Gene

KWMTBOMO14654

Pre Gene Modal

BGIBMGA009595

Annotation

PREDICTED:_cleavage_stimulation_factor_subunit_1_[Papilio_machaon]

Location

Bomo_Chr24(-):12056781-12069501      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.777 Nuclear   Reliability : 1.885

CDS

ATGAAGGAAGACAATGTTGATATTGATACTAAAAACGTTGTTAAAAACCGCGAGCTTCTCTATCGGATGATAATAAGCCAATTGTACTATGACGGCTACCAGCCCATAGCTGCGACGTTGGCAGCAGCCGTACACGCTGACCCTCCGTGTCCTCCCAGCGACAGGTTGCTCAATGTCATGATGGTGGGCCTACAGCATGAGCCAGACAGGAAAGATAGGCTGGCTGCATCGAATGCTGCCGAGCATCTTTTGGGCACAACCGGTTTTGACTTGGAGTACGAAATGGACGCTTCCTCCCTGGCCCCTGAGCCGGCCACGTATGAGACGGCATACGTGACTTCGCACAAGATGTCTTGCCGGGCTGGAGCCTTCAGCCACTGCGGACAGCTGGTGGCCACTGGCAGTGTCGATGCCAGTATCAAGATTTTAGATGTGGAGAGGATGCTCGCGAAATCAGCTCCCGAGGAGGTGGAGCAAGGGAGGGAGCAACAGGGGCATCCCGTCATCAGAACCCTATACGACCACACTGATGAAATTACAGCGCTCGATTTTCATCCCCGAGAACAGATCTTAGTGTCGGCATCAAGGGATAACTGCATCAAGCTCTTCGACATCACCAAAGCATCAGCGAAGAAGGCCTTTAAATCAATTACGGACGCTGAACCAGTACTGTGCGTGGCCTTTCATCCCCTCGGAGATCACATCATAGCCTCGACGACACATCCGGTTATCCGGTTATATGACGTCACTACGAGTCAATGCTTCGTCTGCCCTATACCATCTCATCATCACAAGAAACACGTCAATTCTATTAAATTCTCGCCTAACGGTAAGTATTTTGCGAGCGGCAGCGCTGACGGCTCCATAAAGCTGTGGGACACCGTGTCCAATAGATGTTTCAACACGTTCACGAACGCTCACGAGGGATACGAGGTCTGCTCGGTCGCTTTCACGAAGAACAGCAAGTATCTGCTGACTTCTGGGATGGATTCCTCGATAAAACTGTGGGAACTGGCCAGCAGCAGATGCCTGATCCAATACACGGGAGCCGGAACGACCGGCAAACAGGACCACTACGCCCAGGCCGTGTTCAATCACACCGAGGACTACGTGCTCTTCCCTGACGAGGTGACGACCTCGCTCTGCACTTGGCAGTCGAGGAGCGCCAGCAGGTGCCAGCTGATGTCGCTGGGTCACAACGGGACTGTCAGGTACATAGTACATTCCGGGACCGCACCAGCTTTCCTGACCTGCAGCGACGACTACAGAGCCAGGTTTTGGTACAGGAGGAACACTCATTAG

Protein

MKEDNVDIDTKNVVKNRELLYRMIISQLYYDGYQPIAATLAAAVHADPPCPPSDRLLNVMMVGLQHEPDRKDRLAASNAAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMSCRAGAFSHCGQLVATGSVDASIKILDVERMLAKSAPEEVEQGREQQGHPVIRTLYDHTDEITALDFHPREQILVSASRDNCIKLFDITKASAKKAFKSITDAEPVLCVAFHPLGDHIIASTTHPVIRLYDVTTSQCFVCPIPSHHHKKHVNSIKFSPNGKYFASGSADGSIKLWDTVSNRCFNTFTNAHEGYEVCSVAFTKNSKYLLTSGMDSSIKLWELASSRCLIQYTGAGTTGKQDHYAQAVFNHTEDYVLFPDEVTTSLCTWQSRSASRCQLMSLGHNGTVRYIVHSGTAPAFLTCSDDYRARFWYRRNTH

Similarity

Belongs to the peptidase S1 family.

Uniprot

A0A2H1VG69   A0A3S2NB76   A0A2A4K2F7   H9JJ94   A0A0N1PHC2   E2B769   + More
A0A310SDV4   A0A195C641   A0A154PA66   A0A0L7RDG4   A0A0M8ZPS1   K7JA19   A0A2A3E3I8   A0A088ART9   E1ZYC5   A0A151XA26   A0A2J7RR69   A0A0C9RE98   A0A1Y1MU19   A0A195BD64   A0A158N8W5   F4WM24   A0A067RGL5   A0A1W4XF34   A0A026WXS7   A0A182GGX1   Q0IFW0   A0A2P8YL73   J3JVU0   A0A336KMW2   A0A336LZD0   A0A0K8TM82   A0A1Q3G101   A0A182XUY6   A0A2R7X6A9   A0A1B6M5Q2   A0A146LWW0   A0A023F5D1   A0A1B6EAQ7   A0A0V0GAI6   A0A2J7RR67   A0A182JZ10   A0A182PE04   A0A182QUL8   A0A182XIS8   Q7QCR7   A0A182HTI8   A0A182VN45   A0A182LRS0   A0A0P4VQN1   A0A182N7B8   A0A182JGE7   A0A1J1IC93   A0A1B0FHV9   A0A1A9XNA1   A0A1A9VE13   A0A1B0BS74   A0A1A9ZUN0   W8C054   A0A0A1WE28   A0A034WMG3   A0A1A9WF63   A0A182SYD5   A0A0K8U0U1   J9JK62   B4JH69   A0A0M3QXJ4   A0A2S2NSG0   B4KCH1   A0A1W4W8B2   B4M0Y3   A0A2H8TMI5   B3P517   B3MSY0   A0A2M4BP06   B4QT86   B4IJ20   A0A2M3Z954   Q9V9V0   A0A2M4AJL8   B4PP12   A0A182FFJ3   W5JLE7   A0A2M4AJR7   A0A1I8PLG9   A0A3B0JFC1   Q297R7   B4G2Y0   B4N8S7   E0VRC3   A0A1I8M6I4   C1BU05   J9JM73   A0A195FUS7   E9G5N6   L7MAR6   A0A224YQC6   A0A0N8D6H3   A0A023GJZ7   A0A0P6HF98  

Pubmed

19121390    26354079    20798317    20075255    28004739    21347285    + More
21719571    24845553    24508170    30249741    26483478    17510324    29403074    22516182    23537049    26369729    25244985    26823975    25474469    12364791    14747013    17210077    27129103    24495485    25830018    25348373    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    20920257    23761445    15632085    20566863    25315136    21292972    25576852    28797301   

EMBL

ODYU01002410    SOQ39853.1    RSAL01000128    RVE46489.1    NWSH01000206    PCG78427.1    + More
BABH01036343    KQ460857    KPJ11822.1    GL446149    EFN88430.1    KQ760869    OAD58752.1    KQ978220    KYM96317.1    KQ434856    KZC08717.1    KQ414614    KOC68844.1    KQ438551    KOX67153.1    AAZX01001957    AAZX01016730    KZ288427    PBC25862.1    GL435204    EFN73824.1    KQ982353    KYQ57189.1    NEVH01000611    PNF43331.1    GBYB01014919    JAG84686.1    GEZM01021115    JAV89131.1    KQ976519    KYM82139.1    ADTU01001363    GL888217    EGI64668.1    KK852521    KDR22133.1    KK107064    QOIP01000008    EZA60842.1    RLU19496.1    JXUM01062620    KQ562208    KXJ76407.1    CH477286    EAT44740.1    PYGN01000515    PSN45009.1    APGK01037334    BT127358    KB740948    KB632288    AEE62320.1    ENN77307.1    ERL91547.1    UFQS01000646    UFQT01000646    SSX05707.1    SSX26066.1    UFQS01000316    UFQT01000316    SSX02799.1    SSX23170.1    GDAI01002362    JAI15241.1    GFDL01001564    JAV33481.1    KK857471    PTY27201.1    GEBQ01008727    JAT31250.1    GDHC01007482    JAQ11147.1    GBBI01002384    JAC16328.1    GEDC01002318    JAS34980.1    GECL01001171    JAP04953.1    PNF43330.1    AXCN02000146    AAAB01008859    EAA07802.3    APCN01000536    AXCM01004364    GDKW01001814    JAI54781.1    CVRI01000047    CRK97819.1    CCAG010009819    JXJN01019545    GAMC01001518    JAC05038.1    GBXI01017361    JAC96930.1    GAKP01003592    JAC55360.1    GDHF01032161    JAI20153.1    ABLF02009770    CH916369    EDV92760.1    CP012526    ALC45969.1    GGMR01007490    MBY20109.1    CH933806    EDW14790.1    CH940650    EDW67394.1    GFXV01003067    MBW14872.1    CH954182    EDV52931.1    CH902623    EDV30370.1    GGFJ01005601    MBW54742.1    CM000364    EDX15148.1    CH480846    EDW50973.1    GGFM01004281    MBW25032.1    AE014297    AY094802    AAF57183.1    AAM11155.1    GGFK01007659    MBW40980.1    CM000160    EDW99248.1    ADMH02001223    ETN63599.1    GGFK01007708    MBW41029.1    OUUW01000005    SPP81027.1    CM000070    EAL28138.1    CH479179    EDW24175.1    CH964232    EDW81528.1    DS235465    EEB15929.1    BT078084    HACA01005879    ACO12508.1    CDW23240.1    ABLF02024491    KQ981264    KYN44042.1    GL732532    EFX85597.1    GACK01004776    JAA60258.1    GFPF01006813    MAA17959.1    GDIP01064063    LRGB01000568    JAM39652.1    KZS17962.1    GBBM01001156    JAC34262.1    GDIQ01020270    JAN74467.1   

