Gene

KWMTBOMO14687  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009578

Annotation

PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Papilio_polytes]

Location

Bomo_Chr24(-):12693820-12703896      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.22 Mitochondrial   Reliability : 1.326 Nuclear   Reliability : 1.636

CDS

ATGTCCAAACGTCGTATTGAAGTAATTGATCCGTTTATCAAAAAGAAAAGGGAAGAGAAGGCTGCGGCTGCTGCGAAATCTGGAATCACCGGTGAACCTTCAGAAGCAACTACCAACACGACTACCACCATGGCTACCAATACACCTGGACTAAATAAATATACCGGTCTTCCGCATTCACAGCGTTACCATGAGCTATTACGAAAACGTTTAGGACTCCCTGTCTGGGAATACAAAAATGATTTCATGAGATTACTCAACACTCATCAATGTATAGTGCTCGTAGGAGAAACAGGGTCAGGGAAGACTACCCAGATCCCCCAGTGGTCTGTAGAATTTGCTGCAGTAAGTGGCCTAGGCAAGGCTAAAGGAGTGGCCTGTACTCAACCAAGACGAGTGGCTGCTATGTCTGTTGCTCAGAGGGTAGCCGAAGAAATGGATGTGGCTTTGGGTCAGGAAGTTGGTTACAGCATTCGTTTTGAAGACTGTTCAGGGCCACAAACACTTCTAAAATACATGACAGACGGTATGTTGCTAAGAGAGGCTATGTCTGACCCAATGCTAGAACAATATAGAGTTATACTCCTCGATGAAGCCCACGAAAGGACACTTGCAACAGATATCCTGATGGGTGTTCTCAAAGAAGTCATAAAACAGAGGTCCGATTTGAAACTCGTTATTATGTCAGCCACATTAGATGCTGGAAAGTTCCAGCATTATTTTGACAATGCTCCATTAATGAACATTCCTGGTCGGACTCATCCGGTAGAAATATTTTACACTCCACAACCTGAACGAGATTACCTAGAAGCTGCGATAAGGACTGTAATACAAATCCATATGTGTGAAGAGATCTCTGGTGATATACTACTATTTTTAACTGGACAAGAGGAGATTGAGGATGCTTGTAAGAGAATTAAAAGAGAAATAGACAATCTGGGAACTGATGCAGGAGAGCTAAAGTGCATACCGTTATATTCAACATTGCCGCCAAATTTACAGCAACGGATCTTTGAGCCGGCACCTCCAAATCGACCAAACGGAGCCATCGGCAGGAAGGTGGTAGTGTCCACAAACATCGCTGAAACATCTCTGACTATTGATGGTGTTGTTTTTGTCATTGACCCAGGTTTTGCGAAACAAAAAGTTTATAATCCCCGTATAAGGGTGGAATCGTTATTGGTTTCTCCGATAAGTAAAGCATCAGCCCAACAGAGAGCGGGGAGGGCCGGCAGAACTAGACCTGGGAAGTGCTTCCGGTTATATACTGAGAAAGCATACAAGGATGAAATGCAGGACAATACTTATCCTGAGATTTTGAGATCAAACTTAGGATCTGTAGTTTTGCAGTTGAAGAAGTTGGGCATCGATGACCTGGTGCATTTCGATTTCATGGATCCACCGGCTCCGGAGACACTCATGCGGGCGCTCGAGCTGCTCAACTATCTGGCTGCGCTGGATGATGACGGTAACCTCACTGACCTGGGTGCTGTGATGGCGGAGTTCCCCCTCGACCCACAGCTGGCCAAGATGCTGATAGCCAGCTGCAATCACAACTGTTCCAACGAGATCCTCTCCATCACTGCCATGCTGTCAGTGCCGCAGTGCTTCGTGAGACCAAACGAGGCGCGGAAGGCTGCCGACGAGGCTAAAATGCGTTTTGCCCACATCGACGGTGACCATCTTACGCTACTGAACGTATACCACGCCTTCAAACAGAACATGGAGGATCCCCACTGGTGCTATGATAACTTCATTAATTACAGATCGCTAAAGTCGGGCGACAACGTCAGACAGCAACTTAGCAGGATTATGGACAGATTTAATTTGAAAAGAACAAGCACAGAATTCACAAGCAAAGATTATTACATCAACATACGGAAGGCACTTGTAAATGGATTTTTCATGCAGGTGGCGCACCTCGAGAGGACGGGCAGCTACCTGACGGTGAAGGACAACCAGGTGGTACAGCTGCACCCTTCCACGTGCCTGGACCACAAGCCCGACTGGGTCATATACAACGAGTTCGTGCTCACCACCAAGAACTACATTAGGACTGTCACTGATATCAAGCCGGAATGGCTGCTGAAGATCGCTCCCCAGTACTACGAGCTGGGCAACTTCCCGCAGTGCGAGGCGCGGAGACAGCTGGAGCTGCTGCAGGCCAGACTCGACTCCAAGCACTACCAGGAGGGCTTCTAG

