBA        + More
IPR009060   UBA-like_sf
IPR029000   Cyclophilin-like_dom_sf
IPR002130   Cyclophilin-type_PPIase_dom

SUPFAM

SSF50891 SSF50891 + More
SSF46934 SSF46934

Gene 3D

2.40.100.10

ProteinModelPortal

A0A2A4IYK9 A0A194Q0T1 A0A194R4M1

KEGG

101743933 no KO assigned | (RefSeq) ubiquitin-associated domain-containing protein 1

GO

GO:0003755

Length:

101

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00588

Exp number, first 60 AAs:

0.00506

Total prob of N-in:

0.53021

inside

1 - 101

Pi

187.463739

Theta

125.333505

Tajima's D

1.408688

CLR

0

CSRT

0.765361731913404

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics