SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14564
Annotation
Yokozuna_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.318
 

Sequence

CDS
ATGATACTTAGTGTTTTTGTCAAAAAAAAATTGGCAGGGAAAAAACTCCATCCAAAACATCCGCTTGTGCAAAGCATATGCGGTATAGTCCTCCGGCCCGGGAGACATTTTGAAAATTTCATTTTGGCCCGCGCTTTAAAGTATTTGCCCACCCCTGGTTTAGAATATACATTACCGTACACGCCACAACTTAATGGCATATCAGAACGGATGAACCGCACATTATGCGACAAAACGAGGACGCTATTAGCGGAAACCAAATTGCCAAAACATCTGCGGTGCGAAGCGATACAATGTGCAGTTTACCAATTAAACAGATCGCCATCATGGGCCATATGCCACATGACACCCAGCGAAATATTTATTGGTAAAAACGACCTATCGAGATTGAGAGTATTTGGTTCCAAAGCTTGGGCTACTATAGTACCCAAACCGGATAAATTAGCCAAGAGAGCAAAAGAAACAAGAATGGTAGGTTTTGCAACTGTTGGTTACAGATTATGGGATCCAGAAGAAGATAAAATAGTTATTTCCAGAGATGTAAGATTTGATGAAAGCGACATTAAAGTCAAAAATAACGAACAAGTGAAACAAGTAAGGTATATTCAAGACCAAGAAGAAGAAATCAATACAGAAAAGGAAGATATTGTAGAAAAGGAAGATGAATTTAAAGATGCAGAAATGAACACTGATCAAACTGAAGAAGCAACAATCAGACCCAAAAGAACGATAAAATCTCCTACTTATCTTAAAGATTACGAGGCGAATATAGAAAACATAAATGAACATTGTTATATGTTTGAGTGCAAATGCTCCAGAAACTTTGGAATAAGCTGTAAAAGAACCAGAATGGAAAAACGTAATCAATAA
Protein
MILSVFVKKKLAGKKLHPKHPLVQSICGIVLRPGRHFENFILARALKYLPTPGLEYTLPYTPQLNGISERMNRTLCDKTRTLLAETKLPKHLRCEAIQCAVYQLNRSPSWAICHMTPSEIFIGKNDLSRLRVFGSKAWATIVPKPDKLAKRAKETRMVGFATVGYRLWDPEEDKIVISRDVRFDESDIKVKNNEQVKQVRYIQDQEEEINTEKEDIVEKEDEFKDAEMNTDQTEEATIRPKRTIKSPTYLKDYEANIENINEHCYMFECKCSRNFGISCKRTRMEKRNQ

Summary

EMBL
GBHO01027564    JAG16040.1    GBHO01009621    JAG33983.1    GBHO01009623    JAG33981.1    + More
GBHO01034731    JAG08873.1    GDHC01015802    JAQ02827.1    GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GBHO01002616    JAG40988.1    GBHO01034936    JAG08668.1    GBHO01035173    JAG08431.1    NEVH01013252    PNF29308.1    GBHO01002761    JAG40843.1    GEHC01000966    JAV46679.1    LJIG01022881    KRT78250.1    GEZM01072005    JAV65635.1    GBHO01040573    JAG03031.1    GBHO01040574    JAG03030.1    GDHC01007058    JAQ11571.1    GBHO01013843    JAG29761.1    GECL01003258    JAP02866.1    GEZM01028916    JAV86195.1    JAV86196.1    PDCK01000044    PRQ23286.1    NKQK01000002    PSS35035.1    GEZM01009498    GEZM01009497    JAV94551.1    GEZM01009496    GEZM01009495    JAV94560.1    AC134048    DP000010    AAX92941.1    ABA91548.1    AP008217    BAF27642.2    NEVH01024532    PNF16926.1    GECZ01025604    JAS44165.1    GGMR01018348    MBY30967.1    ABLF02003343    ABLF02041793    GBHO01004301    JAG39303.1    JXUM01118474    KQ566190    KXJ70335.1    KQ258279    KOM25686.1    OIVN01002656    SPD05381.1    ABLF02002130    ABLF02010475    ABLF02010476    ABLF02041792    OIVN01006261    SPD29147.1    AC129717    AAT85194.1    OIVN01006387    SPD32065.1    OIVN01002516    SPD04274.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01002055    SPD00174.1    OIVN01000521    SPC81512.1    OIVN01003683    SPD12935.1    GEHC01000878    JAV46767.1    GBBI01004033    JAC14679.1    KQ484038    KYP38095.1    LBMM01017629    KMQ84016.1    AC130605    AAT44282.1    FJ544851    ACL97383.1    GBHO01015876    JAG27728.1    FJ544853    ACL97384.1    GEHC01000959    JAV46686.1    CM003610    KYP61570.1    AC092749    AC112514    AAM08562.1    AAM10749.1    FJ544856    ACL97386.1    AC145366    AAX96781.1    ABA92543.1    FJ544854    ACL97385.1    JXUM01244080    KQ636179    KXJ62430.1    CR854994    CAH65740.1    JXUM01136904    KQ568499    KXJ68982.1   
Pfam
PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF03159   XRN_N
PF17846   XRN_M
PF13961   DUF4219
PF17921   Integrase_H2C2
PF16495   SWIRM-assoc_1
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF00626   Gelsolin
PF08033   Sec23_BS
PF08534   Redoxin
PF00106   adh_short
PF14244   Retrotran_gag_3
Interpro
IPR036397   RNaseH_sf        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR025724   GAG-pre-integrase_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR004859   Put_53exo       
IPR041412   Xrn1_helical       
IPR027073   5_3_exoribonuclease       
IPR025314   DUF4219       
IPR041588   Integrase_H2C2       
IPR032451   SMARCC_C       
IPR000477   RT_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR007123   Gelsolin-like_dom       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR036180   Gelsolin-like_dom_sf       
IPR012990   Sec23_24_beta_S       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       
IPR029472   Copia-like_N       
SUPFAM
SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF82754   SSF82754       
SSF51735   SSF51735       
SSF52833   SSF52833       
Gene 3D

Ontologies

Topology

Length:
289
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0037
Exp number, first 60 AAs:
0.0033
Total prob of N-in:
0.10358
outside
1  -  289
 
 

Population Genetic Test Statistics

Pi
567.053452
Theta
232.245635
Tajima's D
4.531856
CLR
0.20998
CSRT
0.999950002499875
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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