Gene

KWMTBOMO14642

Pre Gene Modal

BGIBMGA009567

Annotation

PREDICTED:_glutamate_receptor_ionotropic?_kainate_3_[Bombyx_mori]

Location

Bomo_Chr24(+):11788819-11797073      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.573

CDS

ATGAACTTTGACTACGAGATCGTTTCACCGAGGAGCGGGGGATTCGGAAGGAGGCTACCTAATGGCTCCTGGGACGGTGTCGTCGGTGACCTCACTACGGGGGAGACCGACATAGCCGTCGCTGCGTTGACCATGACGGCTGAGAGGGAGGAAGTCATAGATTTCGTGGCGCCATACTTCGAACAGACAGGAATATTGATAGCGATTAGGAAGCCAATACGGAAGACGTCCCTCTTCAAGTTCATGACGGTACTCCGCACTGAGGTTTGGCTCAGCATCGTGGCGGCTCTCGTTCTAACCGGCTTCATGATTTGGCTGCTGGAGAAGTATTCCCCTTACTCGGCGAAGAACAATCCAGGGGCCTACCCATATCCTTGCAGAGATTTTACGCTGAAAGAGAGCTTTTGGTTCGCCCTGACCTCATTCACTCCTCAAGGCGGCGGAGAAGCTCCGAAAGCCCTCTCAGGCAGGACCCTCGTGGCTGCCTACTGGTTATTCGTGGTGCTGATGCTGGCCACATTCACGGCGAACCTTGCTGCTTTCCTCACGGTCGAGAGGATGCAGACTCCGGTGTCATCATTGGAACAGTTGGCGCGTCAATCCCGCATCAATTATACAGTCGTCGAAGGTTCTAGCACGCATCAATACTTCATCAATATGAAGTTCGCCGAAGATACACTATACAGGTATGCATTTTAA

Protein

MNFDYEIVSPRSGGFGRRLPNGSWDGVVGDLTTGETDIAVAALTMTAEREEVIDFVAPYFEQTGILIAIRKPIRKTSLFKFMTVLRTEVWLSIVAALVLTGFMIWLLEKYSPYSAKNNPGAYPYPCRDFTLKESFWFALTSFTPQGGGEAPKALSGRTLVAAYWLFVVLMLATFTANLAAFLTVERMQTPVSSLEQLARQSRINYTVVEGSSTHQYFINMKFAEDTLYRYAF

Similarity

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.

Uniprot

H9JJ66   A0A223HD91   A0A2D0WKU4   A0A140G9I7   A0A2D0WKS6   A0A0U3BYI2   + More
A0A0S1TNU5   A0A076E630   A0A212F0K0   A0A2H1VEU5   A0A386H9C9   A0A146JYM8   A0A0F7QED2   A0A345BF34   A0A2K8GKY0   A0A345BF09   A0A1Q1PP61   A0A076E642   A0A3G6V6M9   A0A223HCW7   H9A5S4   A0A3Q8HDA4   A0A194QB91   A0A0K8TUD1   A0A1B3P5G7   A0A1B0CGT3   A0A1B3B7D3   A0A1A9W8M4   A0A1B0D2N4   A0A1W6L149   A0A0S3J2N6   A0A0T6AU00   A0A1B0GFM5   Q1PQ92   A0A3L9LUK4   A0A2J7RGC2   E2BSR3   E2AH45   A0A026WMY8   M4VR69   A0A310SBH3   N6T0C3   A0A2P8ZDP6   A0A1A9UEK8   A0A1W4XIL7   E0W2Q6   A0A385IUV3   A0A1B0ADQ4   A0A3Q7YRF7   A0A3Q7YR80   A0A3Q7YRA6   A0A3Q7YSK1   D6WHU3   A0A2J7RGC7   A0A1A9XSJ0   A0A1B0AQH3   A0A068F7N4   A0A182SNM6   A0A0N0U733   A0A0C9RXP2   A0A0C9S0B2   A0A088A868   A0A3Q9EL68   A0A182YLZ0   A0A195CUQ6   A0A2P9JY84   A0A348AZW7   A0A0L0CG86   F4WC68   A0A0L7QVT7   A0A158N9Z6   A0A182RRE3   A0A151WH49   A0A182PW52   Q7QDT5   A0A0M4EJA0   A0A182LN75   A0A182MFV8   A0A2A3E8F7   A0A0K8VZJ6   A0A182HX70   A0A182W3Q4   A0A0Q9XH31   B3MZN0   Q17GP1   A0A1I8N2M6   A0A3B0KRS2   A0A182XAZ8   A0A182NDI8   A0A182K301   A0A1W4VGT8   V5MZ71   B4NC58   B5DM21   B4PWU2   A0A0K0PKU4   A0A0N1PH93   A0A182QV01   A0A0M5KAR1   B3NT92  

