Gene

KWMTBOMO14643

Pre Gene Modal

BGIBMGA009567

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_3_[Bombyx_mori]

Location

Bomo_Chr24(+):11800909-11806798      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.883

CDS

ATGTGGGAAGCTCTCTTTGAATTCATCCTACAAATTCTTACTAACAGCCGTGGTCCAGTGGCAGACGCGGAAACTGGCTTCAAGCAAGTCAACGACCACACAGACGCCGACTTCGCTTTCATCCACGATTCAGCGGAGATAAAATACGAGGTGACCAGGAACTGTAATCTGACCGAAGTCGGGGAGTTGTTCGCCGAGCAGCCTTACGCCATAGCCGTCCAGCAGGGCTCCAGGCTACAGGAGGACATCTCCAGAGCCCTGCTGGAGTTACAGAAGGAACGATTTCTGGAACAGCTGGCTTCCAAATATTGGAACGAAACGCTAAGACAGTCCTGCTCTGATGCCGATGAATCTGAAGGCATCACCCTGGAGAGCTTAGGTGGTGTCTTCATAGCAACGCTGTTTGGTTTGGGTCTAGCGATGATAACTTTGGCCTGGGAGGTGTTTTATTACAAGCGCAAAGAGAAAAATAAGGTGCAGTCGACAAAAGAGAACGTTGAGAGGCCGCCAATCAAGAGCGCTAAGCTCGGAGGGAAAATGGCCGTCGGCGTTGCCAGACTACGGAAGAGAGCTACCAAAATAGGGAAAAAGAAAAACGTCACTATAGGCGATAGTTTTAAGCCGTCCGTTTCATATATCAGCGTTTATCCCAAAGGCGATTATCGTCCTTGA

Protein

MWEALFEFILQILTNSRGPVADAETGFKQVNDHTDADFAFIHDSAEIKYEVTRNCNLTEVGELFAEQPYAIAVQQGSRLQEDISRALLELQKERFLEQLASKYWNETLRQSCSDADESEGITLESLGGVFIATLFGLGLAMITLAWEVFYYKRKEKNKVQSTKENVERPPIKSAKLGGKMAVGVARLRKRATKIGKKKNVTIGDSFKPSVSYISVYPKGDYRP

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

H9JJ66   A0A1B3P5G7   A0A0F7QED2   A0A1B3B6Y7   A0A223HD91   A0A2D0WKS6   + More
A0A2H1VEU5   A0A386H9C9   A0A2D0WKU4   A0A076E630   A0A3G6V6M9   A0A223HCW7   A0A076E642   H9A5S4   A0A2K8GKY0   A0A0U3BYI2   A0A146JYM8   A0A0S1TNU5   A0A140G9I7   A0A345BF09   A0A0N1PH93   A0A3Q8HDA4   A0A1Q1PP61   A0A194QB91   A0A0K8TUD1   A0A212F0K0   A0A2A4JTA7   A0A345BF34   A0A0L7LGN1   A0A1S5VFT5   A0A1B6DCQ9   A0A195FQY1   E2AH45   A0A0S3J2N6   A0A195BK35   A0A1B0D2N4   D6WHU3   A0A158N9Z6   F4WC68   A0A2P8ZDP6   A0A195EKS0   A0A2J7RGC7   E2BSR3   A0A0M5KAR1   A0A0K0PKU4   B0XL62   V5MZ71   A0A026WMY8   Q17GP1   A0A182G2Q8   A0A310SBH3   A0A182YLZ0   A0A1W6L149   A0A1W4XIL7   A0A068F7N4   A0A182MFV8   B4H4M5   A0A0L7QVT7   N6T0C3   M4VR69   A0A0L0CG86   A0A1B3B7D3   A0A3L9LUK4   A0A151WH49   A0A088A868   A0A0C9S0B2   A0A0C9RXP2   A0A1B0CGT3   A0A154P593   A0A182SNM6   A0A182W3Q4   A0A182RRE3   A0A2P9JY84   A0A2A3E8F7   A0A1I8N2M6   A0A1A9W8M4   A0A336LWF4   A0A0H4K920   B3MZN0   A0A336LSJ9   A0A182V0A2   A0A182XAZ8   A0A1A9UEK8   A0A182HX70   A0A1B0ADQ4   B4NC58   A0A385IUT5   A0A1B0AQH3   A0A182K301   A0A1A9XSJ0   A0A182LN75   A0A182PW52   B5DM21   A0A0M4EJA0  

