Gene

KWMTBOMO14693

Pre Gene Modal

BGIBMGA009620

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_RFWD2-like_[Amyelois_transitella]

Location

Bomo_Chr24(+):12892084-12898918      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.623

CDS

ATGTCGGGTGCCGCAGCCAGCAGTGCAGGCTCTGGCACGGCCACCACTCTCGGAGGACTTGGCGGCTCACTTGAGGATAAGGACTGTGAGCTCCTGTGCCCGGTGTGCTTCGAGCTGATCGACGAGGCCTATGTGACGCGCTGCGGCCACTCGTTCTGCTACGCGTGCATCAGCCGCGCGCTCGACCTGCACCGGCGCTGTCCCAAGTGCGGAGCGCCCCTGCTCACCAGAGAACACATCTTCCCCAACTTCCTGCTCAATGAACTCGTGACGAAGCGCCGGCTCCGGTCGAGGGCGTCGTCCCGGTCGGGCCCGGCCGGCGAGGGAGCCCGGCTGCGCTCGCTGCTCGCCGCGGAGTCGCGACACCTCGACCTCACCGAGGTGGATTCCATGTTGGAACTGCTCAACAGACGGAAGAGACTGCTGGAGGCGGAGTGCGCGGCGGCGCAGCACCGGCTACTGTACGAGTTCCTGGCGCACCTGCACCGCCACCGCACCCACCAGCTGCAGCAGCTCGCCAGGGAGGCCGCCCTCGTGCACAAGGACATGGAGTACGTCGCCGGAGTGCTGAAGGAACTCCGCACGGGTGCAGTGGGGATAGCGCGCGGGGCCTCGCCCCCCGGCGGCGCGGACCCCCGCCCAGACGCCGTCACTGCGCTCAGGAAAGAGATCGCCGATATAGCCGGGAACCTCGCAGACACGGCCAGCAATGTTGACGGTATTCATTGTTACAATGGTAGTTTTCCAATTACAGCACTATAG

Protein

MSGAAASSAGSGTATTLGGLGGSLEDKDCELLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPLLTREHIFPNFLLNELVTKRRLRSRASSRSGPAGEGARLRSLLAAESRHLDLTEVDSMLELLNRRKRLLEAECAAAQHRLLYEFLAHLHRHRTHQLQQLAREAALVHKDMEYVAGVLKELRTGAVGIARGASPPGGADPRPDAVTALRKEIADIAGNLADTASNVDGIHCYNGSFPITAL

Uniprot

H9JJB9   A0A194QU24   A0A194Q9M7   A0A212FBW2   U5EVR0   W5J2X7   + More
A0A2P8YKN3   K7J750   A0A1B6CBX0   A0A1B0D6S5   A0A182FSV7   A0A182LAH1   A0A3Q0J4I9   A0A182W135   A0A084W778   F5HJD2   A0A182RRT5   A0A1I8JVR1   A0A182M5P2   A0A182JFK9   A0A182SVX4   A0A1B6FDX3   A0A182I8L7   A0A0M8ZZF6   A0A0P6K128   A0A182K6A7   A0A154P1Z2   A0A182H264   A0A232FG18   T1JKE0   A0A240PKY3   A0A310SJF4   B0W6N7   A0A0L7RJM9   V9IMB5   A0A067R1R4   A0A1Q3FA58   A0A182XX61   A0A0A9WSN1   A0A2A3EDH8   A0A146LYB2   E2B9F2   A0A088ADG8   A0A0C9RET2   A0A2J7PN84   E0VY83   D6WAL1   A0A1Y1MGZ3   A0A1E1XD65   A0A293L690   A0A1Z5LHR7   N6U1H1   A0A091S798   A0A0A6YVV7   A0A093KLA4   A0A3P4RZD5   A0A091QVD0   A0A1V4JXH3   A0A2D4IJS0   J3S5F7   A0A091IPM1   A0A087QVH0   A0A091G2N2  

Pubmed

19121390    26354079    22118469    20920257    23761445    29403074    + More
20075255    20966253    24438588    12364791    14747013    17210077    26999592    26483478    28648823    24845553    25244985    25401762    26823975    20798317    20566863    18362917    19820115    28004739    28503490    28528879    23537049    19468303    23025625   

EMBL

BABH01036433    BABH01036434    BABH01036435    KQ461108    KPJ08972.1    KQ459249    + More
KPJ02217.1    AGBW02009261    OWR51229.1    GANO01001754    JAB58117.1    ADMH02002125    ETN58667.1    PYGN01000528    PSN44774.1    AAZX01008222    GEDC01026357    JAS10941.1    AJVK01026234    ATLV01021173    KE525314    KFB46072.1    AAAB01008844    EGK96393.1    AXCM01001964    GECZ01021343    JAS48426.1    APCN01003086    KQ435812    KOX72753.1    GDUN01000261    JAN95658.1    KQ434803    KZC05946.1    JXUM01104760    KQ564912    KXJ71580.1    NNAY01000297    OXU29379.1    AFFK01019697    KQ760549    OAD59875.1    DS231849    EDS36868.1    KQ414581    KOC71003.1    JR053449    AEY61932.1    KK852811    KDR15937.1    GFDL01010628    JAV24417.1    GBHO01033174    GBHO01033173    GDHC01008730    JAG10430.1    JAG10431.1    JAQ09899.1    KZ288271    PBC29833.1    GDHC01007003    JAQ11626.1    GL446502    EFN87676.1    GBYB01005496    JAG75263.1    NEVH01023957    PNF17804.1    DS235845    EEB18339.1    KQ971312    EEZ97982.1    GEZM01031084    GEZM01031083    JAV85072.1    GFAC01001996    JAT97192.1    GFWV01002787    MAA27517.1    GFJQ02000055    JAW06915.1    APGK01053202    KB741222    KB631665    ENN72402.1    ERL85146.1    KK944678    KFQ53406.1    AC084287    AC113597    KK556540    KFV98465.1    CYRY02045046    VCX40307.1    KK682873    KFQ13344.1    LSYS01005497    OPJ76823.1    IACK01101873    LAA84354.1    JU176434    AFJ51957.1    KL218035    KFP01611.1    KL225950    KFM05224.1    KL447642    KFO75606.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000000673    UP000245037    + More
UP000002358    UP000092462    UP000069272    UP000075882    UP000079169    UP000075920    UP000030765    UP000007062    UP000075900    UP000076407    UP000075883    UP000075880    UP000075901    UP000075840    UP000053105    UP000075881    UP000076502    UP000069940    UP000249989    UP000215335    UP000075885    UP000002320    UP000053825    UP000027135    UP000076408    UP000242457    UP000008237    UP000005203    UP000235965    UP000009046    UP000007266    UP000019118    UP000030742    UP000000589    UP000190648    UP000054308    UP000053286    UP000053760   

PRIDE

H9JJB9   

Pfam

PF00400   WD40        + More
PF00883   Peptidase_M17
PF02789   Peptidase_M17_N

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR001841   Znf_RING       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR017907   Znf_RING_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR003613   Ubox_domain       
IPR000819   Peptidase_M17_C       
IPR023042   Peptidase_M17_leu_NH2_pept       
IPR011356   Leucine_aapep/pepB       
IPR008283   Peptidase_M17_N       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10     3.30.40.10    

CDD

cd00433  Peptidase_M17

ProteinModelPortal

H9JJB9   A0A194QU24   A0A194Q9M7   A0A212FBW2   U5EVR0   W5J2X7   + More
A0A2P8YKN3   K7J750   A0A1B6CBX0   A0A1B0D6S5   A0A182FSV7   A0A182LAH1   A0A3Q0J4I9   A0A182W135   A0A084W778   F5HJD2   A0A182RRT5   A0A1I8JVR1   A0A182M5P2   A0A182JFK9   A0A182SVX4   A0A1B6FDX3   A0A182I8L7   A0A0M8ZZF6   A0A0P6K128   A0A182K6A7   A0A154P1Z2   A0A182H264   A0A232FG18   T1JKE0   A0A240PKY3   A0A310SJF4   B0W6N7   A0A0L7RJM9   V9IMB5   A0A067R1R4   A0A1Q3FA58   A0A182XX61   A0A0A9WSN1   A0A2A3EDH8   A0A146LYB2   E2B9F2   A0A088ADG8   A0A0C9RET2   A0A2J7PN84   E0VY83   D6WAL1   A0A1Y1MGZ3   A0A1E1XD65   A0A293L690   A0A1Z5LHR7   N6U1H1   A0A091S798   A0A0A6YVV7   A0A093KLA4   A0A3P4RZD5   A0A091QVD0   A0A1V4JXH3   A0A2D4IJS0   J3S5F7   A0A091IPM1   A0A087QVH0   A0A091G2N2  

PDB

4R8P     E-value=4.0299e-05,     Score=110

KEGG

101746476    K10143 E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RFWD2

GO

GO:0016874   GO:0004842   GO:0004177   GO:0005737   GO:0008235   GO:0030145   GO:0032440   GO:0005515   GO:0008270   GO:0042803   GO:0051087   GO:0005634   GO:0006303   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01833

Exp number, first 60 AAs:

0.01815

Total prob of N-in:

0.02491

outside

1  -  253

 

 

Pi

283.179072

Theta

193.421562

Tajima's D

1.323911

CLR

0

CSRT

0.746162691865407

Interpretation

Uncertain