SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14583
Pre Gene Modal
BGIBMGA008785
Annotation
putative_zinc_finger_protein_84_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 3.744
 

Sequence

CDS
ATGAAAGAGTATTACCACGACGGTATACGAGAGGTTTACTTCGATCTATTCATGGAATGTTTCAACATGTTTTTGTCGACAAACGAAAAGCTAACAACATTAATATGCAAATCATGTATTACAAAGCTAAGACATGCAAGCAGTTTCAAGTTAATGGCTGAGAATACAGAGAAGCAGCTACTAGACGAATTGGTACTCAGAGATGACAAGAATACCGTGTTTGTTAATGTGCCGGTAGAAGACGCAATCTTAGATGATGATCTAATAATAAAAGCTGAAGAGCTGACAGAGGTTAAAGAGGAACCACCAGACTCTGAACCTATGGAAACTGACTTTGATACCGATTATATTGACAATGACAGTGATGTAACAACGAAAAACCATTCGGACACGGAGAAAATGGTGAAAGGCGAATCCGAATTGTTGGCTCGCTTCGATCGAACCGAATTGAAGATGTTGCCAACTAGGAGGGCGCTGCGAGATCTGTGCCCCAACTACGTCAGACACTTGGAGCTGCTGAAAGGTATAGAAGTCGTACCGAGAATGGTGAGGAAGTTACTACAGGAGAACACCAGATTAACGAACAGCAAAAGAGTATACGTAACGGAGAAGGTGGCGCAGATCGTGAACTCGTCGACGCTACTGGAAAATTCCAATATGACCCCGTTCAGGAGTAGGGCCCGTAACGGCTACCCCTGTTTCTATTGCAGAAACACTGTAACAGATTTAAATATCAGCTGA
Protein
MKEYYHDGIREVYFDLFMECFNMFLSTNEKLTTLICKSCITKLRHASSFKLMAENTEKQLLDELVLRDDKNTVFVNVPVEDAILDDDLIIKAEELTEVKEEPPDSEPMETDFDTDYIDNDSDVTTKNHSDTEKMVKGESELLARFDRTELKMLPTRRALRDLCPNYVRHLELLKGIEVVPRMVRKLLQENTRLTNSKRVYVTEKVAQIVNSSTLLENSNMTPFRSRARNGYPCFYCRNTVTDLNIS

Summary

Pfam
PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05225   HTH_psq
PF12756   zf-C2H2_2
PF01391   Collagen
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
IPR009057   Homeobox-like_sf       
IPR007889   HTH_Psq       
IPR003656   Znf_BED       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
IPR008160   Collagen       
SUPFAM
SSF57667   SSF57667        + More
SSF46689   SSF46689       

Ontologies

Topology

Length:
246
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01303
Exp number, first 60 AAs:
0.01292
Total prob of N-in:
0.14182
outside
1  -  246
 
 

Population Genetic Test Statistics

Pi
231.721074
Theta
169.560088
Tajima's D
1.62888
CLR
0.000011
CSRT
0.814109294535273
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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