Protein

MSKRRIEVIDPFIKKKREEKAAAAAKSGITGEPSEATTNTTTTMATNTPGLNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQHYFDNAPLMNIPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHMCEEISGDILLFLTGQEEIEDACKRIKREIDNLGTDAGELKCIPLYSTLPPNLQQRIFEPAPPNRPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKDEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQCEARRQLELLQARLDSKHYQEGF

Uniprot

H9JJ77   A0A194Q9Y3   S4NP01   A0A212FBX8   A0A0M9A9Y5   D6WA22   + More
A0A1B6BZJ9   A0A088AGJ5   A0A067RNH9   A0A2J7QIQ9   N6UB91   A0A0N7Z9J6   K7IN36   A0A1B6F6H6   A0A0V0G8Z3   A0A023F5S5   A0A0C9RZM8   A0A158ND22   A0A154PFA4   A0A195B8Y2   A0A3L8DK02   A0A224XFJ3   A0A2A3EHY7   F4X0J9   A0A1I8MWF9   T1PAQ4   A0A0L0CT66   A0A0L7QVG8   A0A0A1XIY4   A0A1B0CGH3   A0A1L8DHD6   W8CAQ1   E0VIH1   E9IJS9   A0A1B0B1Z6   A0A026WH48   A0A151IDW4   E2AV08   A0A336LPD2   A0A195DUP8   A0A310S6W8   A0A1B0G6Z8   B4P1N2   A0A151XGJ3   A0A195F8M1   B3NA05   A0A3B0JD34   Q292S7   A0A0R3NL09   A0A034W103   B4GCN9   B4MR77   B4J6N1   A0A0M4E4B2   A0A1W4VE77   Q7K3M5   B4LM98   A0A0J9R727   B4HQT3   A0A182QBB9   E2C6Y1   U5ESQ2   A0A182YB18   A0A182N2A9   A0A2M4A757   A0A2M3Z2W7   A0A182FKL6   B4KNE3   A0A2M4BFR0   W5J7W3   A0A182RW62   B3MI69   A0A182VJV5   A0A182KL26   A0A182SFZ5   A0A1Y1LLP2   A0A182X5N1   A0A182JF92   A0A182TXC5   A0A182HWB7   A0A182NZM9   Q7QHE1   A0A182K266   T1IZ76   A0A232FAK2   J9K4C8   A0A2S2QEF0   Q17CT5   A0A084VHS4   A0A023EVY8   A0A2H8U1A7   A0A1Q3F2P6   B0WL58   A0A182MHD7   A0A023GLS7   A0A023FL45   A0A1E1XHM8   A0A1I8P3Q3   A0A1E1XTY7   A0A131YQK7  

Pubmed

19121390    26354079    23622113    22118469    18362917    19820115    + More
24845553    23537049    27129103    20075255    25474469    21347285    30249741    21719571    25315136    26108605    25830018    24495485    20566863    21282665    24508170    20798317    17994087    17550304    15632085    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    25244985    20920257    23761445    20966253    28004739    12364791    28648823    17510324    24438588    24945155    26483478    28503490    29209593    26830274   

