Silkworm Genome Informatics Database

Gene

KWMTBOMO14651

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(-):12034073-12037091 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.988 Nuclear Reliability : 1.716

CDS

ATGATTGCACACCGCAGAACCAGGCCCCTAGTCCCCGGCGGCCCCGCTATTCCTGGTTACGGTAGCGGCCATGGTAACGGCGGGGCAAGGGGTGCTAAGAATCCCCGGCAGAGATCCGGCTACCACCCCCCTTCACAACGACAACTGGCCCTGGTGACATACAACGTGCGCACTTTGAGGTTGGACGAGAAGCTAATAGAGCTGGAAGAAGAAATGAACAAGTTGCGCTGGGACGTTATTGGTTTATCGGAGATCCGAAGAGAGGGGGAGGATACGAAAACCTTACAGTCCGGCCACTTGTTCTACTACCGGGAGGGAGAACAGAAGTCCCAAGGTGGTGTTGGGTTTATCGTCCACAAATCTCTCATAAACAACATTGTGGCCATCGAAAGTGTGTCGAGTAGGGTAGTATACCTTGTCCTCAAAATCTCAAAGCGGTATTCGCTGAAGATTGTACAGGTATACGCCCCATCAACGTCACATCCAGGCGATGAAGTGGCAGCTACGTATGAGGACATTAGTAGGGCCATACGTAACTCCCAATCACATTTTACCATTGTTATGGGAGATTTCAATGCAAAACTGGGCCGTAGAGGCGATGATGAGTTGAAAGTGGGGCCATTTGGATTTGGGCAGCGGAATCCCAGAGGACAGATGCTGGCGGACTTTATGGAGAAGGAAGGACTCTTTATGATGAATTCTTTCTTCAAGAAGCCGCCACAACGGAAATGGACCTGGTTGAGTCCCGACGGTGTAACAAGAAATGAAATCGATTTCATCATGAGCACCAACAGACAGATATTCAACGATGTCTCTGTGATCAACAGTGTTAAAACAGGAAGTGATCACCGAATCGTCAGAGGCATGTTGAATATCAATGTCAGACTGGAAAGATCGCGTCTGATGAAGTCAACGCTTCGACCGTCGAATGCACAAATCCAAAACCCCGAGAGCTTTCAACTCGAATTGGCTAATCGCTTCGAATGGCTAAACAGCTGCGCATCAGTGGACGATGTAAACAGCAGGCTGAGACGCTTGCAAAGCCAGCTGACGAAGCTGAAGACCGAAGATGGACGTGTAACGTCGAATAAGTCAGAGGTCCTGCGGGAGATAGAAAGGTTCTACGGGCAGCTGTTTACCTCGGTCTCAGCTGAACCGCAAGGTTTAGCTGCAGACCCTAGAGCCAAGCTAACCCGACACTACACCGAAGACATCCCGGACATCAGCCTGTACGAGATTAGGATGGCTCTCAAACAGCTTAAGAATAACAAGGCACCGGGCGAGGATGGAATTACTACGGAGCTTCTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTCTTCAATTCCTCTTTGCTCGATGGAAAACCGCCACAGGCATGGAGCAGGGGTGTTGTGATCCTGTTCTTCAAAAAAGGTGACAAAACCTCATTGAAGAACTATAGGCCCATAGCACTGCTGAGCCATATCTACAAGCTGTTCTCGAGAGTCATCACGAAGCGTCTCGAACGCAGGTTTGATGACTTCCAGCCTACCGAACAAGCCGGTTTCCGAAAAGGCTACAGTACCATAGACCACATACATACGCTGCGGCAGATTGTACAGAAGACCGAAGAGTACAATCGGCCATTATGCTTAGCGTTTGTGGACTATGAGAAAGCCTTTGATTCCGTCGAAACATGGGCGGTCCTTAGATCTCTCCAGCGGTGCCGTATTGACCACCGGTACATCGAAGTATTGAAGTGTTTGTATAATAACGCCACCATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCCCTGTAAAGAGAGGAGTGAGACAGGGAGATGTGATATCTCCGAAACTGTTTATCACTGCTCTGGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGACTTGGCATCAATATTAACGACGAATACATCACTCATCTTCGGTTTGCCGATGACATCGTGGTCATGGCAGAGTCGCTGGAAGATTTAGGGCGTTTGCTCGGTGACCTCAGTAGGGTTTCTCAACAAGTGGGTCTTAAAATGAACATGGACAAAACAAAAATCATGTACAATGTCCATGTTGCACCCACCATAGTTACTGTTGGGAGCTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTAGGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGTCTTAAGACAAAGGCGTACAACCAATGTGTGTTACCAGTGATGACTTACGGCTCGGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCGCGCAGCGAGCTATGGAGAGGGCTATGCTCGGCATTTCTCTACGTGATCGAATCCGAAATGAGAAGATCCGTAGAAGAACGAAGGTTGCTGACATAGCCCGTAAAATTAGTGAACTGAAGTGGCAATGGGCCGGCCACATAGCACGAAGAGAGGACGGTCGATGGGGCAGAAAGATCCTGGAGTGGCGACCACGTACTGGCAAGCGCAGTGTGGACGGCCACCTACTAGATGGACCGACGACCTAG

