Silkworm Genome Informatics Database

Gene

KWMTBOMO14702 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009624

Annotation

PREDICTED:_syntaxin-17_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(+):12969394-12982552 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.455 Mitochondrial Reliability : 1.665 Nuclear Reliability : 1.179

CDS

ATGGAAGAAGAAGACAAGCTGCCTTTAAAAAGAGTAGAATTTTCATTAACGAAGTTTAATGAAGTTGCAATTCCACATCATCTGGATTTACTACGGCAGCACAAGGCTAATATTATCAAATATGAGGAGGGCGGCGAGTACGCGCGAGTCCGAAGCGAGCAGACGCACGCGCGGCGGGTGGCGTCGCAGCTGCGCGCGCTGCTCGGCGAGCTGGAGGCGCTGCGGCGACGCGTGCGGCTCGACGACCTGCCGCGCTTCGACGCGCTCACCCGGAGCTCCCGGGACAACACGCTCAAAGCGATCATGGACTACCTGGATACGTCTCCGTTGTCGGCGAACCGGCGCCCGGTGGAGGCGGTGGAGGTGGCGGCGGGCAGCACCGTGTCCTCGGAGTCGGTGGGCGTGCTGTCCCACCACGACGAGGTGCGCGAGCTGGAGCTCTCCTCCATACAGTTGCAGGTCAACGACCAGGAGAGCTCGTTGCGGGAGCGCGAGGCGGCGCTGCGCGGCTGGTGCGAGCTGCAGGGCGAGGTGCGCGCGCTGCACGAGGCCTGGCAGCACGTGCAGGCCGCCGCGCTGCACCACCGACACCAGGTGTCGGCGGCGGCGGCGCACGTGGAGGCGGCGGCGGGTGAAGTGCGGGCCGCGCGTCAACACCTCTCCGCGGCCGAGAGAATAAAGGCAGGCGCGTTGGGCGCCAGCGGAGCGATAGCGGGAGCCCTGGTGGGGGGACCGGTGGGGGTCGTGGTGGGGATCAAGGCGGGAGCCCTCGCTGCGCTGGCTGGTTCTGCGCTCGGATACCTGGGGGGGCGGGTGCTCGCCGCTCGACAAAAACAGCCCCAGAAACAAGAATGA

Protein

MEEEDKLPLKRVEFSLTKFNEVAIPHHLDLLRQHKANIIKYEEGGEYARVRSEQTHARRVASQLRALLGELEALRRRVRLDDLPRFDALTRSSRDNTLKAIMDYLDTSPLSANRRPVEAVEVAAGSTVSSESVGVLSHHDEVRELELSSIQLQVNDQESSLREREAALRGWCELQGEVRALHEAWQHVQAAALHHRHQVSAAAAHVEAAAGEVRAARQHLSAAERIKAGALGASGAIAGALVGGPVGVVVGIKAGALAALAGSALGYLGGRVLAARQKQPQKQE

Uniprot

A0A212ENV0 A0A3S2M8I7 A0A2A4IX41 A0A2H1WZW2 A0A2A4IY10 A0A2A4IYQ0 + More
A0A2W1BCK9 A0A0N0PCY9 A0A0J7KD69 A0A026WXS3 A0A1A9V489 A0A0A1X222 D3TQK5 A0A1A9YEH7 A0A1B0B7V8 A0A1B0FB70 A0A0A1XSK2 A0A1A9ZS20 A0A182MBY4

Pubmed

22118469 28756777 26354079 24508170 30249741 25830018 + More
20353571

EMBL

AGBW02013604 OWR43185.1 RSAL01000008 RVE53910.1 NWSH01005309 PCG64301.1 + More
ODYU01011913 SOQ57924.1 PCG64298.1 PCG64300.1 KZ150505 PZC70650.1 KQ460501 KPJ14182.1 LBMM01009449 KMQ88129.1 KK107077 QOIP01000001 EZA60598.1 RLU27148.1 GBXI01009120 JAD05172.1 EZ423707 ADD19983.1 JXJN01009729 CCAG010009344 GBXI01000023 JAD14269.1 AXCM01009087

Proteomes

UP000007151 UP000283053 UP000218220 UP000053240 UP000036403 UP000053097 + More
UP000279307 UP000078200 UP000092443 UP000092460 UP000092444 UP000092445 UP000075883

Pfam

PF05739   SNARE        + More
PF07645   EGF_CA
PF07546   EMI

Interpro

IPR028676   STX17        + More
IPR010989   SNARE
IPR000727   T_SNARE_dom
IPR000152   EGF-type_Asp/Asn_hydroxyl_site
IPR011489   EMI_domain
IPR018097   EGF_Ca-bd_CS
IPR013032   EGF-like_CS
IPR000742   EGF-like_dom
IPR009030   Growth_fac_rcpt_cys_sf
IPR001881   EGF-like_Ca-bd_dom

SUPFAM

SSF47661 SSF47661 + More
SSF57184 SSF57184

ProteinModelPortal

A0A212ENV0 A0A3S2M8I7 A0A2A4IX41 A0A2H1WZW2 A0A2A4IY10 A0A2A4IYQ0 + More
A0A2W1BCK9 A0A0N0PCY9 A0A0J7KD69 A0A026WXS3 A0A1A9V489 A0A0A1X222 D3TQK5 A0A1A9YEH7 A0A1B0B7V8 A0A1B0FB70 A0A0A1XSK2 A0A1A9ZS20 A0A182MBY4

KEGG

101747035 K08491 syntaxin 17 | (RefSeq) syntaxin-17

PATHWAY

04130 SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)
04140 Autophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0097111 GO:0006888 GO:0097352 GO:0000149 GO:0005737 GO:0016021 GO:0016020 GO:0005509

PANTHER

PTHR19957:SF139

Length:

284

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

34.90788

Exp number, first 60 AAs:

0

Total prob of N-in:

0.62876

inside

1 - 229

TMhelix

230 - 252

outside

253 - 255

TMhelix

256 - 275

inside

276 - 284

Pi

262.244198

Theta

185.338613

Tajima's D

1.326882

CLR

0.682859

CSRT

0.740712964351782

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics