Gene

KWMTBOMO14645

Pre Gene Modal

BGIBMGA009597

Annotation

Glutamate_receptor?_ionotropic_kainate_2_[Papilio_machaon]

Location

Bomo_Chr24(-):11835960-11863728      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.03

CDS

ATGAGACCGGAATGGCGATGGATAGTGGTCGTTTTAAACGTCGTCGGAGCCCTGTCTCCGGTTATTAAGATAGGGGCGTTATTCACGGAGGACGAGCGCGGCGGAAGCGAGGAGCTGGCCTTCAAGTACTCCGTGTACAGGATCAATAAGGAGAGAAGCGTCCTGGCTAACAGCACCTTGGTATACGACATCCAATACGCTCCGGCCAAGGATACGTTTAAGACTTACAAACGAGCGTGTTCGCAAGTCAAGTCTGGCGCGGTGGCCTTATTTAGCAGCGGAGGCGACCTTCTCGGTTCGACCCTGGACGCCATCTGCAGGTCTCTGCACGCGCCCCACATGCTGGTCGCCCCGCAAACACGACCTACGTTAAACAACGAATCATTTACGATAAACCTGTATCCGCCGAGGGGTTTGCTAAATGAAGCCTTCGGAGACCTCATTGGATATCTGAATTGGACCAGAATGGGGGTTCTATACGAAGATTTTGGTTACGGGGATCTGAGTATACTGGACATCGCAAAAGACGGACGCGACATGTATGCGGTGCGCTGCGTTGACCCAAAGGACTACAGGAAGTCCCTGATACAACTGAAGGCTCAAAGGATAAAGAACGTTATCGTGGACACTGATCCCGCGAGGTTTCGGCAGCTGGCAAGAGCCATCCTACAATTGCAGATGAACAGCGAAGAATACCACTACATATTCACGTCCTTTGACATGGAGCTCTTCGATCTCGAAGACTTCTATTACAACAGAGTGAACATGAGCGGATGGAGGCTGGTGGATCGGGACTCAGATAAAGTAAAGGACGCTCTACAGGTCATGGAAAAGTTTCATCCGATCGGAGCCTCAATACTAAGTGGAGGACACATCAGGACAGCACCAGCACTGCTATACGACGCCGTCCAGGTTCTAGCCTTGGCGATGTCTTCCACGGAGCTGGTGCAAACGAAGAACGTCTCCTGCGACAAGGACAGTCCCTGGCCGCACGGAAGGGGCCTTCTGGAGAACATCAACACGGTTCAAGCCCACGGCCTGACGGGACCGATACAGCTCAAGGACGGTATCCGGACCAACTTTAGCCTCCAGCTCATGAGGTTATCCGGAGGGGAAACGGGAGGGACAGTGCTGGCTGGTGAATGGAGACCCGGCGAGGGTCTAGTGATCACTGATCCCGCGGCTTACAGACGGGACCCTCCTCCTAACGTCACGCTCACTGTGGTCACCGTTGAAGAAAAACCGTACGTGATGGTTAAGGAAGGCTGGAACTTACAAGGGAACGCCCGCTTCGAAGGGTTCTGTATCGATCTCCTGGCGAGGGTGGCTGCCAGAGCTGGCTTTCACTACCGGCTTCGTCTGGTGCCGGACAATATGTACGGAGCTAGGGACCCGGAGACGGGCCAGTGGAACGGCATCGTGAGGGAACTGATGGACAGGAAAGCTGACATTGCCGTTGCGTCCATGACGATAAACTATGCGCGGGAGGCGGTCATAGATTTTACGAAGCCTTTCATGAACCTCGGGATCGGAATACTTTTCAAGGTCCCGACTTCGCAGCCCACAAGACTCTTTAGCTTCCTGAACCCCCTCGCCATCGAGATATGGCTGTACGTGCTGGCGGCTTACGTGCTGGTCTCCTTCACGCTCTTCGTTATGGCTAGGTTCTCGCCGTACGAGTGGTCCACGACCACGCACGTGTGCGGTCACGAGACGAAACTCCTCACGAACCAGTTCAGCGTCTGCAACTCATTCTGGTTCATCACCGGCACGTTCCTGCGGCAGGGCTCCGGGCTTAACCCCAAGGCGACTTCTACGAGGATAGTCGGTGGAATATGGTGGTTCTTCACGTTAATAATTCTGTCGTCGTACACGGCGAATCTGGCCGCGTTCCTGACGGTCGACAAGACCGTCCTGCCGATCCAGAGCGCTGCCGACCTGGCCGCCCAGAGCACCATCCAGTACGGGACCCTAAACGGCGGCTCCACCATGAGCTTCTTCAGGGATTCAAATATCGACATATACAAGAGGATGTGGCAACAGATGTCCACAGCATCCCCGCCCGCCCTGGTCTCCTCGTACGAGGAGGGCGTCAGGAAGGTCCTGACCGAGAACTACGCGTTCCTCATGGAGTCCACGATGCTGGACCACAGAGTACAGAGGGACTGTAATCTGACGCAGATCGGAGGCCTTTTAGATTCCAAGGGCTACGGAATAGCAACCTGGAAGGGCAGCCCGTGGCGCGACAAGATATCACTAGCGATCCTCGAGCTCCAAGAGAAGGGCGTCATCCAGATCCTGTACGACAAGTGGTGGAAGAACACGGGGGACGTCTGCAACCGTGACGGGAAGGACAGCAAGGCCAATCCGCTCGGTGTGCAGAACATCGGGGGTGTCTTCGTTACTTTACTGTGTGGTCTGGCGCTTTCCATAGTGGTGGCCATACTGGAGTTCTGCTGGAACACCAGGAAGAACGCGTCCCAGGGGAGGCAGTCCCTCTGCAGCGAAATGGGACAGGAGCTGCGCACGGCGATGCGCGGACGCTCCTCCAGCCGGACCGTGCTGAGGCCGGGGTGCTCGCGATGCTCCCCCAACACGCACGTGCCCCCGGCGCCCTCCAGATACGAGGGATGGCTGAGCGGTAGTTTCCGTCATCACTCGTATTTCGTTGAACTCAGTTTATAA

Protein

MRPEWRWIVVVLNVVGALSPVIKIGALFTEDERGGSEELAFKYSVYRINKERSVLANSTLVYDIQYAPAKDTFKTYKRACSQVKSGAVALFSSGGDLLGSTLDAICRSLHAPHMLVAPQTRPTLNNESFTINLYPPRGLLNEAFGDLIGYLNWTRMGVLYEDFGYGDLSILDIAKDGRDMYAVRCVDPKDYRKSLIQLKAQRIKNVIVDTDPARFRQLARAILQLQMNSEEYHYIFTSFDMELFDLEDFYYNRVNMSGWRLVDRDSDKVKDALQVMEKFHPIGASILSGGHIRTAPALLYDAVQVLALAMSSTELVQTKNVSCDKDSPWPHGRGLLENINTVQAHGLTGPIQLKDGIRTNFSLQLMRLSGGETGGTVLAGEWRPGEGLVITDPAAYRRDPPPNVTLTVVTVEEKPYVMVKEGWNLQGNARFEGFCIDLLARVAARAGFHYRLRLVPDNMYGARDPETGQWNGIVRELMDRKADIAVASMTINYAREAVIDFTKPFMNLGIGILFKVPTSQPTRLFSFLNPLAIEIWLYVLAAYVLVSFTLFVMARFSPYEWSTTTHVCGHETKLLTNQFSVCNSFWFITGTFLRQGSGLNPKATSTRIVGGIWWFFTLIILSSYTANLAAFLTVDKTVLPIQSAADLAAQSTIQYGTLNGGSTMSFFRDSNIDIYKRMWQQMSTASPPALVSSYEEGVRKVLTENYAFLMESTMLDHRVQRDCNLTQIGGLLDSKGYGIATWKGSPWRDKISLAILELQEKGVIQILYDKWWKNTGDVCNRDGKDSKANPLGVQNIGGVFVTLLCGLALSIVVAILEFCWNTRKNASQGRQSLCSEMGQELRTAMRGRSSSRTVLRPGCSRCSPNTHVPPAPSRYEGWLSGSFRHHSYFVELSL

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

A0A2A4JAT1   A0A0N1IIG3   A0A194Q9S0   A0A212EM67   A0A0V0J1A3   A0A2H1VVD5   + More
A0A1B6EA31   A0A067R9V5   E0VZN3   K7IZX2   F4WY14   D0Z779   A0A0Q9XFH0   A0A0Q9WKT8   Q9V4A0   A0A0J9S1E4   A0A0R1E749   A0A0P5S833   B4NHH4   A0A0P4YKR1   A0A0Q5SQ15   A0A1W4WBM5   W8BBL3   E9GVY0   B3N0V2   A0A034WGY7   A0A0M4JMC5   A0A2J7QRL0   A0A2J7QRM9   K7IZX8   A0A1B6D2C1   A0A0A1WVU5   A0A1W4W9S7   A0A1W4WA04   A0A195CIL5   A0A1S5VFU6   A0A0C9S217   A0A0C9RZN3   A0A151WTW4   A0A1J0KKX7   A0A195FTG6   A0A195B1P2   W8BS22   A0A3Q9ELH9   T1JJ21   A0A1W4WLK7   T1KI60   A0A1J1I6K8   A0A0P5P9S6   A0A0P5CU32   T1K1M6   Q5U168   E9GVY3   J9JZX7   A0A2H8TFW1   A0A0N8BKL9   A0A0P5QAB2   A0A0N8DDI1   A0A0P5JR30   A0A0P5M6Q7   A0A0P5P9W0   A0A0P5CJV6   A0A0N8DWK4   A0A0P5HQ19   A0A2S2RA20   A0A140CQB6   A0A2H8TI05   B4N6K9   B4LR18   W8CD10   A0A034WQH5   B4JPL9   X1WJJ3   B4H888   A0A140CQD6   A0A1Y3ANQ2   A0A3B0KT10   A0A0R1E6U7   Q0KIF2   B4IIX9   A0A0P5S7V6   A0A0R1E7F3   A0A023GQ97   B3P9S1   A0A034WS41   B7QJW4   B4PW20   A0A1W0X1F2   E0W190   A0A1D1V2X7   Q25412   A0A0P4Y7Z1   A0A0P5HME8   A0A0P5HMH5   V3ZLC1  

Pubmed

26354079    22118469    27006164    24845553    20566863    20075255    + More
21719571    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    24495485    21292972    25348373    26265180    25830018    26752702    28187311    27836740    30542294    27649274    8622118    23254933   

EMBL

NWSH01002322    PCG68530.1    KQ460253    KPJ16365.1    KQ459249    KPJ02258.1    + More
AGBW02013896    OWR42584.1    GDKB01000029    JAP38467.1    ODYU01004673    SOQ44807.1    GEDC01002518    JAS34780.1    KK852794    KDR16434.1    DS235853    EEB18839.1    GL888434    EGI60895.1    CM000831    ACY70466.1    CH933813    KRG07318.1    CH940665    KRF85304.1    AE014135    BT044556    AAF59382.3    AAN06582.3    ACI15751.1    CM002916    KMZ07388.1    CM000161    KRK05004.1    GDIQ01091222    JAL60504.1    CH964272    EDW83543.2    GDIP01226256    JAI97145.1    CH954184    KQS21445.1    GAMC01010490    GAMC01010488    JAB96067.1    GL732569    EFX76369.1    CH902645    EDV34857.2    GAKP01004993    JAC53959.1    KP843198    ALD51336.1    NEVH01011891    PNF31224.1    PNF31226.1    GEDC01017502    JAS19796.1    KR998379    GBXI01011325    AMH85998.1    JAD02967.1    KQ977696    KYN00558.1    KY445572    AQN78507.1    GBYB01014911    JAG84678.1    GBYB01014910    JAG84677.1    KQ982748    KYQ51284.1    KX290689    APC94260.1    KQ981276    KYN43753.1    KQ976681    KYM78200.1    GAMC01010489    JAB96066.1    MK049041    AZQ24982.1    JH431944    CAEY01000109    CVRI01000043    CRK95896.1    GDIQ01153214    JAK98511.1    GDIP01169613    JAJ53789.1    CAEY01001352    CAEY01001353    BT016024    AAV36909.1    EFX76255.1    ABLF02036048    ABLF02036050    ABLF02036052    GFXV01001169    MBW12974.1    GDIQ01168507    JAK83218.1    GDIQ01126170    JAL25556.1    GDIP01044399    JAM59316.1    GDIQ01200993    JAK50732.1    GDIQ01162712    JAK89013.1    GDIQ01131621    JAL20105.1    GDIP01174464    JAJ48938.1    GDIQ01084836    JAN09901.1    GDIQ01224680    JAK27045.1    GGMS01017591    MBY86794.1    KR998358    AMH85977.1    GFXV01001093    MBW12898.1    CH964161    EDW79998.2    CH940649    EDW64557.2    GAMC01002761    JAC03795.1    GAKP01002375    JAC56577.1    CH916372    EDV98849.1    ABLF02016154    ABLF02016155    ABLF02016156    CH479221    EDW34888.1    KR998378    AMH85997.1    MUJZ01069946    OTF69538.1    OUUW01000017    SPP88996.1    KRK04918.1    ABI29182.1    CH480845    EDW50920.1    GDIQ01100031    JAL51695.1    KRK04917.1    ABI29183.2    EDV45234.2    GAKP01002374    JAC56578.1    ABJB010096449    ABJB010309773    ABJB010561277    ABJB010952619    ABJB010966139    ABJB011030856    DS954809    EEC19136.1    EDW99325.2    MTYJ01000024    OQV21276.1    DS235866    EEB19396.1    BDGG01000003    GAU96081.1    X87404    CAA60854.1    GDIP01231359    JAI92042.1    GDIQ01225887    JAK25838.1    GDIQ01248226    JAK03499.1    KB202124    ESO92173.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007151    UP000027135    UP000009046    + More
UP000002358    UP000007755    UP000008792    UP000009192    UP000000803    UP000002282    UP000007798    UP000008711    UP000192221    UP000000305    UP000007801    UP000235965    UP000192223    UP000078542    UP000075809    UP000078541    UP000078540    UP000015104    UP000183832    UP000007819    UP000001070    UP000008744    UP000268350    UP000001292    UP000001555    UP000186922    UP000030746   

