Silkworm Genome Informatics Database

Gene

KWMTBOMO14689

Pre Gene Modal

BGIBMGA009577

Annotation

PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(-):12759924-12764616 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.437

CDS

ATGTTGGGGTTGTTTTCCAGCGGTGCTCTGGGCGGCGTGGAAGTCCTAGATGGTGGATTGGTAGGCGGTGAACTTGGTCACGTGTTGAGCGCGCAGGCCGCGGCACACGCAGCAGCTACTGCCCATCATCAGCAACAACAAATAGCTGCACAACAGATTAGCCGTTCATCACCAGTTCAACCCACAAATGGCACCACACCAGCTACGGGCACCACTTCACCATCGCCAAGCAAGCTCTTCGTGGGGGGCCTCAGCTGGCAGACGAGCTCGGAAAAGCTACGAGAGTACTTCACAATGTTTGGAACTGTCACTGATGTTTTGATAATGAAAGATCCCGTTACTCAGAGGTCGCGCGGGTTCGGCTTCATCACGTTTCAGGACGCCTCATCCGTGGACAAGGTCCTAGCCGTGTCCGTGCACACGCTCGACGGGAAACGGATCGACCCCAAACACGCCACCCCCAAGTCCGCTCCGCGACCTACCAAGACCAAGAAGATATTCGTCGGCGGAGTCGGGCAGGACACCTCCGCCGAGGAGGTCAGGGCGTACTTCTCGCAGTTCGGCGTGGTCGAGGACGCGGTCATGCTGATGGACCAGCAGACGAAGCGGCACCGCGGCTTTGGCTTTGTGACGTTCCACTCGGAGGAGGCGGTGGAGCGCGTGTGCGACATTCACTTCCACACGATCAAGAACAAGAAGGTGGAGTGCAAGCGCGCGCAGCCCAAGGAAGCGGTCGCGGCGGCCCCGCTGGCGCTCGGAAAGCGGCTGGTGGTGCGCGGGGGGCGTGGCCTGCTGTACGGGGGGCTGCCCTCGTACCGGTACGCGCCCTACGCGCTGCCCTCCGCCCCCGCGCTGGTGCCGCCTGCCCCCGCGCCCCCCGCACCCCTGCCGCAGTTCGGCGCCGCCTATTCGCTGGCCGGGGTGGACATGTCCTCGTTCCAGGGCGTGGACTGGAGCGCCATGTACCACCTGCCGATGTACATCTAA

Protein

MLGLFSSGALGGVEVLDGGLVGGELGHVLSAQAAAHAAATAHHQQQQIAAQQISRSSPVQPTNGTTPATGTTSPSPSKLFVGGLSWQTSSEKLREYFTMFGTVTDVLIMKDPVTQRSRGFGFITFQDASSVDKVLAVSVHTLDGKRIDPKHATPKSAPRPTKTKKIFVGGVGQDTSAEEVRAYFSQFGVVEDAVMLMDQQTKRHRGFGFVTFHSEEAVERVCDIHFHTIKNKKVECKRAQPKEAVAAAPLALGKRLVVRGGRGLLYGGLPSYRYAPYALPSAPALVPPAPAPPAPLPQFGAAYSLAGVDMSSFQGVDWSAMYHLPMYI

Uniprot

A0A2A4JM94 H9JJ76

Pubmed

19121390

EMBL

NWSH01001085 PCG72704.1 BABH01036421

Proteomes

UP000218220 UP000005204

PRIDE

H9JJ76

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR037366   BOULE/DAZ
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

A0A2A4JM94 H9JJ76

PDB

2KM8 E-value=3.00642e-45, Score=457

KEGG

101736977 K14411 RNA-binding protein Musashi | (RefSeq) RNA-binding protein Musashi homolog Rbp6-like

PATHWAY

03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0000166 GO:0003676 GO:0042803 GO:0051087 GO:0005634 GO:0006303 GO:0003824 GO:0008152 GO:0016491 GO:0015930

PANTHER

PTHR11176

Length:

328

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01433

Exp number, first 60 AAs:

0.00637

Total prob of N-in:

0.00138

outside

1 - 328

Pi

16.617065

Theta

17.50939

Tajima's D

-1.866156

CLR

207.285012

CSRT

0.024098795060247

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics