Gene

KWMTBOMO14684

Pre Gene Modal

BGIBMGA009617

Annotation

putative_sorting_nexin_family_member_30_[Operophtera_brumata]

Location

Bomo_Chr24(+):12655647-12666941      View in EpiBrowser

Full name

Sorting nexin-30      

Location in the cell

Nuclear   Reliability : 3.136

CDS

ATGGCCAGTGAAAGCAGTTCAGCAATGCTGGACATGACAGATGCTGACTCCGACGATATGGACATGCCGACTCTCATGGACGATCAGGAGCCATCACCGCTCATCATGGAGCACGGCTATGACATTGCAATTAAGGTCGATGCCCCCATAAAACAGCTGTCGACCCTCGAGACGTATGTGACGTACCGGGTGCGTTGCGTGTGCGCGCGGTGGCCGACCCCGCCCAGCGTGAGACGACGGTACAATCACTTTAAGGTGCTGCACAAGCGGCTGTCGGCGGCGCACCCCCTCACCGCGGCGCCCCCCGCGCCCCCGCTGCACTCCGCGCGCCAGCAGCTCGACAGATACTCGGCGTCGTTTGTCGCCATAAGGACCTTAGCCCTCAACGCGTTTCTAGATCGCATCGCCAAACATCCGATCCTGACACACAGCGAAGACTTCAGATTGTTTCTGACCACGCCAGATGAGGAAATCGATAAGGTGTTCCGGAGTGAGAATAACGCGTTGAATCTGTGGGGGCTGGGCAGCGCGCTAGCGTACGGTGGGGACGGGCGTCACTCCAACGGAGTCCGAGTAAAAGATCCAGAGTTTTCATCGGCAGTCGACTACCTGAACGCTCTACAAGACAAGCTGGCCACCCTCTGTGATCTGACCACGAAACTATACAGGGGGACCGCCGCCCTCGCCGCCGAGTACTCGAGCATGCAGCGCGTGTGCGACGTGTGGTCGACGCAGTGCGGGGCGCGGTGCGGGGGAACGCAGCGGGGCGTGCGGGGGGTGTCGGCGGGCGCGGGGGCGGCGGGGCAGGCGGCGGGGGGGCGGCCCTCCCCCTCCCACCGCGCCGTGCTGCCCCTGCTGGCCGCCTACGCCGCGGCCCAGGCCGATAAGATAAGGCAGCGGGACAGGATGCACGCGGAATACGTGTCTGGGACGGACACCAGCGACGACCTGCAGAACAGAGTCGAGGAGGCGACCGAGGCTCTGCGCAGTGAGCTCTGGTCGTGGACCGCCAAGACCCATCAGGACATCAAGGGCGTCCTGGCGTACATAGCCACCAGACAGGTGTCGGTGCTAGCGCAGTCGCTGCAGGGCTGGGAGCAGGCGCTCCGCGTGGCCACCGACACGAGCGTCCACCATTTGTTCCAGACGGTCTCCAAGAATGGCGTCCGCAACTTGTCCCCCACCACGTCGGCGGCCCCCCACGCGTCCCCCCAAGCGGACCCCCTGCGCCCCGACTCGCCCGACGGCACGGACACCTAA

Protein

MASESSSAMLDMTDADSDDMDMPTLMDDQEPSPLIMEHGYDIAIKVDAPIKQLSTLETYVTYRVRCVCARWPTPPSVRRRYNHFKVLHKRLSAAHPLTAAPPAPPLHSARQQLDRYSASFVAIRTLALNAFLDRIAKHPILTHSEDFRLFLTTPDEEIDKVFRSENNALNLWGLGSALAYGGDGRHSNGVRVKDPEFSSAVDYLNALQDKLATLCDLTTKLYRGTAALAAEYSSMQRVCDVWSTQCGARCGGTQRGVRGVSAGAGAAGQAAGGRPSPSHRAVLPLLAAYAAAQADKIRQRDRMHAEYVSGTDTSDDLQNRVEEATEALRSELWSWTAKTHQDIKGVLAYIATRQVSVLAQSLQGWEQALRVATDTSVHHLFQTVSKNGVRNLSPTTSAAPHASPQADPLRPDSPDGTDT

Description

May be involved in several stages of intracellular trafficking.

Similarity

Belongs to the sorting nexin family.

Keywords

Protein transport   Transport   Complete proteome   Phosphoprotein   Polymorphism   Reference proteome  

Feature

chain  Sorting nexin-30
sequence variant  In dbSNP:rs2796036.