Pubmed

19121390    28150741    27004525    26657286    26812239    24998398    + More
22118469    25803580    29727827    28736530    30465940    22363688    27006164    26354079    26017144    27538507    27171401    26626891    16520459    20798317    24508170    30249741    23517120    23537049    29403074    20566863    30195211    18362917    19820115    25880816    30542294    25244985    30026095    26108605    21719571    21347285    12364791    14747013    17210077    20966253    17994087    17510324    25315136    15632085    17550304    26265180   

EMBL

BABH01041574    BABH01041575    BABH01041576    KY283697    AST36356.1    KY019180    + More
ARB05669.1    KU702639    AMM70666.1    KY019176    ARB05665.1    KP975100    ALT31619.1    KR912018    ALM24945.1    KF487713    AII01111.1    AGBW02011068    OWR47276.1    ODYU01001918    SOQ38794.1    MG546652    AYD42275.1    GEDO01000002    JAP88624.1    LC017782    BAR64796.1    MG820687    AXF48858.1    KX585392    ARO70285.1    MG820662    AXF48833.1    KY325448    AQM73610.1    KF487723    AII01121.1    MH193957    AZB49403.1    KY283566    AST36226.1    JN836724    AFC91764.2    MF625612    AXY83439.1    KQ459249    KPJ02260.1    GCVX01000131    JAI18099.1    KX655896    AOG12845.1    AJWK01011573    KU291864    AOE48114.1    AJVK01010713    KX609440    ARN17847.1    KT381532    ALR72538.1    LJIG01022801    KRT78643.1    CCAG010022501    DQ334162    ABC73508.1    KB465734    RLZ02177.1    NEVH01004401    PNF39891.1    GL450241    EFN81309.1    GL439483    EFN67162.1    KK107148    QOIP01000009    EZA57395.1    RLU18233.1    KC113421    AGI05169.1    GGOB01000041    MCH29437.1    APGK01057505    APGK01057506    KB741280    ENN70958.1    PYGN01000087    PSN54615.1    DS235879    EEB19912.1    MH230260    AXY87919.1    GQ316689    ADG54644.1    GQ316659    GQ316660    GQ316662    GQ316663    GQ316664    GQ316665    GQ316666    GQ316667    GQ316668    GQ316669    GQ316670    ADG54614.1    ADG54615.1    ADG54617.1    ADG54618.1    ADG54619.1    ADG54620.1    ADG54621.1    ADG54622.1    ADG54623.1    ADG54624.1    ADG54625.1    GQ316686    GQ316687    GQ316688    GQ316692    GQ316693    ADG54641.1    ADG54642.1    ADG54643.1    ADG54647.1    ADG54648.1    GQ316672    GQ316673    GQ316674    GQ316675    GQ316676    GQ316677    GQ316678    GQ316680    GQ316681    GQ316682    GQ316683    GQ316684    ADG54627.1    ADG54628.1    ADG54629.1    ADG54630.1    ADG54631.1    ADG54632.1    ADG54633.1    ADG54635.1    ADG54636.1    ADG54637.1    ADG54638.1    ADG54639.1    KQ971321    EFA00693.2    PNF39889.1    JXJN01001873    KJ702118    AID61272.1    KQ435720    KOX78574.1    GBYB01013965    JAG83732.1    GBYB01013966    JAG83733.1    MK049043    AZQ24984.1    KQ977276    KYN04416.1    KY817073    AVH87289.1    FX985958    BBD43493.1    JRES01000424    KNC31398.1    GL888070    EGI68048.1    KQ414721    KOC62738.1    ADTU01009924    KQ983135    KYQ47179.1    AAAB01008849    EAA07123.4    CP012528    ALC49166.1    AXCM01001012    KZ288325    PBC28053.1    GDHF01008289    JAI44025.1    APCN01005146    CH933815    KRG07589.1    CH902635    EDV33831.1    CH477257    EAT45826.1    OUUW01000015    SPP88596.1    KF528687    AHA80144.1    CH964239    EDW82417.1    CH379064    EDY72537.1    CM000162    EDX02826.1    KR349063    AKQ25182.1    KQ460253    KPJ16363.1    AXCN02001759    KP843224    ALD51360.1    CH954180    EDV46272.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000092461    UP000091820    UP000092462    + More
UP000092444    UP000235965    UP000008237    UP000000311    UP000053097    UP000279307    UP000019118    UP000245037    UP000078200    UP000192223    UP000009046    UP000092445    UP000007266    UP000092443    UP000092460    UP000075901    UP000053105    UP000005203    UP000076408    UP000078542    UP000037069    UP000007755    UP000053825    UP000005205    UP000075900    UP000075809    UP000075885    UP000007062    UP000092553    UP000075882    UP000075883    UP000242457    UP000075840    UP000075920    UP000009192    UP000007801    UP000008820    UP000095301    UP000268350    UP000076407    UP000075884    UP000075881    UP000192221    UP000007798    UP000001819    UP000002282    UP000053240    UP000075886    UP000008711   

PRIDE

H9JJ66   

Pfam

PF00060   Lig_chan        + More
PF10613   Lig_chan-Glu_bd

Interpro

IPR001508   Iono_rcpt_met        + More
IPR001320   Iontro_rcpt       
IPR019594   Glu/Gly-bd       
IPR028082   Peripla_BP_I       

SUPFAM

SSF53822   SSF53822       

ProteinModelPortal

H9JJ66   A0A223HD91   A0A2D0WKU4   A0A140G9I7   A0A2D0WKS6   A0A0U3BYI2   + More
A0A0S1TNU5   A0A076E630   A0A212F0K0   A0A2H1VEU5   A0A386H9C9   A0A146JYM8   A0A0F7QED2   A0A345BF34   A0A2K8GKY0   A0A345BF09   A0A1Q1PP61   A0A076E642   A0A3G6V6M9   A0A223HCW7   H9A5S4   A0A3Q8HDA4   A0A194QB91   A0A0K8TUD1   A0A1B3P5G7   A0A1B0CGT3   A0A1B3B7D3   A0A1A9W8M4   A0A1B0D2N4   A0A1W6L149   A0A0S3J2N6   A0A0T6AU00   A0A1B0GFM5   Q1PQ92   A0A3L9LUK4   A0A2J7RGC2   E2BSR3   E2AH45   A0A026WMY8   M4VR69   A0A310SBH3   N6T0C3   A0A2P8ZDP6   A0A1A9UEK8   A0A1W4XIL7   E0W2Q6   A0A385IUV3   A0A1B0ADQ4   A0A3Q7YRF7   A0A3Q7YR80   A0A3Q7YRA6   A0A3Q7YSK1   D6WHU3   A0A2J7RGC7   A0A1A9XSJ0   A0A1B0AQH3   A0A068F7N4   A0A182SNM6   A0A0N0U733   A0A0C9RXP2   A0A0C9S0B2   A0A088A868   A0A3Q9EL68   A0A182YLZ0   A0A195CUQ6   A0A2P9JY84   A0A348AZW7   A0A0L0CG86   F4WC68   A0A0L7QVT7   A0A158N9Z6   A0A182RRE3   A0A151WH49   A0A182PW52   Q7QDT5   A0A0M4EJA0   A0A182LN75   A0A182MFV8   A0A2A3E8F7   A0A0K8VZJ6   A0A182HX70   A0A182W3Q4   A0A0Q9XH31   B3MZN0   Q17GP1   A0A1I8N2M6   A0A3B0KRS2   A0A182XAZ8   A0A182NDI8   A0A182K301   A0A1W4VGT8   V5MZ71   B4NC58   B5DM21   B4PWU2   A0A0K0PKU4   A0A0N1PH93   A0A182QV01   A0A0M5KAR1   B3NT92  

PDB

5IDF     E-value=2.63955e-34,     Score=361

KEGG

101738397    K05313 glutamate receptor, ionotropic, invertebrate | (RefSeq) glutamate receptor ionotropic, kainat

GO

GO:0004970   GO:0005886   GO:0016021   GO:0006811   GO:0032281   GO:0004971   GO:0042048   GO:0071683   GO:0010157   GO:0043235   GO:0036082   GO:0019226   GO:0050850   GO:0004984   GO:0005887   GO:0005102   GO:0032590   GO:0071311   GO:0015026   GO:0005234   GO:0016020   GO:0004872   GO:0005216   GO:0003824   GO:0008152   GO:0016491   GO:0015930   GO:0038023  

Length:

232

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.67353

Exp number, first 60 AAs:

0.41804

Total prob of N-in:

0.83739

inside

1  -  88

TMhelix

89  -  107

outside

108  -  159

TMhelix

160  -  182

inside

183  -  232

 

 

Pi

242.170082

Theta

183.749586

Tajima's D

2.151987

CLR

0.549516

CSRT

0.904104794760262

Interpretation

Uncertain