SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14728
Pre Gene Modal
BGIBMGA004212
Annotation
PREDICTED:_uncharacterized_protein_LOC105386246?_partial_[Plutella_xylostella]
Location
Bomo_Chr24(+):13809308-13813560      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.833
 

Sequence

CDS
ATGGAAGATATTCTATACACCCAACAACAACTGCTCGAGGCAATAGAGCAGCTTTATACAAATTTCAAAAAAGATGGTTCCGACCGTAAGACTTCCGACTACCTCAGGCGAAGGCTGGAGACGCTTAACCAATACTGGCAGGAATTTCAGTTTAATCATAAAAAGCTATTAAGCATAGAATACATCAAATCTCATTCGTACTATACTAGCAATCAGTACACCATATTTAAAGACAAATACGAACATATCCGTGCTGTAATAACCAATTATCAGCCAAAAGATGATAGGCCATCAACACCGGTTGTAAAACCAGCAACACCAGTATCAGTTCCTGGAACATCAAAACAGTTGCCAGTTCAATCAACTGGCAAAAACAGTAAAACCGATGAGCTGCTGCGAAAACAACGTAGCAACTACAAGGCATTCGAGCATACTGTTGCTAACACCAACTTGGACCTTATCACCGAAAAGTGGGAGTTTGATAATCTCCTACGTAACATTCAATCTCGGTGGACATTGATCGATGCCTCGCACTGGGAGTTGGATAGTGAGCTCGGGCCGAACAACAAAGAAGAGGATACTCTGTACTTGCAGTTTGAAAAAACTTTTAATGATATTATTAAGGCAGTCAACAAAAAGATGTGCTCGGTCTCCCACCGAGAGAAGTCCACTCCTCAAGTAGAGATACCAATTTTCAACGGAAGTTACCACAACTGGACATCTTTTAAAGATCTTTTTACGGAAACTATACACAGTAACCCGTCTCTTTCGAATGCTCAGAAAATGCAGTTCCTTAAAACAAAGGTTAAAGGTGAAGCAGAGAAATTGATTCAACATTTATCAATAAGTTCCGATAATTATATAATATGCTGGGATATATTGAACCACAGATTTAATAATGAAAGACTGATATTCAGCGCTCACGTCGACATTCTAATGAGCATACCAACAGGACAACAACCATCGATTAACCATATTAAACGCATACATGACACAACATTAGAAAGCCTCAACGCTATAAAAAACCTAGGTGTAAATGTGGAGTCTTGGAGCCCTTTGATTGTACATCTTTTAGCACAAAAATTAGATACCGAGACGTACAGGGAATATATATCATTCATTAAAAACCCGAGAGAACTACCAAAATTACAAGAATTCCTAGATTTCTTGGAGGATCATAATACACTTCTTCACGACGCTTACGACAAATGGGGCGGAAAGACATCAAACAACAGATCAGTGCAGCAAAACACAGCCGTCGCTGATAGCAAGAAAACTAGTAGCACTAACGCCAATCATGTGTCTCAAGAAGACGTATCAGAAACTCTGCTTACCACAGCATTAATCAACGTGCAAGCAAACGATGGGTCACTGATAACTTTGCGAGCGCTCCTTGATCAGGGTTCACAAACATCCCTGATAACGGAAAAAGCAGCGCAAAAGCTACGAATACCACGTGGCCGCTGCAAAGGGGTCATATTCGGCGTCGGAGCTAAAGAAAATAATTGCAAAGGCGTCATAAGAATCACGTGCAGTGCCATTTATACTGATTATACATTTGACACCGATGTTTTCATTATGCGCAATTTAATAAACAATTTGCCGAATAGATCATTTACAAAGCCAAAATCATGGAAGTTTTTAGAGAGCATCACGTTGGCTGATCCAGATTTTAATGAAAGTCGCCCTGTAGACATTTTACTTGGGGCCGATATATACTCAAACATTATTCAAGAAGGTATCATCAGGCACGAAAAATCACAACCAGTTGCACAACAAACGCGCTTGGGCTGGATTCTATGCGGGACCGTGCAGAGAACATTCCAGTGCAACGTTGTGATAAATAACATCGATGACATTCGACAGTTTTGGTCAGTTGAAGCCATAGCAGAAAACTCGAGGATGTCACAGGATGATCTGGATTGTTTGCAGCACTATAAGAACACAACAGCTCGTAACGAAGAAGGTCGTTACACTGTTGAGCTGCCATTCATACCAAACTTTCAAGAAAAACTAGGAGCTTCGAAACCCATGGCTTTGGCACAATTCCGGCAACTTGAGAGGAAATTTAGCAAACAACCACAATTAGCAGAATCATACAGACAGTTCATTCATGAATATCAGGCAATGAATCATATGCGTATTTGTGTACTGTATGAGAGTGTGTTATAG
Protein
MEDILYTQQQLLEAIEQLYTNFKKDGSDRKTSDYLRRRLETLNQYWQEFQFNHKKLLSIEYIKSHSYYTSNQYTIFKDKYEHIRAVITNYQPKDDRPSTPVVKPATPVSVPGTSKQLPVQSTGKNSKTDELLRKQRSNYKAFEHTVANTNLDLITEKWEFDNLLRNIQSRWTLIDASHWELDSELGPNNKEEDTLYLQFEKTFNDIIKAVNKKMCSVSHREKSTPQVEIPIFNGSYHNWTSFKDLFTETIHSNPSLSNAQKMQFLKTKVKGEAEKLIQHLSISSDNYIICWDILNHRFNNERLIFSAHVDILMSIPTGQQPSINHIKRIHDTTLESLNAIKNLGVNVESWSPLIVHLLAQKLDTETYREYISFIKNPRELPKLQEFLDFLEDHNTLLHDAYDKWGGKTSNNRSVQQNTAVADSKKTSSTNANHVSQEDVSETLLTTALINVQANDGSLITLRALLDQGSQTSLITEKAAQKLRIPRGRCKGVIFGVGAKENNCKGVIRITCSAIYTDYTFDTDVFIMRNLINNLPNRSFTKPKSWKFLESITLADPDFNESRPVDILLGADIYSNIIQEGIIRHEKSQPVAQQTRLGWILCGTVQRTFQCNVVINNIDDIRQFWSVEAIAENSRMSQDDLDCLQHYKNTTARNEEGRYTVELPFIPNFQEKLGASKPMALAQFRQLERKFSKQPQLAESYRQFIHEYQAMNHMRICVLYESVL