Uniprot

A0A2H1VFI5   A0A2A4JRB6   A0A2W1BIR7   A0A3S2N724   A0A0L7LP91   A0A3B3R040   + More
A0A3B3R050   J3S4R7   A0A151NEA0   A0A3B3QZG4   G1PK69   A0A151NED2   R7UKX8   Q6GMJ0   H2PT32   A0A2I3GAI5   A0A2K5HPI8   A0A1U8DGR0   W5M4S0   A0A2D4PC24   A0A2K6MAK8   A0A0R4IIY5   A0A3B4E080   A0A2K6PSP1   H0YSM4   A0A2D4PEK8   D4A060   A0A2D4JYZ4   U3JBH0   A0A218UUH9   G7NG62   G1KTU9   A0A2K5RVJ8   K7FWP8   A0A3Q7X5H3   Q4V7P7   A0A3Q0E991   F1SNA5   A0A2R9AWL4   A0A2K5MU48   G3QNL2   K7A3S9   Q5VWJ9   M3W6K4   A0A091N516   A0A2U3VPI0   A0A2D4LQH3   A0A2K5YNA8   A0A093GH97   A0A2Y9H609   A0A2U3YVH6   A0A2D4N287   F6YJC1   A0A3Q7QE99   A0A2K6C194   A0A2K5TWJ5   A0A096P0U9   F7GDT2   F6YJC8   A0A0D9RIV4   A0A2K5D4E2   A0A2K6UVH1   A0A2Y9JAR9   M3Y8M5   G3T2I5   U3DYT1   A0A093RI49   A0A091I1L3   U3F1I2   A0A2K5YNC1   U6D9B4   A0A3Q7SPC0   A0A384DGX4   R7VRS9   A0A2I0M5G9   A0A091R0J6   A0A2I0U8B8   A0A087R110   A0A093HI11   A0A1U7QSI0   A0A093L797   A0A091U1B5   A0A091LB03   A0A0A0ARP1  

Pubmed

28756777    26227816    29240929    23025625    22293439    21993624    + More
23254933    23594743    25362486    20360741    15057822    15632090    22673903    22002653    17381049    22722832    22398555    15164053    18669648    20068231    21269460    24275569    17975172    18464734    17431167    25243066    23371554    26319212   

EMBL

ODYU01002303    SOQ39620.1    NWSH01000762    PCG74359.1    KZ150125    PZC73127.1    + More
RSAL01000277    RVE43093.1    JTDY01000437    KOB77169.1    JU175238    AFJ50762.1    AKHW03003207    KYO35143.1    AAPE02049003    AAPE02049004    AAPE02049005    KYO35142.1    AMQN01007257    KB300307    ELU06895.1    BC074057    AAH74057.1    ABGA01378870    ABGA01378871    ABGA01378872    ABGA01378873    ABGA01378874    ABGA01378875    ABGA01378876    ABGA01378877    ABGA01378878    ABGA01378879    NDHI03003380    PNJ72517.1    ADFV01019658    ADFV01019659    ADFV01019660    ADFV01019661    ADFV01019662    ADFV01019663    ADFV01019664    ADFV01019665    ADFV01019666    ADFV01019667    AHAT01012601    AHAT01012602    IACN01060121    LAB55552.1    CU929325    ABQF01045193    ABQF01045194    ABQF01045195    ABQF01045196    ABQF01045197    IACN01060119    LAB55546.1    AABR07048403    AABR07048404    AABR07048405    CH474039    EDL91629.1    IACL01018701    LAB01658.1    AGTO01011559    MUZQ01000127    OWK57286.1    CM001267    EHH23861.1    AGCU01164325    AGCU01164326    AGCU01164327    AGCU01164328    BC097784    AEMK02000005    AJFE02033618    AJFE02033619    AJFE02033620    AJFE02033621    AJFE02033622    AJFE02033623    AJFE02033624    CABD030065920    CABD030065921    GABC01009095    GABF01009109    GABD01010502    NBAG03000559    JAA02243.1    JAA13036.1    JAA22598.1    PNI15363.1    AL390067    AL360235    AL139041    AANG04004382    KK842725    KFP84893.1    IACM01032402    LAB23264.1    KL216234    KFV68598.1    IACM01135356    LAB39103.1    AQIA01023754    AQIA01023755    AQIA01023756    AQIA01023757    AHZZ02008279    AHZZ02008280    AHZZ02008281    JSUE03014429    JSUE03014430    JSUE03014431    JSUE03014432    JSUE03014433    AQIB01022376    AQIB01022377    AQIB01022378    AQIB01022379    AQIB01022380    AEYP01022963    AEYP01022964    AEYP01022965    AEYP01022966    GAMS01004645    JAB18491.1    KL225291    KFW70579.1    KL218126    KFP02384.1    GAMR01007809    GAMP01001579    GAMP01001578    JAB26123.1    JAB51177.1    HAAF01007731    CCP79555.1    KB376033    EMC78465.1    AKCR02000037    PKK24921.1    KK709966    KFQ32714.1    KZ506009    PKU42295.1    KL226038    KFM07164.1    KL206418    KFV82288.1    KK599163    KFW05126.1    KK410225    KFQ83852.1    KL313394    KFP53534.1    KL872964    KGL97244.1   

Proteomes

UP000218220    UP000283053    UP000037510    UP000261540    UP000050525    UP000001074    + More
UP000014760    UP000001595    UP000001073    UP000233080    UP000189705    UP000018468    UP000233180    UP000000437    UP000261440    UP000233200    UP000007754    UP000002494    UP000016665    UP000197619    UP000001646    UP000233040    UP000007267    UP000286642    UP000189704    UP000008227    UP000240080    UP000233060    UP000001519    UP000005640    UP000011712    UP000245340    UP000233140    UP000053875    UP000248481    UP000245341    UP000002279    UP000286641    UP000233120    UP000233100    UP000028761    UP000006718    UP000029965    UP000233020    UP000233220    UP000248482    UP000000715    UP000007646    UP000054081    UP000054308    UP000008225    UP000286640    UP000261680    UP000053872    UP000053286    UP000053584    UP000189706    UP000053858   

PRIDE

D4A060    Q4V7P7    F1SNA5    Q5VWJ9   

Pfam

PF00787   PX        + More
PF03114   BAR
PF09325   Vps5

Interpro

IPR001683   Phox        + More
IPR027267   AH/BAR_dom_sf       
IPR036871   PX_dom_sf       
IPR028649   SNX30       
IPR004148   BAR_dom       
IPR028656   SNX7       
IPR042130   PX_SNX7       
IPR042131   BAR_SNX7       
IPR015404   Vps5_C       

SUPFAM

SSF64268   SSF64268        + More
SSF103657   SSF103657       

Gene 3D

1.20.1270.60     3.30.1520.10    

CDD

cd07284  PX_SNX7
cd07666  BAR_SNX7

ProteinModelPortal

A0A2H1VFI5   A0A2A4JRB6   A0A2W1BIR7   A0A3S2N724   A0A0L7LP91   A0A3B3R040   + More
A0A3B3R050   J3S4R7   A0A151NEA0   A0A3B3QZG4   G1PK69   A0A151NED2   R7UKX8   Q6GMJ0   H2PT32   A0A2I3GAI5   A0A2K5HPI8   A0A1U8DGR0   W5M4S0   A0A2D4PC24   A0A2K6MAK8   A0A0R4IIY5   A0A3B4E080   A0A2K6PSP1   H0YSM4   A0A2D4PEK8   D4A060   A0A2D4JYZ4   U3JBH0   A0A218UUH9   G7NG62   G1KTU9   A0A2K5RVJ8   K7FWP8   A0A3Q7X5H3   Q4V7P7   A0A3Q0E991   F1SNA5   A0A2R9AWL4   A0A2K5MU48   G3QNL2   K7A3S9   Q5VWJ9   M3W6K4   A0A091N516   A0A2U3VPI0   A0A2D4LQH3   A0A2K5YNA8   A0A093GH97   A0A2Y9H609   A0A2U3YVH6   A0A2D4N287   F6YJC1   A0A3Q7QE99   A0A2K6C194   A0A2K5TWJ5   A0A096P0U9   F7GDT2   F6YJC8   A0A0D9RIV4   A0A2K5D4E2   A0A2K6UVH1   A0A2Y9JAR9   M3Y8M5   G3T2I5   U3DYT1   A0A093RI49   A0A091I1L3   U3F1I2   A0A2K5YNC1   U6D9B4   A0A3Q7SPC0   A0A384DGX4   R7VRS9   A0A2I0M5G9   A0A091R0J6   A0A2I0U8B8   A0A087R110   A0A093HI11   A0A1U7QSI0   A0A093L797   A0A091U1B5   A0A091LB03   A0A0A0ARP1  

PDB

3IQ2     E-value=6.178e-12,     Score=171

KEGG

105841649    no KO assigned | (RefSeq) uncharacterized LOC105841649

GO

GO:0035091   GO:0005737   GO:0097153   GO:0001889   GO:0043066   GO:0015031   GO:0004672   GO:0006468   GO:0006418   GO:0005634   GO:0006303   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR45949:SF1   PTHR45949:SF3  

Length:

419

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00528

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00276

outside

1  -  419

 

 

Pi

207.450745

Theta

155.915023

Tajima's D

1.27381

CLR

0.311041

CSRT

0.734513274336283

Interpretation

Uncertain