Protein

MIAHRRTRPLVPGGPAIPGYGSGHGNGGARGAKNPRQRSGYHPPSQRQLALVTYNVRTLRLDEKLIELEEEMNKLRWDVIGLSEIRREGEDTKTLQSGHLFYYREGEQKSQGGVGFIVHKSLINNIVAIESVSSRVVYLVLKISKRYSLKIVQVYAPSTSHPGDEVAATYEDISRAIRNSQSHFTIVMGDFNAKLGRRGDDELKVGPFGFGQRNPRGQMLADFMEKEGLFMMNSFFKKPPQRKWTWLSPDGVTRNEIDFIMSTNRQIFNDVSVINSVKTGSDHRIVRGMLNINVRLERSRLMKSTLRPSNAQIQNPESFQLELANRFEWLNSCASVDDVNSRLRRLQSQLTKLKTEDGRVTSNKSEVLREIERFYGQLFTSVSAEPQGLAADPRAKLTRHYTEDIPDISLYEIRMALKQLKNNKAPGEDGITTELLKAGGTPVLKVLQKLFNSSLLDGKPPQAWSRGVVILFFKKGDKTSLKNYRPIALLSHIYKLFSRVITKRLERRFDDFQPTEQAGFRKGYSTIDHIHTLRQIVQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDHRYIEVLKCLYNNATMSVRVQEHCTKEIPVKRGVRQGDVISPKLFITALEDSFKLLEWQGLGININDEYITHLRFADDIVVMAESLEDLGRLLGDLSRVSQQVGLKMNMDKTKIMYNVHVAPTIVTVGSSTLEVVDEYIYLGQAVRLGRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNQCVLPVMTYGSETWCFTRDLFRRLKVAQRAMERAMLGISLRDRIRNEKIRRRTKVADIARKISELKWQWAGHIARREDGRWGRKILEWRPRTGKRSVDGHLLDGPTT

Uniprot

D7F160 A0A3S2N805 W4YXJ0 A0A2G8JFM9 E3NGJ2 A0A016V6A2 + More
A0A016WPY4 A0A016WCB8 A0A016ULU9 A0A016UN79 A0A016THC6 E3MKV4 A0A016T590 A0A016VCD9 A0A016VEC1 A0A016VCU3 A0A016VBP7

Pubmed

20470440 29023486 25730766

EMBL

FJ265545 ADI61813.1 RSAL01001818 RVE40675.1 AAGJ04050748 MRZV01002136 + More
PIK34564.1 DS268655 EFO97114.1 JARK01001353 EYC22263.1 JARK01000173 EYC41342.1 JARK01000388 EYC37469.1 JARK01001370 EYC16150.1 EYC16376.1 JARK01001438 EYC02111.1 DS268453 EFP04265.1 JARK01001473 EYB97806.1 JARK01001348 EYC25050.1 EYC25048.1 EYC25046.1 EYC25049.1

Proteomes

UP000283053 UP000007110 UP000230750 UP000008281 UP000024635

PRIDE

D7F160

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR029052   Metallo-depent_PP-like

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10 3.60.21.10

ProteinModelPortal

D7F160 A0A3S2N805 W4YXJ0 A0A2G8JFM9 E3NGJ2 A0A016V6A2 + More
A0A016WPY4 A0A016WCB8 A0A016ULU9 A0A016UN79 A0A016THC6 E3MKV4 A0A016T590 A0A016VCD9 A0A016VEC1 A0A016VCU3 A0A016VBP7

PDB

6AR3 E-value=1.95774e-06, Score=127

KEGG

101742651 no KO assigned | (RefSeq) uncharacterized LOC101742651

GO

GO:0003964 GO:0004519

Length:

871

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04126

Exp number, first 60 AAs:

0.00223

Total prob of N-in:

0.00159

outside

1 - 871

Pi

361.066548

Theta

216.00396

Tajima's D

2.257594

CLR

0.159505

CSRT

0.91740412979351

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree