SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14668
Pre Gene Modal
BGIBMGA009589
Annotation
hypothetical_protein_RF55_8155_[Lasius_niger]
Location in the cell
Nuclear   Reliability : 2.594
 

Sequence

CDS
ATGGTGGCTAAAGACGGCCTAACTTTCAACTGTCTAAGTGCGTCCGAGGACTTAAAATATTTATTCACGAAAAACGGCCTAAGTCTTCCGACGTGCCCTGACGCAATTAAAACTATTGTCGAGAATTTTTCGATGACCGTCAAAGCGGAAATGATAAAAACGCTCCAAAATCTCAAAATACGCGGAGAGAAATTTTCATTGGGATTCGATGAATGGACAACAATTACTTGCAAGCGATATTTAAATGTTAATGTCCATCATTTAGGGGGAACGCATATCAATCTAGGACTGATTCGGATCCACGGCTCTTGCAACGTTGAGCAATGTGTCGAGCTAGTCAAGACGAGACTAGAAGCGTTTATTCTTCATCTTGACACTGACATTGTCGGTATCACAACCGACGACGCGAGCGTCATGAAGAAAGTTGGAAGACTGTTGAGTTGCTACCAACAACTGTGTTTCGCTCACGGCATCCAACTGGCCGTAGTCAACACCTTGTATAGAGAGGAAGTCCCGCATACTCAACATAAAGATAAATTACTAGCCGCTTGTTATTCAGACGATGACGATTCCAGCGAGGAACCAGACTCATCCTATACCCATTTCGAACAGCCTCCAGCTGAACTGATACCCAATTACAGGGGCCTCATCGATAAAGTGAGAAAGGTTGTGAGGCTTTTCCGTAAATCCGCAACGAAGGAGGCCTGTCTGCAGAAGTACGCACGAGAAGACCTCGGCAAGGAATACGGTCTGATCCTCGACTGCAGAACAAAATGGAGTACCCTGTACGACATGCTGGAACGCTTCAAAGTTCTCAAAGGCTGCACGACTAAAGCTTTGATTGATGTTGAATCAGAAATCACATTCACCGAAGACGAGTGGGCTGATATTAAAGATTTACTGCTCAGTTTGCAGCCGCTGAAATTGGGCGTGGAAGTCCTGTGCAGAAGGGACTCTACCCTCCTAACGGCTGACACGACACTCAGATTCATATTGGAGAAGTTGGACAAGCAACAGAGCAGAGTGAGCGGAGATCTCGCCACCGCCCTGCGGATGAGGATAAAGGAACGGCGGACCGACTTATCCGGTATCGTTCTCTATCTCCACAATCCAAAGAAGTACGAGAAATCAGTAAAAAGTCCCGAGGACACGTTTTTATTGCCGAAAAAGAATCGTATCCGGCTTGAGCTAATAAAGATATGCGAGAGGCTGCTGACAGTCAAGGAAGATACAGGCAGGGCTGAGGGTGAGCATTTCGATGACGAAGAAGACAATTCATCAGACGAAGACATAACGCTTCGAGACGAACTGGAAACCGAATTGAGGAAACAGAAAAACGAAACTTGCACTGTGATTGCGCCGATAAAAAGTCAAAATTTCGAGAAGACAATCAAGGCTGAAATGGTTGAATATGAAAACAAGGGTATCAAGGGTAAACATCTGACCATGGTGCACAAATATCTGAACACCATAAGCCCTACAAGCGTCGAGGCGGAGCGCGCCTTCTCCGTCACCGGATACGTATGTAGTCCCATAAGGAACAAGATGACGGATAGGACTTTGGACACTATCTGTTTTCTGCGCTCATACTTCCAGAACAACAAGTAA
Protein
MVAKDGLTFNCLSASEDLKYLFTKNGLSLPTCPDAIKTIVENFSMTVKAEMIKTLQNLKIRGEKFSLGFDEWTTITCKRYLNVNVHHLGGTHINLGLIRIHGSCNVEQCVELVKTRLEAFILHLDTDIVGITTDDASVMKKVGRLLSCYQQLCFAHGIQLAVVNTLYREEVPHTQHKDKLLAACYSDDDDSSEEPDSSYTHFEQPPAELIPNYRGLIDKVRKVVRLFRKSATKEACLQKYAREDLGKEYGLILDCRTKWSTLYDMLERFKVLKGCTTKALIDVESEITFTEDEWADIKDLLLSLQPLKLGVEVLCRRDSTLLTADTTLRFILEKLDKQQSRVSGDLATALRMRIKERRTDLSGIVLYLHNPKKYEKSVKSPEDTFLLPKKNRIRLELIKICERLLTVKEDTGRAEGEHFDDEEDNSSDEDITLRDELETELRKQKNETCTVIAPIKSQNFEKTIKAEMVEYENKGIKGKHLTMVHKYLNTISPTSVEAERAFSVTGYVCSPIRNKMTDRTLDTICFLRSYFQNNK

Summary

Pfam
PF02892   zf-BED        + More
PF05699   Dimer_Tnp_hAT
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR003656   Znf_BED       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR037220   BED_dom       
SUPFAM
SSF53098   SSF53098        + More
SSF57667   SSF57667       
SSF140996   SSF140996       
PDB
6DX0     E-value=0.0354318,     Score=88

Ontologies

Topology

Length:
535
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01037
Exp number, first 60 AAs:
0.00023
Total prob of N-in:
0.00199
outside
1  -  535
 
 

Population Genetic Test Statistics

Pi
39.211597
Theta
53.402487
Tajima's D
-0.853512
CLR
333.945892
CSRT
0.165541722913854
Interpretation
Uncertain
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