Pubmed

19121390    27538507    25803580    28150741    24998398    30465940    + More
22363688    27006164    28736530    26657286    26812239    27004525    29727827    26354079    26017144    22118469    26227816    28187311    20798317    26626891    18362917    19820115    21347285    21719571    29403074    26265180    24508170    30249741    17510324    26483478    25244985    25880816    17994087    23537049    23517120    26108605    27171401    25315136    26078716    30195211    20966253    15632085   

EMBL

BABH01041574    BABH01041575    BABH01041576    KX655896    AOG12845.1    LC017782    + More
BAR64796.1    KT588082    AOE47992.1    KY283697    AST36356.1    KY019176    ARB05665.1    ODYU01001918    SOQ38794.1    MG546652    AYD42275.1    KY019180    ARB05669.1    KF487713    AII01111.1    MH193957    AZB49403.1    KY283566    AST36226.1    KF487723    AII01121.1    JN836724    AFC91764.2    KX585392    ARO70285.1    KP975100    ALT31619.1    GEDO01000002    JAP88624.1    KR912018    ALM24945.1    KU702639    AMM70666.1    MG820662    AXF48833.1    KQ460253    KPJ16363.1    MF625612    AXY83439.1    KY325448    AQM73610.1    KQ459249    KPJ02260.1    GCVX01000131    JAI18099.1    AGBW02011068    OWR47276.1    NWSH01000720    PCG74622.1    MG820687    AXF48858.1    JTDY01001261    KOB74356.1    KY445571    AQN78506.1    GEDC01013817    JAS23481.1    KQ981305    KYN42878.1    GL439483    EFN67162.1    KT381532    ALR72538.1    KQ976455    KYM85057.1    AJVK01010713    KQ971321    EFA00693.2    ADTU01009924    GL888070    EGI68048.1    PYGN01000087    PSN54615.1    KQ978739    KYN28736.1    NEVH01004401    PNF39889.1    GL450241    EFN81309.1    KP843224    ALD51360.1    KR349063    AKQ25182.1    DS234283    EDS33506.1    KF528687    AHA80144.1    KK107148    QOIP01000009    EZA57395.1    RLU18233.1    CH477257    EAT45826.1    JXUM01139898    JXUM01139899    KQ568972    KXJ68814.1    GGOB01000041    MCH29437.1    KX609440    ARN17847.1    KJ702118    AID61272.1    AXCM01001012    CH479209    EDW32637.1    KQ414721    KOC62738.1    APGK01057505    APGK01057506    KB741280    ENN70958.1    KC113421    AGI05169.1    JRES01000424    KNC31398.1    KU291864    AOE48114.1    KB465734    RLZ02177.1    KQ983135    KYQ47179.1    GBYB01013966    JAG83733.1    GBYB01013965    JAG83732.1    AJWK01011573    KQ434820    KZC07022.1    KY817073    AVH87289.1    KZ288325    PBC28053.1    UFQT01000156    SSX20993.1    KM979274    AKO90022.1    CH902635    EDV33831.1    SSX20992.1    APCN01005146    CH964239    EDW82417.1    MH230259    AXY87918.1    JXJN01001873    CH379064    EDY72537.1    CP012528    ALC49166.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000218220    UP000037510    + More
UP000078541    UP000000311    UP000078540    UP000092462    UP000007266    UP000005205    UP000007755    UP000245037    UP000078492    UP000235965    UP000008237    UP000002320    UP000053097    UP000279307    UP000008820    UP000069940    UP000249989    UP000076408    UP000192223    UP000075883    UP000008744    UP000053825    UP000019118    UP000037069    UP000075809    UP000005203    UP000092461    UP000076502    UP000075901    UP000075920    UP000075900    UP000242457    UP000095301    UP000091820    UP000007801    UP000075903    UP000076407    UP000078200    UP000075840    UP000092445    UP000007798    UP000092460    UP000075881    UP000092443    UP000075882    UP000075885    UP000001819    UP000092553   

PRIDE

H9JJ66   

Pfam

PF00060   Lig_chan        + More
PF10613   Lig_chan-Glu_bd
PF00497   SBP_bac_3
PF09794   Avl9

Interpro

IPR001508   Iono_rcpt_met        + More
IPR001320   Iontro_rcpt       
IPR019594   Glu/Gly-bd       
IPR001638   Solute-binding_3/MltF_N       
IPR018307   ABL9/DENND6_dom       
IPR037516   Tripartite_DENN       
IPR028082   Peripla_BP_I       

SUPFAM

SSF53822   SSF53822       

ProteinModelPortal

H9JJ66   A0A1B3P5G7   A0A0F7QED2   A0A1B3B6Y7   A0A223HD91   A0A2D0WKS6   + More
A0A2H1VEU5   A0A386H9C9   A0A2D0WKU4   A0A076E630   A0A3G6V6M9   A0A223HCW7   A0A076E642   H9A5S4   A0A2K8GKY0   A0A0U3BYI2   A0A146JYM8   A0A0S1TNU5   A0A140G9I7   A0A345BF09   A0A0N1PH93   A0A3Q8HDA4   A0A1Q1PP61   A0A194QB91   A0A0K8TUD1   A0A212F0K0   A0A2A4JTA7   A0A345BF34   A0A0L7LGN1   A0A1S5VFT5   A0A1B6DCQ9   A0A195FQY1   E2AH45   A0A0S3J2N6   A0A195BK35   A0A1B0D2N4   D6WHU3   A0A158N9Z6   F4WC68   A0A2P8ZDP6   A0A195EKS0   A0A2J7RGC7   E2BSR3   A0A0M5KAR1   A0A0K0PKU4   B0XL62   V5MZ71   A0A026WMY8   Q17GP1   A0A182G2Q8   A0A310SBH3   A0A182YLZ0   A0A1W6L149   A0A1W4XIL7   A0A068F7N4   A0A182MFV8   B4H4M5   A0A0L7QVT7   N6T0C3   M4VR69   A0A0L0CG86   A0A1B3B7D3   A0A3L9LUK4   A0A151WH49   A0A088A868   A0A0C9S0B2   A0A0C9RXP2   A0A1B0CGT3   A0A154P593   A0A182SNM6   A0A182W3Q4   A0A182RRE3   A0A2P9JY84   A0A2A3E8F7   A0A1I8N2M6   A0A1A9W8M4   A0A336LWF4   A0A0H4K920   B3MZN0   A0A336LSJ9   A0A182V0A2   A0A182XAZ8   A0A1A9UEK8   A0A182HX70   A0A1B0ADQ4   B4NC58   A0A385IUT5   A0A1B0AQH3   A0A182K301   A0A1A9XSJ0   A0A182LN75   A0A182PW52   B5DM21   A0A0M4EJA0  

PDB

4UQQ     E-value=1.75009e-13,     Score=181

KEGG

101738397    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, kainat

GO

GO:0004970   GO:0005886   GO:0016021   GO:0006811   GO:0032281   GO:0004971   GO:0036082   GO:0015026   GO:0071311   GO:0005102   GO:0032590   GO:0005887   GO:0043235   GO:0010157   GO:0004984   GO:0071683   GO:0050850   GO:0042048   GO:0019226  

Length:

223

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.68271

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00172

outside

1  -  127

TMhelix

128  -  150

inside

151  -  223

 

 

Pi

20.919035

Theta

19.276582

Tajima's D

0.935361

CLR

0.199651

CSRT

0.646017699115044

Interpretation

Uncertain