Gene

KWMTBOMO14564

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr24(+):10293909-10294928      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.318

CDS

ATGATACTTAGTGTTTTTGTCAAAAAAAAATTGGCAGGGAAAAAACTCCATCCAAAACATCCGCTTGTGCAAAGCATATGCGGTATAGTCCTCCGGCCCGGGAGACATTTTGAAAATTTCATTTTGGCCCGCGCTTTAAAGTATTTGCCCACCCCTGGTTTAGAATATACATTACCGTACACGCCACAACTTAATGGCATATCAGAACGGATGAACCGCACATTATGCGACAAAACGAGGACGCTATTAGCGGAAACCAAATTGCCAAAACATCTGCGGTGCGAAGCGATACAATGTGCAGTTTACCAATTAAACAGATCGCCATCATGGGCCATATGCCACATGACACCCAGCGAAATATTTATTGGTAAAAACGACCTATCGAGATTGAGAGTATTTGGTTCCAAAGCTTGGGCTACTATAGTACCCAAACCGGATAAATTAGCCAAGAGAGCAAAAGAAACAAGAATGGTAGGTTTTGCAACTGTTGGTTACAGATTATGGGATCCAGAAGAAGATAAAATAGTTATTTCCAGAGATGTAAGATTTGATGAAAGCGACATTAAAGTCAAAAATAACGAACAAGTGAAACAAGTAAGGTATATTCAAGACCAAGAAGAAGAAATCAATACAGAAAAGGAAGATATTGTAGAAAAGGAAGATGAATTTAAAGATGCAGAAATGAACACTGATCAAACTGAAGAAGCAACAATCAGACCCAAAAGAACGATAAAATCTCCTACTTATCTTAAAGATTACGAGGCGAATATAGAAAACATAAATGAACATTGTTATATGTTTGAGTGCAAATGCTCCAGAAACTTTGGAATAAGCTGTAAAAGAACCAGAATGGAAAAACGTAATCAATAA

Protein

MILSVFVKKKLAGKKLHPKHPLVQSICGIVLRPGRHFENFILARALKYLPTPGLEYTLPYTPQLNGISERMNRTLCDKTRTLLAETKLPKHLRCEAIQCAVYQLNRSPSWAICHMTPSEIFIGKNDLSRLRVFGSKAWATIVPKPDKLAKRAKETRMVGFATVGYRLWDPEEDKIVISRDVRFDESDIKVKNNEQVKQVRYIQDQEEEINTEKEDIVEKEDEFKDAEMNTDQTEEATIRPKRTIKSPTYLKDYEANIENINEHCYMFECKCSRNFGISCKRTRMEKRNQ

Uniprot

A0A0A9XG27   A0A0A9YSA9   A0A0A9YQT1   A0A0A9WQU6   A0A146L6N5   A0A0A9Z0I6   + More
A0A146KTS1   A0A0A9ZCB8   A0A0A9WQA3   A0A0A9WLY1   A0A2J7QL79   A0A0A9ZBW6   A0A1W7R685   A0A0T6AT79   A0A1Y1L115   A0A0A9W6J9   A0A0A9WDS7   A0A146LV28   A0A0A9YDN6   A0A0V0G477   A0A1Y1MP14   A0A1Y1MQF0   A0A2P6PN01   A0A2R6RYD4   A0A1Y1N9F7   A0A1Y1NCE2   Q53ND1   Q0IUH3   A0A2J7PKR8   A0A1B6F1U1   A0A2S2PNK0   J9LXN4   A0A0A9Z7G7   A0A182H8F8   A0A0L9T5R0   A0A2N9H171   J9M5U1   A0A2N9IUS6   Q6AUC7   A0A2N9J635   A0A2N9GY85   A0A2N9FMR2   A0A2N9GLP2   A0A2N9F319   A0A2N9HLU0   A0A1W7R6I5   A0A023F102   A0A151R6U8   A0A0J7K1E5   Q6L4V3   B8YLY3   A0A0A9Y9G0   B8YLY4   A0A1W7R6A3   A0A151T3F7   Q8RUQ2   B8YLY6   Q53L15   B8YLY5   A0A182GHP7   Q01N60   A0A182G1G7  

Pubmed

25401762    26823975    28004739    29661190    16188032    16100779    + More
16381971    26483478    26460024    25474469    22057054    19656907    12447439   

EMBL

GBHO01027564    JAG16040.1    GBHO01009621    JAG33983.1    GBHO01009623    JAG33981.1    + More
GBHO01034731    JAG08873.1    GDHC01015802    JAQ02827.1    GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GBHO01002616    JAG40988.1    GBHO01034936    JAG08668.1    GBHO01035173    JAG08431.1    NEVH01013252    PNF29308.1    GBHO01002761    JAG40843.1    GEHC01000966    JAV46679.1    LJIG01022881    KRT78250.1    GEZM01072005    JAV65635.1    GBHO01040573    JAG03031.1    GBHO01040574    JAG03030.1    GDHC01007058    JAQ11571.1    GBHO01013843    JAG29761.1    GECL01003258    JAP02866.1    GEZM01028916    JAV86195.1    JAV86196.1    PDCK01000044    PRQ23286.1    NKQK01000002    PSS35035.1    GEZM01009498    GEZM01009497    JAV94551.1    GEZM01009496    GEZM01009495    JAV94560.1    AC134048    DP000010    AAX92941.1    ABA91548.1    AP008217    BAF27642.2    NEVH01024532    PNF16926.1    GECZ01025604    JAS44165.1    GGMR01018348    MBY30967.1    ABLF02003343    ABLF02041793    GBHO01004301    JAG39303.1    JXUM01118474    KQ566190    KXJ70335.1    KQ258279    KOM25686.1    OIVN01002656    SPD05381.1    ABLF02002130    ABLF02010475    ABLF02010476    ABLF02041792    OIVN01006261    SPD29147.1    AC129717    AAT85194.1    OIVN01006387    SPD32065.1    OIVN01002516    SPD04274.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01002055    SPD00174.1    OIVN01000521    SPC81512.1    OIVN01003683    SPD12935.1    GEHC01000878    JAV46767.1    GBBI01004033    JAC14679.1    KQ484038    KYP38095.1    LBMM01017629    KMQ84016.1    AC130605    AAT44282.1    FJ544851    ACL97383.1    GBHO01015876    JAG27728.1    FJ544853    ACL97384.1    GEHC01000959    JAV46686.1    CM003610    KYP61570.1    AC092749    AC112514    AAM08562.1    AAM10749.1    FJ544856    ACL97386.1    AC145366    AAX96781.1    ABA92543.1    FJ544854    ACL97385.1    JXUM01244080    KQ636179    KXJ62430.1    CR854994    CAH65740.1    JXUM01136904    KQ568499    KXJ68982.1   

Proteomes

UP000235965    UP000238479    UP000241394    UP000007819    UP000069940    UP000249989    + More
UP000053144    UP000075243    UP000036403   

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF03159   XRN_N
PF17846   XRN_M
PF13961   DUF4219
PF17921   Integrase_H2C2
PF16495   SWIRM-assoc_1
PF14529   Exo_endo_phos_2
PF00078   RVT_1
PF00626   Gelsolin
PF08033   Sec23_BS
PF08534   Redoxin
PF00106   adh_short
PF14244   Retrotran_gag_3

Interpro

IPR036397   RNaseH_sf        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR025724   GAG-pre-integrase_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR004859   Put_53exo       
IPR041412   Xrn1_helical       
IPR027073   5_3_exoribonuclease       
IPR025314   DUF4219       
IPR041588   Integrase_H2C2       
IPR032451   SMARCC_C       
IPR000477   RT_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR007123   Gelsolin-like_dom       
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR036180   Gelsolin-like_dom_sf       
IPR012990   Sec23_24_beta_S       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       
IPR029472   Copia-like_N       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF82754   SSF82754       
SSF51735   SSF51735       
SSF52833   SSF52833       

Gene 3D

3.30.420.10     2.40.70.10     3.60.10.10     3.40.20.10    

CDD

cd03013  PRX5_like

ProteinModelPortal

A0A0A9XG27   A0A0A9YSA9   A0A0A9YQT1   A0A0A9WQU6   A0A146L6N5   A0A0A9Z0I6   + More
A0A146KTS1   A0A0A9ZCB8   A0A0A9WQA3   A0A0A9WLY1   A0A2J7QL79   A0A0A9ZBW6   A0A1W7R685   A0A0T6AT79   A0A1Y1L115   A0A0A9W6J9   A0A0A9WDS7   A0A146LV28   A0A0A9YDN6   A0A0V0G477   A0A1Y1MP14   A0A1Y1MQF0   A0A2P6PN01   A0A2R6RYD4   A0A1Y1N9F7   A0A1Y1NCE2   Q53ND1   Q0IUH3   A0A2J7PKR8   A0A1B6F1U1   A0A2S2PNK0   J9LXN4   A0A0A9Z7G7   A0A182H8F8   A0A0L9T5R0   A0A2N9H171   J9M5U1   A0A2N9IUS6   Q6AUC7   A0A2N9J635   A0A2N9GY85   A0A2N9FMR2   A0A2N9GLP2   A0A2N9F319   A0A2N9HLU0   A0A1W7R6I5   A0A023F102   A0A151R6U8   A0A0J7K1E5   Q6L4V3   B8YLY3   A0A0A9Y9G0   B8YLY4   A0A1W7R6A3   A0A151T3F7   Q8RUQ2   B8YLY6   Q53L15   B8YLY5   A0A182GHP7   Q01N60   A0A182G1G7  

KEGG

102464564    no KO assigned | (RefSeq) Mir3307, bmo-mir-3307; microRNA 3307

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0003964   GO:0004519   GO:0004527   GO:0016491   GO:0016021   GO:0006085   GO:0006101   GO:0003824   GO:0008152   GO:0015930  

PANTHER

PTHR11439   PTHR12341  

Length:

289

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0037

Exp number, first 60 AAs:

0.0033

Total prob of N-in:

0.10358

outside

1  -  289

 

 

Pi

567.053452

Theta

232.245635

Tajima's D

4.531856

CLR

0.20998

CSRT

0.999950002499875

Interpretation

Uncertain