Silkworm Genome Informatics Database

Gene

KWMTBOMO14640

Pre Gene Modal

BGIBMGA009565

Annotation

PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(+):11754919-11763765 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.173

CDS

ATGTATGCCAAGGGCAAGGGCTCTACGGTGCCTTCGGACGCTCAGGCCCGCGAGAAATTAGCGTTATATGTGTACGAATATTTATTGCACGTCGGCGCTACCAAAGCGGCCCAAACATTTCTTTCGGAAATACGATGGGAGAAGAATATAACGTTGGGGGAGCCTCCGGGGTTCCTGCATTCGTGGTGGTGCGTGTTCTGGGACCTATATTGCGCTGCTCCGGAGAGACGCGACACGTGTGAACATTCATCCGAGGCAAAGGCATTTCACGATTACGGATTTGTTAATTCTGGATATGGAGTCAACGGTATTGGACACAACGCCGGCCCGGCACCTCCTAACGACGGTATGGGTGGTGGAGGAATGCCACCAGGTTTCTTTCCGAATTCGCCTCTTCGTCCGTCACCGCCGGCACCTCACCCTGGGTCGCAGCCGTCGCCTCACGGTCCCCAGCCACAGCTCATGGGCACGGGGCAGCCTTTCATCGGACCTTGGTATTCGGCAGGTGGCCCGAGGGGCGCAGTCAGGATGGGGATGGGGAATGATTTCAATGGACCGCCAGGTCAGGGGATGATGGGTAATTCAATGGAAAGAGGGGGGTCAGGTGCTGCAGGACTGCTGGGGCCCAGGATGACGCCGCCGAGGCCCGGCATGGGACCCATGAGTCCAGGGGCGTACGCAGCGGGAATGCGAGGTCCACCACCTCAGGGACCAGGTATGGCGCCGATGGGCATGGGGCCGCGCGGGGCGTGGTCAGGCGGTGGGGCGGGCGGGGCGGCGCCCCTCAACTACAGCGGGGGCTCGCCCGGCGCGTACGGGCCGCCCTCGGGCTCCAACGGCCCCCCGGGACCGCCCACACCCATCATGCCCAGCCCGCAAGACTCTTCTAACTCTGTTTGTCCAGGCCTCGGGGGCGTGGACGGCATGAAGTCGTCTCCCGGGGGCGTGGGCGGCGGCGGCCCCGGTACACCCCGGGAGGACTCCGGATCCGGAATGGGCGATTATAATTTAAGTTTCGGGGGACCCGGAGGCGACCAAAGCGACCAAACGGAATCCGCAGCAATACTTAAGATAAAAGAGAGCATGCAGGAAGAGGCGAAACGTTTCGAGAAAGATCCTGATCATCCGGACTACTTCATGCAGTGA

Protein

MYAKGKGSTVPSDAQAREKLALYVYEYLLHVGATKAAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYGFVNSGYGVNGIGHNAGPAPPNDGMGGGGMPPGFFPNSPLRPSPPAPHPGSQPSPHGPQPQLMGTGQPFIGPWYSAGGPRGAVRMGMGNDFNGPPGQGMMGNSMERGGSGAAGLLGPRMTPPRPGMGPMSPGAYAAGMRGPPPQGPGMAPMGMGPRGAWSGGGAGGAAPLNYSGGSPGAYGPPSGSNGPPGPPTPIMPSPQDSSNSVCPGLGGVDGMKSSPGGVGGGGPGTPREDSGSGMGDYNLSFGGPGGDQSDQTESAAILKIKESMQEEAKRFEKDPDHPDYFMQ

Uniprot

H9JJ64

Pubmed

19121390

EMBL

BABH01041570

Proteomes

UP000005204

PRIDE

H9JJ64

Interpro

IPR008116 SSDP_DNA-bd + More
IPR006594 LisH

ProteinModelPortal

H9JJ64

KEGG

101738257 no KO assigned | (RefSeq) Lcaf; single-stranded DNA-binding protein 3

GO

GO:0003697 GO:0005515 GO:0005840 GO:0006412 GO:0005839 GO:0051603 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

381

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.48824

Exp number, first 60 AAs:

0.48308

Total prob of N-in:

0.04546

outside

1 - 381

Pi

169.366204

Theta

154.063729

Tajima's D

0.226537

CLR

0.294338

CSRT

0.434778261086946

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics