Gene

KWMTBOMO14679  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009612

Annotation

PREDICTED:_probable_proline--tRNA_ligase?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr24(+):12583557-12586771      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.446 Mitochondrial   Reliability : 1.444

CDS

ATGAGATATTTATCTCGTATATTTCAACCAGTTATAACAATACCAAAGAATGCTAAGATAAAGAACACGGAAATAACATGTAAAAGTCAGAAGCTGTTACTAGAATGTGGTTTAGTCCGCCCAACTACGTCTGGCTTCTTCACTCTTCTCCCCTTGGCACGTAGAGCACTGGATAAACTTGAGAACCTCATTAAAACCTGCATAGAATCTTCTGGAGCGCAAAGATTGTCATTGCCGGCTCTCACGTCAGCGGGGCTGTGGGCGAAGACTGGCCGCCTGGAGAATGCTGCTGCAGAGCTATTGACCCTGGAAGATAGACACAACAAAAAATATCTGTTGGCTCCGACATACGAAGAGGCAATCGCGGAGTTATTGTCAGACCTCAAGCCGATCTCATACAAGCAACTACCGATTATATTATATCAGGTAAAATTAAACTGTTCTTAG

Protein

MRYLSRIFQPVITIPKNAKIKNTEITCKSQKLLLECGLVRPTTSGFFTLLPLARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWAKTGRLENAAAELLTLEDRHNKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQVKLNCS

Uniprot

H9JJB1   A0A2A4JKU7   A0A2H1WFD1   A0A2W1BJX6   S4P313   A0A194Q9P0   + More
A0A212EIR1   A0A194QUG2   A0A0A1XAV5   A0A084VH98   A0A2P8ZFE6   A0A034VBT6   A0A0K8UEV5   A0A0K8V8I2   A0A336MAS1   A0A0K8UCF6   A0A336M592   A0A1B6DP72   D6WC57   A0A1B6C484   A0A1B6HIW0   A0A182QU97   A0A1B6GM72   A0A1B6MFX8   Q0IEE6   A0A1I8MRT3   A0A182JII1   A0A1A9VHK3   A0A0M4EN92   A0A1I8JUZ4   A0A182V1E4   B4KYF2   A0A182G3B0   A0A1B0FBZ7   A0A1B0AG19   B4HTF1   A0A182KXJ1   Q7QAP8   A0A1B0BFR2   A0A182U533   A0A1I8JTP7   A0A2C9H8K8   A0A1A9Y6U0   A0A182Y7C6   A0A3B0KMU1   A0A1J1J937   A0A1Y1LL22   B4LDT6   A0A1B0C8D2   A0A1I8P2Z3   A0A182M4Y8   B4QNK7   Q9VZY9   B3M7I7   A0A1Y9IVS2   B4IZD4   B0XIT5   Q86P96   B3NBK6   A0A3R7PED5   Q29FB8   B4N398   A0A0P4W0H3   A0A0P4WKV3   A0A0P4WC38   A0A0P5P8E5   A0A1W4W297   B4PDC7   A0A1A9WFJ7   A0A0P5TR34   A0A1L8DHL5   A0A2H8TLW5   A0A0P5V1L7   A0A1L8DHM3   A0A0P5VHJ3   A0A067QQ20   A0A0A9YV78   A0A164Z717   A0A0P6I8D1   A0A0P5VYF4   A0A0P5R0S5   A0A0P5I0G0   A0A0P5WUP6   A0A0P5QKQ0   A0A0P5HAK0   A0A0P5AVD6   A0A0P5UNQ1   A0A0P5D1Q1   A0A2S2NSA3   A0A0P5XW94   A0A0P5SEW4   A0A0P6BPZ7   A0A0P5YND8   A0A0P5SQ69   A0A0P5X868   W5JJZ9   A0A182N4R5   W4XZ81   A0A182FNS6   A0A2S2Q7V4  

Pubmed

19121390    28756777    23622113    26354079    22118469    25830018    + More
24438588    29403074    25348373    18362917    19820115    17510324    25315136    17994087    26483478    20966253    12364791    14747013    17210077    25244985    28004739    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17550304    24845553    25401762    26823975    20920257    23761445   

EMBL

BABH01036404    NWSH01001085    PCG72705.1    ODYU01008302    SOQ51773.1    KZ150125    + More
PZC73136.1    GAIX01006679    JAA85881.1    KQ459249    KPJ02223.1    AGBW02014604    OWR41350.1    KQ461108    KPJ08964.1    GBXI01006442    JAD07850.1    ATLV01013150    KE524842    KFB37342.1    PYGN01000075    PSN55208.1    GAKP01018211    GAKP01018206    GAKP01018203    JAC40741.1    GDHF01027793    GDHF01027140    JAI24521.1    JAI25174.1    GDHF01017424    GDHF01014498    GDHF01011975    JAI34890.1    JAI37816.1    JAI40339.1    UFQT01000821    SSX27375.1    GDHF01027990    GDHF01019235    GDHF01005964    JAI24324.1    JAI33079.1    JAI46350.1    UFQS01000410    UFQT01000410    SSX03674.1    SSX24039.1    GEDC01009839    JAS27459.1    KQ971316    EEZ98764.2    GEDC01028995    JAS08303.1    GECU01033072    GECU01012814    GECU01010734    JAS74634.1    JAS94892.1    JAS96972.1    AXCN02000015    GECZ01006241    JAS63528.1    GEBQ01005178    JAT34799.1    CH477695    EAT37153.1    CP012525    ALC43355.1    CH933809    EDW17731.1    JXUM01141253    KQ569212    KXJ68716.1    CCAG010000101    CH480817    EDW50222.1    AAAB01008888    EAA08954.3    JXJN01013627    APCN01005538    OUUW01000012    SPP87156.1    CVRI01000072    CRL07513.1    GEZM01057514    GEZM01057513    JAV72286.1    CH940647    EDW68959.2    AJWK01000428    AXCM01001019    CM000363    CM002912    EDX08970.1    KMY97174.1    AE014296    BT150200    AAF47674.1    AGS83392.1    CH902618    EDV39885.1    CH916366    EDV96689.1    DS233377    EDS29676.1    BT003289    AAO25049.1    CH954178    EDV50328.1    QCYY01002708    ROT68192.1    CH379067    EAL31337.1    CH964062    EDW78837.1    GDRN01082241    GDRN01082240    JAI61871.1    GDRN01082237    JAI61874.1    GDRN01082235    JAI61875.1    GDIQ01136489    JAL15237.1    CM000159    EDW93907.1    GDIP01123196    JAL80518.1    GFDF01008125    JAV05959.1    GFXV01003310    MBW15115.1    GDIP01108344    JAL95370.1    GFDF01008126    JAV05958.1    GDIP01099845    JAM03870.1    KK853149    KDR10650.1    GBHO01008601    GBHO01002625    GBRD01009873    GDHC01014726    GDHC01002541    JAG35003.1    JAG40979.1    JAG55951.1    JAQ03903.1    JAQ16088.1    LRGB01000781    KZS16017.1    GDIQ01009115    JAN85622.1    GDIP01093402    JAM10313.1    GDIQ01109537    JAL42189.1    GDIQ01219794    JAK31931.1    GDIP01093403    JAM10312.1    GDIQ01112888    JAL38838.1    GDIQ01230436    JAK21289.1    GDIP01194091    JAJ29311.1    GDIP01111742    JAL91972.1    GDIP01162339    JAJ61063.1    GGMR01007430    MBY20049.1    GDIP01066805    JAM36910.1    GDIP01140753    JAL62961.1    GDIP01011521    JAM92194.1    GDIP01055408    JAM48307.1    GDIP01141949    JAL61765.1    GDIP01076037    JAM27678.1    ADMH02001019    ETN64431.1    AAGJ04065343    GGMS01004613    MBY73816.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000030765    + More
UP000245037    UP000007266    UP000075886    UP000008820    UP000095301    UP000075880    UP000078200    UP000092553    UP000075900    UP000075903    UP000009192    UP000069940    UP000249989    UP000092444    UP000092445    UP000001292    UP000075882    UP000007062    UP000092460    UP000075902    UP000075840    UP000076407    UP000092443    UP000076408    UP000268350    UP000183832    UP000008792    UP000092461    UP000095300    UP000075883    UP000000304    UP000000803    UP000007801    UP000075920    UP000001070    UP000002320    UP000008711    UP000283509    UP000001819    UP000007798    UP000192221    UP000002282    UP000091820    UP000027135    UP000076858    UP000000673    UP000075884    UP000007110    UP000069272   

PRIDE

H9JJB1    Q86P96   

Pfam

PF00587   tRNA-synt_2b        + More
PF03129   HGTP_anticodon
PF00560   LRR_1
PF05493   ATP_synt_H
PF00213   OSCP
PF13516   LRR_6

Interpro

IPR006195   aa-tRNA-synth_II        + More
IPR002316   Pro-tRNA-ligase_IIa       
IPR002314   aa-tRNA-synt_IIb       
IPR036621   Anticodon-bd_dom_sf       
IPR033730   ProRS_core_prok       
IPR004154   Anticodon-bd       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR008389   ATPase_V0-cplx_e1/e2_su       
IPR000711   ATPase_OSCP/dsu       
IPR026015   ATP_synth_OSCP/delta_N_sf       
IPR036754   YbaK/aa-tRNA-synt-asso_dom_sf       

SUPFAM

SSF47928   SSF47928       

Gene 3D

3.40.50.800     3.80.10.10     1.10.520.20     3.90.960.10    

CDD

cd00779  ProRS_core_prok

ProteinModelPortal

H9JJB1   A0A2A4JKU7   A0A2H1WFD1   A0A2W1BJX6   S4P313   A0A194Q9P0   + More
A0A212EIR1   A0A194QUG2   A0A0A1XAV5   A0A084VH98   A0A2P8ZFE6   A0A034VBT6   A0A0K8UEV5   A0A0K8V8I2   A0A336MAS1   A0A0K8UCF6   A0A336M592   A0A1B6DP72   D6WC57   A0A1B6C484   A0A1B6HIW0   A0A182QU97   A0A1B6GM72   A0A1B6MFX8   Q0IEE6   A0A1I8MRT3   A0A182JII1   A0A1A9VHK3   A0A0M4EN92   A0A1I8JUZ4   A0A182V1E4   B4KYF2   A0A182G3B0   A0A1B0FBZ7   A0A1B0AG19   B4HTF1   A0A182KXJ1   Q7QAP8   A0A1B0BFR2   A0A182U533   A0A1I8JTP7   A0A2C9H8K8   A0A1A9Y6U0   A0A182Y7C6   A0A3B0KMU1   A0A1J1J937   A0A1Y1LL22   B4LDT6   A0A1B0C8D2   A0A1I8P2Z3   A0A182M4Y8   B4QNK7   Q9VZY9   B3M7I7   A0A1Y9IVS2   B4IZD4   B0XIT5   Q86P96   B3NBK6   A0A3R7PED5   Q29FB8   B4N398   A0A0P4W0H3   A0A0P4WKV3   A0A0P4WC38   A0A0P5P8E5   A0A1W4W297   B4PDC7   A0A1A9WFJ7   A0A0P5TR34   A0A1L8DHL5   A0A2H8TLW5   A0A0P5V1L7   A0A1L8DHM3   A0A0P5VHJ3   A0A067QQ20   A0A0A9YV78   A0A164Z717   A0A0P6I8D1   A0A0P5VYF4   A0A0P5R0S5   A0A0P5I0G0   A0A0P5WUP6   A0A0P5QKQ0   A0A0P5HAK0   A0A0P5AVD6   A0A0P5UNQ1   A0A0P5D1Q1   A0A2S2NSA3   A0A0P5XW94   A0A0P5SEW4   A0A0P6BPZ7   A0A0P5YND8   A0A0P5SQ69   A0A0P5X868   W5JJZ9   A0A182N4R5   W4XZ81   A0A182FNS6   A0A2S2Q7V4  

PDB

5ZNK     E-value=9.81552e-19,     Score=223

KEGG

101736571    K01881 prolyl-tRNA synthetase [EC:6.1.1.15] | (RefSeq) probable proline--tRNA ligase, mitochondrial

GO

GO:0005524   GO:0006433   GO:0005737   GO:0004827   GO:0005739   GO:0015991   GO:0015078   GO:0033179   GO:0016021   GO:0016740   GO:0004820   GO:0015986   GO:0006418   GO:0046933   GO:0004812   GO:0016874   GO:0002161  

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0462300000000001

Exp number, first 60 AAs:

0.04603

Total prob of N-in:

0.13681

outside

1  -  148

 

 

Pi

282.572178

Theta

187.949645

Tajima's D

1.592993

CLR

0.072007

CSRT

0.804859757012149

Interpretation

Uncertain