EMBL

BABH01036417    KQ459249    KPJ02229.1    GAIX01012059    JAA80501.1    AGBW02009261    + More
OWR51233.1    KQ435706    KOX80227.1    KQ971312    EEZ98074.1    GEDC01030607    JAS06691.1    KK852563    KDR21284.1    NEVH01013579    PNF28459.1    APGK01030415    KB740771    KB632375    ENN78985.1    ERL93866.1    GDKW01000363    JAI56232.1    GECZ01024078    JAS45691.1    GECL01001924    JAP04200.1    GBBI01002185    JAC16527.1    GBYB01013586    JAG83353.1    ADTU01012186    KQ434892    KZC10529.1    KQ976558    KYM80654.1    QOIP01000007    RLU20503.1    GFTR01007858    JAW08568.1    KZ288235    PBC31413.1    GL888498    EGI59991.1    KA645784    AFP60413.1    JRES01000049    KNC34609.1    KQ414726    KOC62632.1    GBXI01003794    JAD10498.1    AJWK01011108    GFDF01008320    JAV05764.1    GAMC01005541    JAC01015.1    DS235199    EEB13177.1    GL763883    EFZ19125.1    JXJN01007391    KK107213    EZA55278.1    KQ977906    KYM98871.1    GL442974    EFN62726.1    UFQS01000094    UFQT01000094    SSW99275.1    SSX19655.1    KQ980341    KYN16477.1    KQ777390    OAD52096.1    CCAG010003750    CM000157    EDW89168.1    KQ982173    KYQ59418.1    KQ981744    KYN36399.1    CH954177    EDV59701.1    OUUW01000001    SPP73130.1    CM000071    EAL24784.1    KRT01556.1    GAKP01009726    JAC49226.1    CH479181    EDW31487.1    CH963849    EDW74616.1    CH916367    EDW00934.1    CP012524    ALC40841.1    AE013599    AY058484    AAF59269.1    AAL13713.1    AGB93299.1    CH940648    EDW60976.1    CM002911    KMY91952.1    CH480816    EDW46743.1    AXCN02001729    GL453236    EFN76299.1    GANO01003135    JAB56736.1    GGFK01003315    MBW36636.1    GGFM01002047    MBW22798.1    CH933808    EDW09996.1    GGFJ01002517    MBW51658.1    ADMH02001908    ETN60552.1    CH902619    EDV35914.1    GEZM01054093    JAV73851.1    APCN01001484    AAAB01008816    EAA05149.4    AFFK01020413    NNAY01000599    OXU27468.1    ABLF02019760    ABLF02053299    GGMS01006914    MBY76117.1    CH477304    EAT44187.1    ATLV01013224    KE524847    KFB37518.1    JXUM01033610    JXUM01126431    GAPW01000337    KQ567067    KQ560995    JAC13261.1    KXJ69639.1    KXJ80091.1    GFXV01008026    MBW19831.1    GFDL01013277    JAV21768.1    DS231980    EDS30231.1    AXCM01007440    GBBM01000561    JAC34857.1    GBBK01002130    JAC22352.1    GFAC01000485    JAT98703.1    GFAA01001013    JAU02422.1    GEDV01007018    JAP81539.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053105    UP000007266    UP000005203    + More
UP000027135    UP000235965    UP000019118    UP000030742    UP000002358    UP000005205    UP000076502    UP000078540    UP000279307    UP000242457    UP000007755    UP000095301    UP000037069    UP000053825    UP000092461    UP000009046    UP000092460    UP000053097    UP000078542    UP000000311    UP000078492    UP000092444    UP000002282    UP000075809    UP000078541    UP000008711    UP000268350    UP000001819    UP000008744    UP000007798    UP000001070    UP000092553    UP000192221    UP000000803    UP000008792    UP000001292    UP000075886    UP000008237    UP000076408    UP000075884    UP000069272    UP000009192    UP000000673    UP000075900    UP000007801    UP000075903    UP000075882    UP000075901    UP000076407    UP000075880    UP000075902    UP000075840    UP000075885    UP000007062    UP000075881    UP000215335    UP000007819    UP000008820    UP000030765    UP000069940    UP000249989    UP000002320    UP000075883    UP000095300   

PRIDE

H9JJ77    Q7K3M5   

Pfam

PF07717   OB_NTP_bind        + More
PF00271   Helicase_C
PF04408   HA2
PF00270   DEAD

Interpro

IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd       
IPR011709   DUF1605       
IPR007502   Helicase-assoc_dom       
IPR027417   P-loop_NTPase       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR001609   Myosin_head_motor_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR002464   DNA/RNA_helicase_DEAH_CS       

SUPFAM

SSF52540   SSF52540        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

CDD

cd00079  HELICc

ProteinModelPortal

H9JJ77   A0A194Q9Y3   S4NP01   A0A212FBX8   A0A0M9A9Y5   D6WA22   + More
A0A1B6BZJ9   A0A088AGJ5   A0A067RNH9   A0A2J7QIQ9   N6UB91   A0A0N7Z9J6   K7IN36   A0A1B6F6H6   A0A0V0G8Z3   A0A023F5S5   A0A0C9RZM8   A0A158ND22   A0A154PFA4   A0A195B8Y2   A0A3L8DK02   A0A224XFJ3   A0A2A3EHY7   F4X0J9   A0A1I8MWF9   T1PAQ4   A0A0L0CT66   A0A0L7QVG8   A0A0A1XIY4   A0A1B0CGH3   A0A1L8DHD6   W8CAQ1   E0VIH1   E9IJS9   A0A1B0B1Z6   A0A026WH48   A0A151IDW4   E2AV08   A0A336LPD2   A0A195DUP8   A0A310S6W8   A0A1B0G6Z8   B4P1N2   A0A151XGJ3   A0A195F8M1   B3NA05   A0A3B0JD34   Q292S7   A0A0R3NL09   A0A034W103   B4GCN9   B4MR77   B4J6N1   A0A0M4E4B2   A0A1W4VE77   Q7K3M5   B4LM98   A0A0J9R727   B4HQT3   A0A182QBB9   E2C6Y1   U5ESQ2   A0A182YB18   A0A182N2A9   A0A2M4A757   A0A2M3Z2W7   A0A182FKL6   B4KNE3   A0A2M4BFR0   W5J7W3   A0A182RW62   B3MI69   A0A182VJV5   A0A182KL26   A0A182SFZ5   A0A1Y1LLP2   A0A182X5N1   A0A182JF92   A0A182TXC5   A0A182HWB7   A0A182NZM9   Q7QHE1   A0A182K266   T1IZ76   A0A232FAK2   J9K4C8   A0A2S2QEF0   Q17CT5   A0A084VHS4   A0A023EVY8   A0A2H8U1A7   A0A1Q3F2P6   B0WL58   A0A182MHD7   A0A023GLS7   A0A023FL45   A0A1E1XHM8   A0A1I8P3Q3   A0A1E1XTY7   A0A131YQK7  

PDB

6ID1     E-value=0,     Score=2979

KEGG

101746103    K12820 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13] | (RefSeq) puta

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004386   GO:0003676   GO:0034459   GO:0003723   GO:0003774   GO:0016459   GO:0016787   GO:1900745   GO:0004004   GO:0071013   GO:0071011   GO:0016779   GO:0000398   GO:0005681   GO:0003724   GO:0006457   GO:0042803   GO:0051087   GO:0005634   GO:0006303   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

733

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00483999999999999

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00064

outside

1  -  733

 

 

Pi

321.82207

Theta

186.86046

Tajima's D

2.082901

CLR

0.000019

CSRT

0.890705464726764

Interpretation

Uncertain