Silkworm Genome Informatics Database

Gene

KWMTBOMO14631

Pre Gene Modal

BGIBMGA009552

Annotation

PREDICTED:_uncharacterized_protein_LOC106721395_[Papilio_machaon]

Location

Bomo_Chr24(-):11591933-11599388 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.495

CDS

ATGTCGGTTGGCCTCCGCGGAGTATCTTCGTCCTCAGAGACCATGTCCGAGAGCACGTTAGAGAGAAACCGAGCTGAAAAGGCTCTGATAACAAAAACTCCAACGCATACGTTACTCAAAAGTAATATTAAAAATTATTCGGACAGGAACGGGAACGATGTCACGGAAACCGTACACAGAGGGAGGAAAACCTTCGCATTTTGGACTCTCGTTTGTCTTTTATTCGTATTGGCTATCGGGAACTTAATTCTGACATTCACGATACTAGCCGTCTTGAGATTGGGACAAGGTCTAGAGAGCATGGAGTTTCTTCCGGAACACAATGCTATAAAGTTCTTTGGTAAAACCAACTTGGAGAATGTATATAAGAGAGACGGTTTGATTGAGAGCTTCAGTGATACACCCATGAGCATAACCAGCGAGAATGGCTCTGTTCTATTCAATCTACAGACTAGACTATCACGATCGGACACGAAACTGCTAATGAATTCGTCCGGGGTCTTCATCCGCGGCGTGAACTCGTTGGAGCTGATCAGCCTCGACTCCGGGGAGGCTGCGTTCAGCACAGCATCCCCCGAGATCAATATACACGAGCCGATCAACAATTTGCAGGCGAAAATGGTGAATAAATATAAAAAAAAAACTAAGCAAGGGACGTGGGATGAAAATGCTATGCAAACGGCTATTAATTTGTGCAAAGCTGGAGAATCAATAAAAAGCACAGCTAAAAAGTATGGTTTGGCTTATGCAACCTTGTATAGGCATGTAAAAACCGGCACCGTTGCTTCAAAGCTTGGTCGATTCCGTCCGGTTTTCACTGAAGATCAGGAAATAGAGTTGGTGACATATCTCAAAGATATGGATTCTGTATTTTTTGGCTTGACTCGAGATGAATTCAAAAATTTAGCGTTCATCTACGCCAAGAAAAATAATTTGAACTACCCGAATAACTGGGACAAGTACGAAAAAGCTGGAGATGATTGGCTATCGTCATTTTTGTCTCGTCACAATCAAATATCCCTCAGGACTCCAGAGGCAACATCGGTTGCAAGGGCAAAAGGATTTAATAGACATGAAGTTGGCCGTTTTTATGAAAACCTTGAAGCTTTAACAGTAAAATATGATATTGATGCATCTAGATTATACAACATGGATGAAACTGGTATATCTACAACCACAAATAAGCCGCCTAAAGTGCTATCAACGAAAGGAAAGAAACAAGTGGGCATCATCGCCAGTGCAGAACGTGGTCAATTAACTACTGTCATAGGTTGTTGTAATGCCGCTGGTTCATTCCTCCCACCATTCTTAATTTTCGCCAGAAAAAAGATGCAACCCAGACTACTTGATGGTGCGCCTCCCGGCACTCAAGGAACCTGTACTCCAAATGGTTGGACTTCAGGTGAGGTATTCCTTGATTGGATGCATTTTTTTGTGGAACATGTTCGACCTACCCCTGAGAAAAAAATACTTCTATTATTGGATAACCACGAGAGCCATAAGTATTACCCAGCTTTAGATTACGCCAGCAAGAACAATGTCGTAATTTTATCCTTGGCCCCACACACAACTCATAAAATGCAGCCCATGGATGTAGCGGTATACGGCCCACTAAAAACTTACTTTGAAAGGGAGATAAATTTCTTCCAAAAATCGCACCCAGGACGCATTATAAATCAATACGATGTAGCCAGACTGCTATCACCAGCTTTTCTGAAAAGTGCAGTAGCTCAAAATGCAGTTCATGGATTTGAAAGACCTGGTATTTGGCCAGTGAACAAATATGCTTTTGGTGACGAAGATTATGAGCCAGCCGCTGTTTTTGCAGGCATGTCTAATATGAATATTGGCACAAAAAGTACAAACTCACTAGAAACGATAGATATTCCCAGACCTTCTGTAGACACTTCTTCAACTCCTTCGCCTTCGCTTCTTCAAGAACAGATTCCATCAAGTTCAGTAGATCCTCTATCAGAAATATTTCCATCTCGAAACAGAACTTCCTCTTGTGAGTTTCAAGACTTTGTTGCGCCCATTGTTAACACGCGTGAAAAGTTTCGTAGCGACGGGTGTACACCTGAACCAGAACCTGGATGTTCCCGAATTGTTTCCGCTTTAGAGCCAGATATAGCTGCTCAGAGAGGTGACACAGTGGTGCCAGATATTGAAGTAAATACTCGGCAAAATACTAGCTGTGACAACACATCTGATCCTAAACCGGAATGCTCAGCCTCCCATTGCAGTCCCTTGGTGTTAAGACCTATTCCAAATCCTGCCAAACCAATGACCACGCGAAAACGGAAATTACAAAAATCGGAAATATTAACCAGTACCCCGATCAAAGAAGATCAAAAGCATAAATATGAGAAAAATAAAGTTAAGAATATTAATAAAAGACTGAATGATAAGTCAAAAAATGTTCCTAAGAAGATTAATACAAAGACTGACAAAGACAAAAAAACTACTAAAAAGGTTAAACAGCCAAAGAAAATAAAAGAATTTAAGGATATTTTATGCTTTTTTTGCGGTGAAATATATATAGAAGAAGACGGTAAACCAATTGAAAATTGGATTCAATGTGACATTTGTCAACAATGGTGTCACGAAGATTGTTCTGCTTTTGATGGCGCTCTAGGTTATACCTGTGACAATTGCCAATCTTAA

Protein

MSVGLRGVSSSSETMSESTLERNRAEKALITKTPTHTLLKSNIKNYSDRNGNDVTETVHRGRKTFAFWTLVCLLFVLAIGNLILTFTILAVLRLGQGLESMEFLPEHNAIKFFGKTNLENVYKRDGLIESFSDTPMSITSENGSVLFNLQTRLSRSDTKLLMNSSGVFIRGVNSLELISLDSGEAAFSTASPEINIHEPINNLQAKMVNKYKKKTKQGTWDENAMQTAINLCKAGESIKSTAKKYGLAYATLYRHVKTGTVASKLGRFRPVFTEDQEIELVTYLKDMDSVFFGLTRDEFKNLAFIYAKKNNLNYPNNWDKYEKAGDDWLSSFLSRHNQISLRTPEATSVARAKGFNRHEVGRFYENLEALTVKYDIDASRLYNMDETGISTTTNKPPKVLSTKGKKQVGIIASAERGQLTTVIGCCNAAGSFLPPFLIFARKKMQPRLLDGAPPGTQGTCTPNGWTSGEVFLDWMHFFVEHVRPTPEKKILLLLDNHESHKYYPALDYASKNNVVILSLAPHTTHKMQPMDVAVYGPLKTYFEREINFFQKSHPGRIINQYDVARLLSPAFLKSAVAQNAVHGFERPGIWPVNKYAFGDEDYEPAAVFAGMSNMNIGTKSTNSLETIDIPRPSVDTSSTPSPSLLQEQIPSSSVDPLSEIFPSRNRTSSCEFQDFVAPIVNTREKFRSDGCTPEPEPGCSRIVSALEPDIAAQRGDTVVPDIEVNTRQNTSCDNTSDPKPECSASHCSPLVLRPIPNPAKPMTTRKRKLQKSEILTSTPIKEDQKHKYEKNKVKNINKRLNDKSKNVPKKINTKTDKDKKTTKKVKQPKKIKEFKDILCFFCGEIYIEEDGKPIENWIQCDICQQWCHEDCSAFDGALGYTCDNCQS

Uniprot

A0A2A4J0W1 A0A2H1VWF9 A0A212EU96 A0A1W4WFM5 A0A2H1VTA0 H9IUQ1 + More
A0A1B6L3T1 A0A1W4WAP5 A0A2A4J1E0 A0A1W4XA29 A0A2H1VA32 H9JME9 H9JAE4 A0A2A4JQE1 A0A2A4J792 A0A2A4J4D1 A0A2A4K4E0

Pubmed

22118469 19121390

EMBL

NWSH01004485 PCG65052.1 ODYU01004859 SOQ45169.1 AGBW02012433 OWR45073.1 + More
ODYU01004314 SOQ44057.1 BABH01000686 GEBQ01021595 JAT18382.1 NWSH01003711 PCG65895.1 ODYU01001473 SOQ37710.1 BABH01016912 BABH01009206 NWSH01000827 PCG73986.1 NWSH01002570 PCG67955.1 NWSH01003154 PCG66851.1 NWSH01000193 PCG78522.1

Proteomes

UP000218220 UP000007151 UP000192223 UP000005204

PRIDE

H9IUQ1 H9JME9 H9JAE4

Pfam

PF03184   DDE_1        + More
PF05225   HTH_psq
PF03221   HTH_Tnp_Tc5

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR036880   Kunitz_BPTI_sf
IPR009057   Homeobox-like_sf
IPR011011   Znf_FYVE_PHD
IPR004875   DDE_SF_endonuclease_dom
IPR007889   HTH_Psq
IPR001965   Znf_PHD
IPR006600   HTH_CenpB_DNA-bd_dom
IPR019787   Znf_PHD-finger
IPR003599   Ig_sub
IPR036179   Ig-like_dom_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR007110   Ig-like_dom

SUPFAM

SSF46689   SSF46689        + More
SSF57362   SSF57362
SSF57903   SSF57903
SSF48726   SSF48726

Gene 3D

3.30.40.10

ProteinModelPortal

A0A2A4J0W1 A0A2H1VWF9 A0A212EU96 A0A1W4WFM5 A0A2H1VTA0 H9IUQ1 + More
A0A1B6L3T1 A0A1W4WAP5 A0A2A4J1E0 A0A1W4XA29 A0A2H1VA32 H9JME9 H9JAE4 A0A2A4JQE1 A0A2A4J792 A0A2A4J4D1 A0A2A4K4E0

KEGG

101740923 K12566 beta-sarcoglycan | (RefSeq) uncharacterized LOC101740923

GO

GO:0003677 GO:0046872 GO:0004867 GO:0003676 GO:0016021 GO:0005634 GO:0005515 GO:0008270 GO:0016012 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

887

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.31769

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.99876

inside

1 - 69

TMhelix

70 - 92

outside

93 - 887

Pi

164.511912

Theta

175.517227

Tajima's D

0.442778

CLR

0.611643

CSRT

0.500124993750312

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree