Gene

KWMTBOMO14705  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009625

Annotation

PREDICTED:_RNA-binding_protein_25_[Bombyx_mori]

Location

Bomo_Chr24(+):13001974-13003669      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.353

CDS

ATGAGGCCACATAAAGAGAAAAAAGACAAAGAAAAAGCGGACAAAGAAAAGAAGAAGAACAGTGACGGAGACAAGGAGAACAAGAGCTCCGAGGAGAAACGGAAACACATCAAGAGTCTCATCGACAAGATCCCCACGCAGAAGGAACAACTGTTCCAGTACAAACTGGACGCCTCGCAGATCGATAACACGCTCATGGAGAAGAAGATACGTCCATGGATCAACAAGAAGATCATAGAGTACATCGGCGAGCCGGAGCCCACTCTCGTCGACTTCATCTGCAGCAAAGTGCTCGCCGGCTCCGCGCCCCAGGGAGTGCTCGACGACGTGCAGATGGTGCTGGACGAGGAGGCGGAGGTGTTCGTGGTGAAGATGTGGCGGCTGCTCATCTACGAGCTGGAGGCCAAGCGCGCCGGCCTGCACAAGTGA

Protein

MRPHKEKKDKEKADKEKKKNSDGDKENKSSEEKRKHIKSLIDKIPTQKEQLFQYKLDASQIDNTLMEKKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGSAPQGVLDDVQMVLDEEAEVFVVKMWRLLIYELEAKRAGLHK

Uniprot

H9JJC4   A0A2H1WXP0   A0A3S2TAK1   A0A2W1B0J3   A0A1E1W423   A0A0N0PCP6   + More
A0A212ENX9   A0A0K8W9T8   A0A1B0CAP9   A0A1B6IFW1   A0A0A9XI46   A0A2J7R980   A0A1L8DHA8   A0A151WMA5   A0A0J7L828   A0A195CAC2   E9J569   A0A026WPD8   A0A2J7R984   A0A154PDG6   E2C9R8   A0A0L7RHS2   T1P8W8   A0A195B0T1   A0A0C9QZH4   A0A088AGZ0   A0A2A3ESM0   A0A195EU96   A0A158NR25   A0A195E6L0   F4WPA0   A0A310SAB0   A0A1B6L094   A0A2P8XVW8   A0A1B6FZ11   A0A023FGJ6   A0A2J7R986   A0A0K8U173   A0A1A9USU6   A0A1I8P2M5   A0A1A9ZQG6   A0A1B0FFE4   A0A1B0BCU4   A0A1I8MAX5   A0A1A9YJ90   A0A1A9W900   A0A0L0C622   W8C943   A0A1Y1L015   A0A034W599   A0A0C9PX77   B4H4G4   B4R506   A0A232FKT1   B4I0M0   K7IQ34   B5DLW5   A0A3B0K674   A0A0P4VP07   A0A0A9XF17   Q9V3Y5   A0A0A9WNG6   E2ATS2   A0A1B6IXZ0   A0A3B0K8G8   A0A069DZK1   B4M805   A0A2J7R987   V5FXN4   B3MRX5   A0A1W4VTH4   A0A1B6C558   B4L643   B4JKI3   A0A1B6EE52   A0A336MEU6   A0A336MGC6   A0A0M3QZS5   B4MSG4   E0VC25   N6SXF3   B3NV67   A0A1Y1L023   A0A1Y1L4U4   A0A3Q0IXJ1   A0A084WTV1   A0A0R1E968   B4PZC9   U4URA2   A0A023EY32   A0A182RE00   U5EZV2   A0A182TWZ4   A0A182JHC4   A0A182G6U8   A0A182N9V5   A0A182KZF9   A0A182W3K3   A0A182Q7B4   B0WNI2  

Pubmed

19121390    28756777    26354079    22118469    25401762    21282665    + More
24508170    30249741    20798317    21347285    21719571    29403074    25315136    26108605    24495485    28004739    25348373    17994087    28648823    20075255    15632085    27129103    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26334808    18057021    20566863    23537049    24438588    17550304    24945155    26483478    20966253   

EMBL

BABH01036448    BABH01036449    BABH01036450    BABH01036451    BABH01036452    BABH01036453    + More
ODYU01011816    SOQ57777.1    RSAL01003036    RVE40358.1    KZ150505    PZC70652.1    GDQN01009352    JAT81702.1    KQ460501    KPJ14181.1    AGBW02013604    OWR43184.1    GDHF01004520    JAI47794.1    AJWK01004153    GECU01021898    JAS85808.1    GBHO01034641    GBHO01034638    GBHO01034637    GBHO01034636    GBHO01024284    GBHO01024283    JAG08963.1    JAG08966.1    JAG08967.1    JAG08968.1    JAG19320.1    JAG19321.1    NEVH01006600    PNF37396.1    GFDF01008245    JAV05839.1    KQ982944    KYQ49022.1    LBMM01000293    KMR01498.1    KQ978081    KYM97136.1    GL768124    EFZ12014.1    KK107144    QOIP01000003    EZA57521.1    RLU25286.1    PNF37399.1    KQ434879    KZC09946.1    GL453897    EFN75308.1    KQ414591    KOC70296.1    KA644585    AFP59214.1    KQ976691    KYM77902.1    GBYB01006112    JAG75879.1    KZ288189    PBC34697.1    KQ981965    KYN31825.1    ADTU01023754    ADTU01023755    KQ979608    KYN20484.1    GL888243    EGI64081.1    KQ797310    OAD46973.1    GEBQ01022869    JAT17108.1    PYGN01001265    PSN36150.1    GECZ01014332    JAS55437.1    GBBK01004358    JAC20124.1    PNF37397.1    GDHF01032224    JAI20090.1    CCAG010018023    JXJN01012125    JRES01000853    KNC27730.1    GAMC01006971    JAB99584.1    GEZM01068343    GEZM01068342    GEZM01068339    GEZM01068338    GEZM01068337    GEZM01068336    GEZM01068335    GEZM01068334    GEZM01068333    GEZM01068331    JAV66993.1    GAKP01009470    JAC49482.1    GBYB01006113    JAG75880.1    CH479209    EDW32715.1    CM000366    EDX17155.1    NNAY01000067    OXU31344.1    CH480819    EDW53051.1    CH379064    EDY72512.1    OUUW01000025    SPP89634.1    GDKW01000066    JAI56529.1    GBHO01024282    GBHO01009612    GBRD01010208    JAG19322.1    JAG33992.1    JAG55616.1    AF181653    AE014298    AAD55438.1    AAF46056.1    GBHO01034640    GBHO01034633    JAG08964.1    JAG08971.1    GL442691    EFN63155.1    GECU01015996    JAS91710.1    SPP89633.1    GBGD01000500    JAC88389.1    CH940653    EDW62281.1    KRF80535.1    KRF80536.1    PNF37398.1    GALX01006051    JAB62415.1    CH902622    EDV34530.1    GEDC01028933    JAS08365.1    CH933812    EDW05839.1    CH916370    EDW00086.1    GEDC01001138    JAS36160.1    UFQT01001009    SSX28460.1    SSX28461.1    CP012528    ALC49889.1    CH963851    EDW75053.2    DS235045    EEB10931.1    APGK01052763    KB741216    ENN72454.1    CH954180    EDV45915.1    GEZM01068332    JAV67002.1    GEZM01068341    JAV66985.1    ATLV01026919    KE525420    KFB53645.1    CM000162    KRK05952.1    KRK05953.1    EDX01096.1    KRK05954.1    KB632404    ERL95038.1    GAPW01000159    JAC13439.1    GANO01000085    JAB59786.1    JXUM01148920    JXUM01148921    JXUM01148922    JXUM01148923    KQ570665    KXJ68320.1    AXCN02001201    DS232010    EDS31636.1   

Proteomes

UP000005204    UP000283053    UP000053240    UP000007151    UP000092461    UP000235965    + More
UP000075809    UP000036403    UP000078542    UP000053097    UP000279307    UP000076502    UP000008237    UP000053825    UP000078540    UP000005203    UP000242457    UP000078541    UP000005205    UP000078492    UP000007755    UP000245037    UP000078200    UP000095300    UP000092445    UP000092444    UP000092460    UP000095301    UP000092443    UP000091820    UP000037069    UP000008744    UP000000304    UP000215335    UP000001292    UP000002358    UP000001819    UP000268350    UP000000803    UP000000311    UP000008792    UP000007801    UP000192221    UP000009192    UP000001070    UP000092553    UP000007798    UP000009046    UP000019118    UP000008711    UP000079169    UP000030765    UP000002282    UP000030742    UP000075900    UP000075902    UP000075880    UP000069940    UP000249989    UP000075884    UP000075882    UP000075920    UP000075886    UP000002320   

PRIDE

H9JJC4    Q9V3Y5   

Pfam

PF00076   RRM_1        + More
PF01480   PWI
PF00160   Pro_isomerase

Interpro

IPR035979   RBD_domain_sf        + More
IPR036483   PWI_dom_sf       
IPR002483   PWI_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034268   RBM25_RRM       
IPR020892   Cyclophilin-type_PPIase_CS       
IPR029000   Cyclophilin-like_dom_sf       
IPR002130   Cyclophilin-type_PPIase_dom       

SUPFAM

SSF54928   SSF54928        + More
SSF101233   SSF101233       
SSF50891   SSF50891       

Gene 3D

3.30.70.330     2.40.100.10    

CDD

cd12446  RRM_RBM25

ProteinModelPortal

H9JJC4   A0A2H1WXP0   A0A3S2TAK1   A0A2W1B0J3   A0A1E1W423   A0A0N0PCP6   + More
A0A212ENX9   A0A0K8W9T8   A0A1B0CAP9   A0A1B6IFW1   A0A0A9XI46   A0A2J7R980   A0A1L8DHA8   A0A151WMA5   A0A0J7L828   A0A195CAC2   E9J569   A0A026WPD8   A0A2J7R984   A0A154PDG6   E2C9R8   A0A0L7RHS2   T1P8W8   A0A195B0T1   A0A0C9QZH4   A0A088AGZ0   A0A2A3ESM0   A0A195EU96   A0A158NR25   A0A195E6L0   F4WPA0   A0A310SAB0   A0A1B6L094   A0A2P8XVW8   A0A1B6FZ11   A0A023FGJ6   A0A2J7R986   A0A0K8U173   A0A1A9USU6   A0A1I8P2M5   A0A1A9ZQG6   A0A1B0FFE4   A0A1B0BCU4   A0A1I8MAX5   A0A1A9YJ90   A0A1A9W900   A0A0L0C622   W8C943   A0A1Y1L015   A0A034W599   A0A0C9PX77   B4H4G4   B4R506   A0A232FKT1   B4I0M0   K7IQ34   B5DLW5   A0A3B0K674   A0A0P4VP07   A0A0A9XF17   Q9V3Y5   A0A0A9WNG6   E2ATS2   A0A1B6IXZ0   A0A3B0K8G8   A0A069DZK1   B4M805   A0A2J7R987   V5FXN4   B3MRX5   A0A1W4VTH4   A0A1B6C558   B4L643   B4JKI3   A0A1B6EE52   A0A336MEU6   A0A336MGC6   A0A0M3QZS5   B4MSG4   E0VC25   N6SXF3   B3NV67   A0A1Y1L023   A0A1Y1L4U4   A0A3Q0IXJ1   A0A084WTV1   A0A0R1E968   B4PZC9   U4URA2   A0A023EY32   A0A182RE00   U5EZV2   A0A182TWZ4   A0A182JHC4   A0A182G6U8   A0A182N9V5   A0A182KZF9   A0A182W3K3   A0A182Q7B4   B0WNI2  

PDB

3V53     E-value=1.73037e-39,     Score=402

KEGG

101737821    K12822 RNA-binding protein 25 | (RefSeq) RNA-binding protein 25

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0006397   GO:0003723   GO:0003676   GO:0016021   GO:0006457   GO:0003755   GO:0071011   GO:0000381   GO:0000398   GO:0005634   GO:0003729   GO:0017038   GO:0006605   GO:0006886   GO:0005515   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000780000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.63839

inside

1  -  142

 

 

Pi

173.64797

Theta

72.477996

Tajima's D

1.777356

CLR

0.000881

CSRT

0.842157892105395

Interpretation

Uncertain