PRIDE

Q9V4A0    Q5U168    Q0KIF2   

Pfam

PF01094   ANF_receptor        + More
PF10613   Lig_chan-Glu_bd
PF00060   Lig_chan

Interpro

IPR001828   ANF_lig-bd_rcpt        + More
IPR001320   Iontro_rcpt       
IPR019594   Glu/Gly-bd       
IPR028082   Peripla_BP_I       
IPR001508   Iono_rcpt_met       

SUPFAM

SSF53822   SSF53822       

ProteinModelPortal

A0A2A4JAT1   A0A0N1IIG3   A0A194Q9S0   A0A212EM67   A0A0V0J1A3   A0A2H1VVD5   + More
A0A1B6EA31   A0A067R9V5   E0VZN3   K7IZX2   F4WY14   D0Z779   A0A0Q9XFH0   A0A0Q9WKT8   Q9V4A0   A0A0J9S1E4   A0A0R1E749   A0A0P5S833   B4NHH4   A0A0P4YKR1   A0A0Q5SQ15   A0A1W4WBM5   W8BBL3   E9GVY0   B3N0V2   A0A034WGY7   A0A0M4JMC5   A0A2J7QRL0   A0A2J7QRM9   K7IZX8   A0A1B6D2C1   A0A0A1WVU5   A0A1W4W9S7   A0A1W4WA04   A0A195CIL5   A0A1S5VFU6   A0A0C9S217   A0A0C9RZN3   A0A151WTW4   A0A1J0KKX7   A0A195FTG6   A0A195B1P2   W8BS22   A0A3Q9ELH9   T1JJ21   A0A1W4WLK7   T1KI60   A0A1J1I6K8   A0A0P5P9S6   A0A0P5CU32   T1K1M6   Q5U168   E9GVY3   J9JZX7   A0A2H8TFW1   A0A0N8BKL9   A0A0P5QAB2   A0A0N8DDI1   A0A0P5JR30   A0A0P5M6Q7   A0A0P5P9W0   A0A0P5CJV6   A0A0N8DWK4   A0A0P5HQ19   A0A2S2RA20   A0A140CQB6   A0A2H8TI05   B4N6K9   B4LR18   W8CD10   A0A034WQH5   B4JPL9   X1WJJ3   B4H888   A0A140CQD6   A0A1Y3ANQ2   A0A3B0KT10   A0A0R1E6U7   Q0KIF2   B4IIX9   A0A0P5S7V6   A0A0R1E7F3   A0A023GQ97   B3P9S1   A0A034WS41   B7QJW4   B4PW20   A0A1W0X1F2   E0W190   A0A1D1V2X7   Q25412   A0A0P4Y7Z1   A0A0P5HME8   A0A0P5HMH5   V3ZLC1  

PDB

5KUF     E-value=0,     Score=1760

KEGG

101735379    no KO assigned | (RefSeq) glutamate receptor ionotropic, kainate 2-like

GO

GO:0016021   GO:0030054   GO:0045211   GO:0004970   GO:0060025   GO:0005886   GO:0015277   GO:0035249   GO:0050804   GO:0008066   GO:1904315   GO:0006811   GO:0071484   GO:0071632   GO:0016057   GO:0004872   GO:0005216   GO:0016020   GO:0005234   GO:0003824   GO:0008152   GO:0016491   GO:0015930   GO:0038023  

Subcellular location

  

SignalP

Position:   1 - 17,         Likelihood:  0.636339

 

 

Length:

894

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

91.0876200000002

Exp number, first 60 AAs:

21.59955

Total prob of N-in:

0.95537

POSSIBLE N-term signal

sequence

inside

1  -  6

TMhelix

7  -  29

outside

30  -  531

TMhelix

532  -  554

inside

555  -  611

TMhelix

612  -  634

outside

635  -  797

TMhelix

798  -  820

inside

821  -  894

 

 

Pi

289.939918

Theta

19.014072

Tajima's D

2.347808

CLR

0.211586

CSRT

0.932853357332133

Interpretation

Uncertain