SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14585  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008750
Annotation
PREDICTED:_PR_domain_zinc_finger_protein_5-like_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr24(+):10830729-10877943      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.381
 

Sequence

CDS
ATGGACGAAATAAGTAATGGCCATGAACCAGCAATAAAAATTGAGTATGTAAATGAAGCAGAGAAAGACTCATCAGAACCAGAACTCACGAGGGATAGTGTGTATGAAGAAGTGGAATTCTTAGATGTTCCTGTTGATGTCAAACCAAAAGAGAAAGTAGACAGAAAAATAATGACCACCGGTCCAACAAAGAGAAAACTTCCAAACAGGCAAGCGAAGAACATTGAAAATAGGTTAACGAAATATGCCATAGGAGACCCAGAGAAGACGATGGTTGTATCGAGAAGCAAAAAAATCTTACGTATAGATACTACAAATCACAATGGGATTTCAAACAAAATCTTAAACGAGAAATTGGATGAAGTTTCAGATAAACAGACTTTGGTGCCAAAAATAGAATTCTTAGAAGTGGAAAGCCAAGAAATCGTTGAAGAAATTAACAAGAATGAAGAAATTGGACTCGAGAAGAAAACATATGATGAAGTGGAGTATTTAGAGGAAGATGTCACAAATAACAGTCAACCAGAGAAAGATCCGATAACAGTCTGCTTAACCCGGCCCAAGAAACTGCCCCGGGCCAAACCCATCAAGAAATACCTTCAATACACCGAGGAGGACCTGAGGAATGGCGTGGAAGCAGTCAGAAACAACAGGATGTCTAGATTAGAAGCGGCCGAGTTCTATAACGTTCCGAGGAAGACTTTAGTTGCCAAACTCAAAATGGACGAGGAGAATGTCCGGGAAGTGGCAACCGTCGACGCCGGTACTAAGATCGGTAAAGGTGAGACGGACGTACGGGCGCGGTACAAAGCGATCGTTCGATGTAAAACACGTAGCGCGCCCGAGAACACATCCGCTCTAGAGATGACAAAGCACAAGGACAACATAAGAATGGTCATGCAACACTCGAATGCGACTCTGATCAGAGACCACCGCGGCGCCGGGTATTCTTGCTGCTTCTGCACGGAACGTTTCCAGACTCCGGCGCTGCTGAAACAGCACAATCTCAATATACACGAAGATGCCGGCCAAAACGCGATCAGGGTTAAATACGTGTCCGATCTCATACTTAAACTGGATGTAACGGGACTCCGGTGCTTAATTTGCGCGGCCAAGATCGAAACCCTTGAAGCGTTCTTGGAACATCTGAGGAAGGACCACAAGAAAACCTTCCACGCTGACGTCAAGTCTCACATGGTTCCGTTCAAATTCGAAGGAGAGGTATTAGAATGTGCGATCTGTAAGAAGCGATTTAAATATTTCAAGCTGCTAGCGGAACATATGAACGATCACTACAGGAACTACGAATGCTCCGTATGCGGACGAGGATTTGTGAACAAGCAAGCTATGCAGCTACATTCATATCGGCACCAGAAAAACGTCGGCGAATTCAAGTGTCCAGATTGCCCGAAAGTATTTGACACGCGGCCTCGTCGAAGTGCTCACGTTAGGCTTGTCCACCGTCACGGCAGGAAGACGAGGCGATGTCATCTCTGCGAAGAGAAGTTCGTATCCGCCCAGCAGGTCCAGAATCATATGGTCAAAACCCACGGAGCCAAGCAGCAAGTGTTCAAGTGCGATGCTTGCGATCGGACGTACACCGTCGCCAGGTCTCTCGACGAGCACAAGAAGCGTTACCATCTGATGCTCCGACCGCACCAGTGTACCCTGTGCGAGATGAGTTTCTACTCCAAGATGGAGCTGAACTCGCACATGGTCACACATACAAAGACTAGGGAGTTTCAGTGCGAGTTGTGCGATAAACGTTTCGGTACTAAATGCTCTCTCAACCAGCACATGAGAGCGCATTACGGTATAAAGCGCTACAAGTGCGACCGTTGCGATGTCAAGTTCGCCGCCAAAAACAAACTAAGGGCTCACTGCTGGAAGAAACACGGCGAGAGCGTAGACCCAGCACGAGAAGAAATGTATGTATTCATAAAGGAAGTAAAAAAAATACTCTCATTCACGAATGCGACGCCCTACAAAAGTAAAATATCGACTTACAGCTGCGCCTATTGCACCGAAGTGTATTTCCACGCGGCGGACGACCTCCGCAACCACACGCGCACGAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACGCGATGAACGAAATCTTAAAGTTGGACGTGAACAATCTCATTTGTGTGGTGTGTTGCATCCCGATGGACGACTGGAATGGTCTATTTAGACATTTAAAAAATACACACGGTGTCGTCTTCACGTACGCGTACAAAAGGGTCATTCCGTATATCTTGGACGAGGAGCCTGACTGCGTGCTCTGCAAGCAACACTTCACGAACTACATTCAGCTGGACTTCCACATGAACAGCCACTACGACAACTACGTCTGTGACGATTGCGGCCAGACCTTTATATCCGCTGCCAGATTAAAGAATCACGCCAAGAATCACTCCAAGAAGCAAGAAGCGGTCGTTCACAAAGCCAGGTTGTACTACAAGTGTTACTACTGCCCGGAGAAACTGCCGAGCGAAAGGGAGAGGAAGGAGCACATCGAAGCAAACCACAGGGAGAAAATTAAGGAGATCGGCTGCGACATGTGCGGCAAGATATTCAATTGGCGGCAGTACTACATCGAGCACTTGAGGAAGGTCCATGGCGACAGGAAATACGAGTGCACAGCTTGCGATAAAAAGTTTTCTCAGAATAGAGATTTGAGGCGGCACGTCGAGTCCAGGCATAACGGCGCCAAGAACCACGTGTGTCCGATGTGCGAAAGGAGATACTCCTCGAAAGCGGCGCTGGGACATACAGAGGTGTACGGCGAAATGTTAACGAAATGCTACGCTTTTTCGTGGATCCAGTTAGACTCTGAAGATTACAATCAAATCTGTGATCCATGCATAAAGAGGCTAAGGGAGTCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAACAACTGATGGACGAGATAAGTAATGGCCATGAATCAACAATAAAAATTGAGTATGTAAATGAAGCAGAGAAAGACTCATCGGAGCCAGAACTCATGAGGGATAGTGTGTATGAAGAAGTGGAATTTTTAGATGATGTTCCTGTTGATGTCAAACCGAAAGAGAATGTAGACAGAAAAAGAATGAGCATCAGTCCAACAAAGAGAAAACTTCCGAACAAACAAGCAAAGAACATTGACAATAGGTTAACAAAATATGTTGTGGGAGACCCAGAGAAGACTATGGATGTGTCGCGAAGTAAAAAAAACTCACGTATAGATACTACAAATCACAATGGGAATTCAAATAGAATGTTGACTGAGGAATTGGATGAGTATTCAGATAAACAGACTTTGGTGCCAAAAATTGAATTCTTAGAAGTGGAAAGCCAAGAAATCGTTGAAGAAATTAACAAGGATGAGGAAATTGGACTCGAGAAGAAAACATATGAAGAAGTGGAGTATTTAGAGGAAGATGTTACAGACAACAGTCAACTAGAGAAAGATCCGATAACAGTTTGCTTAACCCGGAAATGGCCCAAGAAACTACCCCGAGCCGAACGCAACAAGAGGTATCTTCAGTACACCGAGGAGGATCTGAGGAATGGCGTGGAGGCAGTCAGAAACAACAGAATGTCTAGATTAGAAGCGGCTGAATTCTATAACGTTCCGAGGAAGACTTTGGCTGCCAAACTCAAAATGGACGAGGAGAGTGTAGACCCGGCACGAGAAGAGATGTACGTATTCATAAAGGAAATAAAAAAAATACTCTCATTCACGAATGCCACGCCCTACAAAAGTAAAATGTCCACCTACAGCTGCGCCTATTGCACCGAAGTGTATTTCCAAACGGCGGACGACCTCCGCAACCACACGCGCACAAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACGCGATGAACGAAATCTTAAAGTTAGACGTGAAAAACCTCATTTGTGTGCTGCCAAGCGATAGGGAGAGGAAGGAGCATATCGAAGCGAACCACAGGGAGAAAGTTAAGGAGATCAGCTGTGACATGTGCGGCAAGATATTCAATTGGCGGCAGTACTACATCGCGCATCTGAGGAAGGTCCATGGCGACAGGAAATACGAGTGCACAGTTTGCGATAAAAAGTTTTCTCAGAATGGAGATTTGAGTCGGCACGTCGAGTCCAGGCATAACGGCGCCAAGAACCACGTGTGTCCGATGTGCGAAAGGAGATACTCCTCGAAAGCGGCGCTGGTGACGCACTTCAAAATTCATTCGAACAATAACGAAGTTGTCGTTATAAATTACACATAA
Protein
MDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSVYEEVEFLDVPVDVKPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDEVSDKQTLVPKIEFLEVESQEIVEEINKNEEIGLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKKLPRAKPIKKYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLVAKLKMDEENVREVATVDAGTKIGKGETDVRARYKAIVRCKTRSAPENTSALEMTKHKDNIRMVMQHSNATLIRDHRGAGYSCCFCTERFQTPALLKQHNLNIHEDAGQNAIRVKYVSDLILKLDVTGLRCLICAAKIETLEAFLEHLRKDHKKTFHADVKSHMVPFKFEGEVLECAICKKRFKYFKLLAEHMNDHYRNYECSVCGRGFVNKQAMQLHSYRHQKNVGEFKCPDCPKVFDTRPRRSAHVRLVHRHGRKTRRCHLCEEKFVSAQQVQNHMVKTHGAKQQVFKCDACDRTYTVARSLDEHKKRYHLMLRPHQCTLCEMSFYSKMELNSHMVTHTKTREFQCELCDKRFGTKCSLNQHMRAHYGIKRYKCDRCDVKFAAKNKLRAHCWKKHGESVDPAREEMYVFIKEVKKILSFTNATPYKSKISTYSCAYCTEVYFHAADDLRNHTRTNHIDERTKKVDLMMRPHAMNEILKLDVNNLICVVCCIPMDDWNGLFRHLKNTHGVVFTYAYKRVIPYILDEEPDCVLCKQHFTNYIQLDFHMNSHYDNYVCDDCGQTFISAARLKNHAKNHSKKQEAVVHKARLYYKCYYCPEKLPSERERKEHIEANHREKIKEIGCDMCGKIFNWRQYYIEHLRKVHGDRKYECTACDKKFSQNRDLRRHVESRHNGAKNHVCPMCERRYSSKAALGHTEVYGEMLTKCYAFSWIQLDSEDYNQICDPCIKRLRESCSFRNLVIRSQKQLMDEISNGHESTIKIEYVNEAEKDSSEPELMRDSVYEEVEFLDDVPVDVKPKENVDRKRMSISPTKRKLPNKQAKNIDNRLTKYVVGDPEKTMDVSRSKKNSRIDTTNHNGNSNRMLTEELDEYSDKQTLVPKIEFLEVESQEIVEEINKDEEIGLEKKTYEEVEYLEEDVTDNSQLEKDPITVCLTRKWPKKLPRAERNKRYLQYTEEDLRNGVEAVRNNRMSRLEAAEFYNVPRKTLAAKLKMDEESVDPAREEMYVFIKEIKKILSFTNATPYKSKMSTYSCAYCTEVYFQTADDLRNHTRTNHIDERTKKVDLMMRPHAMNEILKLDVKNLICVLPSDRERKEHIEANHREKVKEISCDMCGKIFNWRQYYIAHLRKVHGDRKYECTVCDKKFSQNGDLSRHVESRHNGAKNHVCPMCERRYSSKAALVTHFKIHSNNNEVVVINYT

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5V3M     E-value=2.22383e-20,     Score=249

Ontologies

KEGG
101738572    K22534 PR domain zinc finger protein 5 | (RefSeq) PR domain zinc finger protein 5-like
GO
GO:0046872   GO:0005634   GO:0008270   GO:0003676   GO:0003677   GO:0006101   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Topology

Length:
1433
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1433
 
 

Population Genetic Test Statistics

Pi
215.674552
Theta
181.495523
Tajima's D
1.111376
CLR
0.188471
CSRT
0.692265386730664
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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