Summary

Uniprot
A0A0L7LEF0   A0A0L7L8M8   A0A0L7KJM0   A0A0J7MWT6   A0A0J7KNI7   A0A0J7K9A7   + More
A0A3L8DLE0   A0A151IQ50   D7GYB7   A0A151IR94   A0A3L8D6F4   J9JW47   A0A0J7KS64   X1XD21   A0A336MSH8  
Pubmed
26227816    30249741    18362917    19820115   
EMBL
JTDY01001478    KOB73775.1    JTDY01002318    KOB71669.1    JTDY01009666    KOB63104.1    + More
LBMM01015133    KMQ84915.1    LBMM01005112    KMQ91804.1    LBMM01011283    KMQ86917.1    QOIP01000006    RLU21201.1    KQ976790    KYN08275.1    GG695382    EFA13346.1    KQ981142    KYN09177.1    QOIP01000012    RLU15613.1    ABLF02004942    LBMM01003740    KMQ93188.1    ABLF02006087    ABLF02006089    ABLF02057197    UFQS01001097    UFQT01001097    SSX08987.1    SSX28898.1   
Proteomes
UP000037510    UP000036403    UP000279307    UP000078542    UP000007266    UP000078492    + More
UP000007819   
Pfam
PF03564   DUF1759        + More
PF05585   DUF1758
PF05380   Peptidase_A17
PF17921   Integrase_H2C2
PF00665   rve
PF18701   DUF5641
Interpro
IPR005312   DUF1759        + More
IPR008737   Peptidase_asp_put       
IPR021109   Peptidase_aspartic_dom_sf       
IPR008042   Retrotrans_Pao       
IPR001995   Peptidase_A2_cat       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR040676   DUF5641       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
Gene 3D
2.40.70.10     3.30.420.10    
ProteinModelPortal
A0A0L7LEF0   A0A0L7L8M8   A0A0L7KJM0   A0A0J7MWT6   A0A0J7KNI7   A0A0J7K9A7   + More
A0A3L8DLE0   A0A151IQ50   D7GYB7   A0A151IR94   A0A3L8D6F4   J9JW47   A0A0J7KS64   X1XD21   A0A336MSH8  

Ontologies

KEGG
101736405    K18809 protein toll | (RefSeq) protein toll-like
PATHWAY
04624    Toll and Imd signaling pathway - Bombyx mori (domestic silkworm)
GO
GO:0004190   GO:0015074   GO:0003676  

Topology

Length:
723
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000570000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00028
outside
1  -  723
 
 

Population Genetic Test Statistics

Pi
308.858262
Theta
173.543306
Tajima's D
2.354791
CLR
0.427967
CSRT
0.932303384830758
Interpretation
Uncertain
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