Proteomes

UP000283053    UP000218220    UP000005204    UP000053240    UP000008237    UP000078542    + More
UP000076502    UP000053825    UP000053105    UP000002358    UP000242457    UP000005203    UP000000311    UP000075809    UP000235965    UP000078540    UP000005205    UP000007755    UP000027135    UP000192223    UP000053097    UP000279307    UP000069940    UP000249989    UP000008820    UP000245037    UP000019118    UP000030742    UP000076408    UP000075881    UP000075885    UP000075886    UP000076407    UP000007062    UP000075840    UP000075903    UP000075883    UP000075884    UP000075880    UP000183832    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000075901    UP000007819    UP000001070    UP000092553    UP000009192    UP000192221    UP000008792    UP000008711    UP000007801    UP000000304    UP000001292    UP000000803    UP000002282    UP000069272    UP000000673    UP000095300    UP000268350    UP000001819    UP000008744    UP000007798    UP000009046    UP000095301    UP000078541    UP000000305    UP000076858   

PRIDE

H9JJ94    Q9V9V0   

Pfam

PF16699   CSTF1_dimer        + More
PF00400   WD40
PF00089   Trypsin
PF16001   DUF4775
PF00069   Pkinase
PF12894   ANAPC4_WD40
PF05346   DUF747

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR038184   CSTF1_dimer_sf       
IPR019775   WD40_repeat_CS       
IPR032028   CSTF1_dimer       
IPR036322   WD40_repeat_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR001254   Trypsin_dom       
IPR001314   Peptidase_S1A       
IPR009003   Peptidase_S1_PA       
IPR033116   TRYPSIN_SER       
IPR031945   DUF4775       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR017441   Protein_kinase_ATP_BS       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR000719   Prot_kinase_dom       
IPR024977   Apc4_WD40_dom       
IPR008010   Tatp1       

SUPFAM

SSF50978   SSF50978        + More
SSF50494   SSF50494       
SSF56112   SSF56112       
SSF50998   SSF50998       

Gene 3D

1.20.960.50     2.130.10.10    

CDD

cd00190  Tryp_SPc

ProteinModelPortal

A0A2H1VG69   A0A3S2NB76   A0A2A4K2F7   H9JJ94   A0A0N1PHC2   E2B769   + More
A0A310SDV4   A0A195C641   A0A154PA66   A0A0L7RDG4   A0A0M8ZPS1   K7JA19   A0A2A3E3I8   A0A088ART9   E1ZYC5   A0A151XA26   A0A2J7RR69   A0A0C9RE98   A0A1Y1MU19   A0A195BD64   A0A158N8W5   F4WM24   A0A067RGL5   A0A1W4XF34   A0A026WXS7   A0A182GGX1   Q0IFW0   A0A2P8YL73   J3JVU0   A0A336KMW2   A0A336LZD0   A0A0K8TM82   A0A1Q3G101   A0A182XUY6   A0A2R7X6A9   A0A1B6M5Q2   A0A146LWW0   A0A023F5D1   A0A1B6EAQ7   A0A0V0GAI6   A0A2J7RR67   A0A182JZ10   A0A182PE04   A0A182QUL8   A0A182XIS8   Q7QCR7   A0A182HTI8   A0A182VN45   A0A182LRS0   A0A0P4VQN1   A0A182N7B8   A0A182JGE7   A0A1J1IC93   A0A1B0FHV9   A0A1A9XNA1   A0A1A9VE13   A0A1B0BS74   A0A1A9ZUN0   W8C054   A0A0A1WE28   A0A034WMG3   A0A1A9WF63   A0A182SYD5   A0A0K8U0U1   J9JK62   B4JH69   A0A0M3QXJ4   A0A2S2NSG0   B4KCH1   A0A1W4W8B2   B4M0Y3   A0A2H8TMI5   B3P517   B3MSY0   A0A2M4BP06   B4QT86   B4IJ20   A0A2M3Z954   Q9V9V0   A0A2M4AJL8   B4PP12   A0A182FFJ3   W5JLE7   A0A2M4AJR7   A0A1I8PLG9   A0A3B0JFC1   Q297R7   B4G2Y0   B4N8S7   E0VRC3   A0A1I8M6I4   C1BU05   J9JM73   A0A195FUS7   E9G5N6   L7MAR6   A0A224YQC6   A0A0N8D6H3   A0A023GJZ7   A0A0P6HF98  

PDB

6B3X     E-value=1.33793e-118,     Score=1091

KEGG

101744320    K14406 cleavage stimulation factor subunit 1 | (RefSeq) cleavage stimulation factor subunit 1

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0004252   GO:0005524   GO:0004672   GO:0005848   GO:0005654   GO:0005515   GO:0003678   GO:0006281   GO:0016020   GO:0004970   GO:0005234   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

PANTHER

PTHR13317  

Length:

433

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.31694

Exp number, first 60 AAs:

0.26729

Total prob of N-in:

0.03923

outside

1  -  433

 

 

Pi

274.93267

Theta

166.892645

Tajima's D

1.92476

CLR

0.137313

CSRT

0.871456427178641

Interpretation

Uncertain