Silkworm Genome Informatics Database

Gene

KWMTBOMO14703 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009625

Annotation

PREDICTED:_RNA-binding_protein_25_[Bombyx_mori]

Location

Bomo_Chr24(+):12988844-12994844 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.513

CDS

ATGGTCGGTGCATATGGTACAACAAACACTGGAGGTCGTGGAGCATTATTGCCCGCACCGGGAGCTCCACAGGCGGGGAAAGCTGTCATTGCCAGAGGTCCAACTCGTAACACAAATGGTGCTAAAGATGTTGAAGGACCCCCTGTCACTGTGTTTATTGGAAATTTATCATCTAGAGCCCCTGACACAATGATACGTTCAATGCTCAATGCGTGCGGGACTGTACTCACATGGAAGAGAGTCTCCACTTTTGGGTTCTGTGAATTTGGAGGTCCGGAAGCTGCTCTCCGATGTGTTCGACTTCTCAATGATAGGGAGCTGGGAGACAAGCGCTTGTTGGCTCGTACTGATGGCAAGATGCAGGCTCTAGTTGATTCTTACAAGACGGAGCAGCGGTCCCGGCTGGAGGAGGGCGCGGGGGGCGGCGCGGCGGGCGCGGGGGGCGGGTACCTGGACGCGCGGCAGCGGGCGCTGGACGAGGCGGCGGAGGCGCGCCTGCAGCAGATCGCGGTGGAGTACCAGGACGACATCAACAACTATGACATCATACAGAAAGAGGAGGCCATCTCTAAGACGGCGCGCGTTCTGGAGGAGGCAGACATCTCGGAGGAGAAACGTGACGTCATCCACCGCGAGATTGGCAAGTTCCGCGAGAGCATGAAGGAGGAGGCCGACGTGATTGGCAGAAGGAAAAAAGATCCCAAGGACGAAAAGGACAAGGAAAAAGACAAAGACAGAGAAAGAGAGAGGGAGAAGGATCGCGATCGTGAGCGCGACAAGGACAGAGATAGAGAACGAGACAGAGACAGGGAGAAGGATCGCCGCAGGAGAAGCGCCTCCAGGAGTAAGGACCGGCGCGAAGACCGCGACAAGGACAGGGAACGAGACGAGCGAGAGAGGGATAGAGAGCGGGAGAGAGAACGGGAAAGAGAGCGAGAAAGGTAA

Protein

MVGAYGTTNTGGRGALLPAPGAPQAGKAVIARGPTRNTNGAKDVEGPPVTVFIGNLSSRAPDTMIRSMLNACGTVLTWKRVSTFGFCEFGGPEAALRCVRLLNDRELGDKRLLARTDGKMQALVDSYKTEQRSRLEEGAGGGAAGAGGGYLDARQRALDEAAEARLQQIAVEYQDDINNYDIIQKEEAISKTARVLEEADISEEKRDVIHREIGKFRESMKEEADVIGRRKKDPKDEKDKEKDKDREREREKDRDRERDKDRDRERDRDREKDRRRRSASRSKDRREDRDKDRERDERERDRERERERERERER

Uniprot

H9JJC4 A0A212ENX9

Pubmed

19121390 22118469

EMBL

BABH01036448 BABH01036449 BABH01036450 BABH01036451 BABH01036452 BABH01036453 + More
AGBW02013604 OWR43184.1

Proteomes

UP000005204 UP000007151

PRIDE

H9JJC4

Pfam

PF00076 RRM_1 + More
PF01480 PWI

Interpro

IPR035979   RBD_domain_sf        + More
IPR036483   PWI_dom_sf
IPR002483   PWI_dom
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034268   RBM25_RRM

SUPFAM

SSF54928 SSF54928 + More
SSF101233 SSF101233

Gene 3D

3.30.70.330

CDD

cd12446 RRM_RBM25

ProteinModelPortal

H9JJC4 A0A212ENX9

PDB

1P1T E-value=0.0182234, Score=88

KEGG

101737821 K12822 RNA-binding protein 25 | (RefSeq) RNA-binding protein 25

GO

GO:0006397 GO:0003723 GO:0000166 GO:0003676 GO:0017038 GO:0006605 GO:0006886 GO:0005515 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

314

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00756999999999999

Exp number, first 60 AAs:

0.0026

Total prob of N-in:

0.06825

outside

1 - 314

Pi

276.864069

Theta

183.297891

Tajima's D

0.801828

CLR

310.6269

CSRT

0.610919454027299

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics