SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14624
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.239
 

Sequence

CDS
ATGTTCACGATTGACTTCCACGGTGAAGGAATAACATCGTGCAATAAAAATCAAACCCGCAAAATTATAATTTGCGCAATTACTGGTGCTAGGACCTCTTGTGTCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATAGGTGGCGGGCTGAACTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCACGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTTACGCAGGTGCTCACTGGGCATGGTTGTTTCGGTGAGTTCCTGCACCGGATCACAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGGATACGCTCGTCGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAACCGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA
Protein
MFTIDFHGEGITSCNKNQTRKIIICAITGARTSCVRGYRTISFEAACVLAGTPPWVLEAEALAADYRWRAELRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRITAEPTAECHHCGCDLDTAEDTLVACPAWEGWRRVLVAKIGTDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRAGAREADLAQALAL

Summary

Cofactor
FAD
Similarity
Belongs to the GMC oxidoreductase family.
EMBL
AB126050    BAD86650.1    AB090825    BAC57926.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    KZ149896    PZC78733.1    AB078935    BAC06462.1    LBMM01006538    KMQ90523.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01012027    KMQ86470.1    QOIP01000009    RLU18544.1    LBMM01003679    KMQ93242.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01008861    KMQ88580.1    LBMM01009494    KMQ88097.1    ODYU01009945    SOQ54696.1    ODYU01005282    SOQ45985.1    GL450953    EFN80213.1    LBMM01005733    KMQ91252.1    LBMM01006954    KMQ90166.1    LBMM01024024    KMQ82631.1    QOIP01000010    RLU18098.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01008682    KMQ88705.1    QOIP01000031    RLU14697.1    QOIP01000007    RLU20280.1    LBMM01019838    KMQ83439.1    LBMM01006662    KMQ90413.1    LBMM01019839    KMQ83438.1    LBMM01006110    KMQ90925.1    LBMM01004272    KMQ92618.1    ABLF02006132    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    LBMM01005634    KMQ91349.1    LBMM01006725    KMQ90373.1    GGMR01011974    MBY24593.1    LBMM01002052    KMQ95336.1    LBMM01011877    KMQ86578.1    LBMM01014909    KMQ85000.1    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01015018    KMQ84954.1    LBMM01006640    KMQ90440.1    GEHC01001045    JAV46600.1    LBMM01020849    KMQ83202.1    LBMM01015025    KMQ84953.1    LBMM01004505    KMQ92346.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF00732   GMC_oxred_N
PF17919   RT_RNaseH_2
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF51905   SSF51905       
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
255
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02918
Exp number, first 60 AAs:
0.02695
Total prob of N-in:
0.01156
outside
1  -  255
 
 

Population Genetic Test Statistics

Pi
74.344437
Theta
54.730358
Tajima's D
1.397716
CLR
0.11769
CSRT
0.765161741912904
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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