Gene

KWMTBOMO14558

Annotation

retroelement_polyprotein_[Glyptapanteles_flavicoxis]

Location

Bomo_Chr24(+):10199559-10200773      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.157 Peroxisomal   Reliability : 1.094

CDS

ATGTGTGTAGACTACCGAGAGTTAAATAGGAATACCGTCAGGGACCATTATGCCTTACCGATAATCTCAGACCAAATAGACCAACTGGCCGGGGGTATTTATTTCACCACAATTGACATGGCAGCTGGGTTTCATCAGATACCTATTTCGGAGGGATCAATTGAAAAGACTGCTTTTGTAACTCCCGATGGTTTATATGAATACCTAACTATGCCATTTGGACTTTGCAACGCGGTGTCAGTCTACCAGCGCTGCATTAATAGGGCTCTCGCTCACCTCACGAGCTCACCAGACCAAGTGAGCCAGGTCTATGTCGATGATGTGCTCTCAAAGTGTAAAGATTTTGATCAGGGCTTATACCATATTGAACGCATATTGATTGCTCTACAAGAAGCTGGCTTTTCTATTAACGTTGATAAAACCGCCTTCTTTAAACGCTCCATCGAGTACTTGGGCAATATAATTGCAGACGGGCAGGTCAGCCCTAGCCCAAGAAAGGTGGAGGCTTTAACGAAGGCACCAATCCCGAAAACTGTCAAACAAGTTAGACAATTCAATGGCCTGGCTGGATATTTCAGACGTTTCATTCCCAACTTCTCGCGAGTTATGGCTCCTTTATATGAACTCACTAAGAACGATACGACACGGGAATGGAACGAAAGGCATGACGAAGCTAGGGATTATATTGTCAAACATCTGTCTACTGCGCCTACCCTTACGCTATTCCAGGAAGACGCACCCATCGAACTCTACACGGACGCCAGCAGCATCGGCTACGGGGCAGTGTTAGTGCAGACATTCGCGGGTCGCCAACATCCAGTCGCGTACATGAGCCAGCGCACCACCGACGCCGAGAGCCGCTACCACTCTTACGAACTTGAAACGTTGGCGGTCGTAAGAGCAATTAAGCATTTTCGGCATTACCTCTACGGCCGAAAATTCAAGGTAATAACCGACTGTAATGCTCTCAAGGCCTCCAAAAACAAAAAGGACTTGCTTCCGCGAATCCATCGGTGGTGGGCGTTTTTGCAAAACTACGAATTCGAGGTGGAGTATAGGAAAGGTGAGCGATTACAGCACGCACTTTTTCAGTAG

Protein

MCVDYRELNRNTVRDHYALPIISDQIDQLAGGIYFTTIDMAAGFHQIPISEGSIEKTAFVTPDGLYEYLTMPFGLCNAVSVYQRCINRALAHLTSSPDQVSQVYVDDVLSKCKDFDQGLYHIERILIALQEAGFSINVDKTAFFKRSIEYLGNIIADGQVSPSPRKVEALTKAPIPKTVKQVRQFNGLAGYFRRFIPNFSRVMAPLYELTKNDTTREWNERHDEARDYIVKHLSTAPTLTLFQEDAPIELYTDASSIGYGAVLVQTFAGRQHPVAYMSQRTTDAESRYHSYELETLAVVRAIKHFRHYLYGRKFKVITDCNALKASKNKKDLLPRIHRWWAFLQNYEFEVEYRKGERLQHALFQ

Uniprot

A0A0A9WYE4   A0A146L2V0   A0A0A9W4E8   B7S8P8   A0A0A9WUU5   A0A0A9WTW7   + More
A0A0A9Z954   A0A3S2L135   A0A146M2J2   A0A0A9X1Z8   A0A0A9WJJ8   V5GN60   A0A1Y1NG42   A0A1Y1NAV9   D2A5M1   A0A1E1VY25   Q24310   A0A0J7KEC9   A0A1Y1KFN9   A0A1Y1KFM9   A0A139WIB9   A0A0A9ZIH0   A0A0A9WB80   A0A0A9WGV0   A0A1E1W482   A0A0A9XL77   V5H1P2   A0A0A9YZ15   A0A0C9RXL6   A0A0A9ZDJ9   A0A139WJA1   A0A139WIQ0   A0A139WA12   A0A139WJA0   A0A139WIZ4   A0A2S2PFS2   A0A146KXF1   A0A1Y1NEJ5   A0A2S2R3T0   A0A2S2QVZ0   A0A2S2P032   A0A0J7KVJ0   A0A194R1L3   X1X5H2   A0A2W1BPU0   A0A146LDG4   X1XU22   A0A2L2Y402   A0A2L2Y1Z9   A0A2L2Y1I8   X1WPP0   A0A146KYH2   A0A2W1BA98   A0A1W7R6G2   A0A2S2PGQ9   A0A0A9YM49   J9JJ45   A0A147BLC5   J9JZ77   A0A164MP09   A0A1Y1LN89   A0A0A1XB16   X1XM84   A0A0A9YEP8   A0A023EY26   J9KKW9   J9JN68   A0A0J7K890   X1XD76   A0A2S2PMX3   A0A0J7NF11   A0A2S2NKJ2   J9K544   X1X261   A0A2H8TRV6   A0A0J7K9X8   A0A0J7KLK4   J9LBS9   A0A0A9XJ85   A0A1Z5L674   Q94885   X1XU14   A0A293LZX6   A0A023EZG2   A0A023EYH9   A0A023F013   A0A023EYF0   A0A1Y1MFA9   A0A0P6D622   A0A2S2NFQ4   A0A162R894   A0A164P0I2   A0A1Y1MFE0   A0A1Z5KVF1   A0A139W8S4   A0A162SB45   A0A1W7R6L8   A0A1W7R6G1   A0A0P5JUZ2  

Pubmed

25401762    26823975    28004739    18362917    19820115    2464689    + More
26354079    28756777    26561354    29652888    25830018    25474469    28528879    3007285    8535278   

EMBL

GBHO01040014    GBHO01031163    JAG03590.1    JAG12441.1    GDHC01016400    JAQ02229.1    + More
GBHO01041313    JAG02291.1    EF710649    ACE75273.1    GBHO01032413    JAG11191.1    GBHO01032415    JAG11189.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    RSAL01000274    RVE43148.1    GDHC01004980    JAQ13649.1    GBHO01030786    JAG12818.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    GALX01002922    JAB65544.1    GEZM01007614    GEZM01007613    GEZM01007612    JAV95056.1    GEZM01007616    GEZM01007615    GEZM01007611    JAV95051.1    KQ971345    EFA05054.2    GDQN01011434    JAT79620.1    X14037    CAA32198.1    LBMM01008871    KMQ88569.1    GEZM01089268    GEZM01089261    JAV57577.1    GEZM01089269    GEZM01089265    JAV57567.1    KQ971339    KYB27733.1    GBHO01041187    GBHO01040948    GBHO01039116    GBHO01000859    JAG02417.1    JAG02656.1    JAG04488.1    JAG42745.1    GBHO01041099    GBHO01037897    JAG02505.1    JAG05707.1    GBHO01037851    JAG05753.1    GDQN01009269    JAT81785.1    GBHO01043544    GBHO01031946    GBHO01031931    GBHO01022910    GBHO01022909    GBHO01015498    GBHO01001135    GBHO01001106    JAG00060.1    JAG11658.1    JAG11673.1    JAG20694.1    JAG20695.1    JAG28106.1    JAG42469.1    JAG42498.1    GALX01001723    JAB66743.1    GBHO01022918    GBHO01006165    GBHO01006163    GBHO01001110    JAG20686.1    JAG37439.1    JAG37441.1    JAG42494.1    GBYB01013920    JAG83687.1    GBHO01041008    GBHO01006162    GBHO01001134    GBHO01001105    JAG02596.1    JAG37442.1    JAG42470.1    JAG42499.1    KQ971338    KYB27887.1    KYB27888.1    KQ971701    KYB24754.1    KYB27885.1    KYB27886.1    GGMR01015682    MBY28301.1    GDHC01018907    JAP99721.1    GEZM01005427    JAV96179.1    GGMS01015422    MBY84625.1    GGMS01012726    MBY81929.1    GGMR01009949    MBY22568.1    LBMM01002816    KMQ94326.1    KQ460883    KPJ11409.1    ABLF02004401    ABLF02013544    ABLF02013550    KZ149989    PZC75624.1    GDHC01012341    JAQ06288.1    ABLF02017401    IAAA01004057    LAA02040.1    IAAA01004056    LAA02037.1    IAAA01004058    LAA02042.1    ABLF02033943    ABLF02042737    GDHC01018562    JAQ00067.1    KZ150428    PZC70914.1    GEHC01000888    JAV46757.1    GGMR01016004    MBY28623.1    GBHO01011083    GBHO01009497    JAG32521.1    JAG34107.1    ABLF02008401    ABLF02008404    GEGO01004299    JAR91105.1    ABLF02014660    ABLF02042774    LRGB01002992    KZS05228.1    GEZM01051217    GEZM01051215    JAV75083.1    GBXI01005773    JAD08519.1    ABLF02004526    ABLF02054969    GBHO01015604    JAG28000.1    GBBI01004477    JAC14235.1    ABLF02013955    ABLF02009677    ABLF02021755    ABLF02021756    ABLF02021757    ABLF02021758    ABLF02021759    ABLF02021760    ABLF02022031    ABLF02041876    LBMM01011782    KMQ86633.1    ABLF02022032    GGMR01018192    MBY30811.1    LBMM01005919    KMQ91095.1    GGMR01005091    MBY17710.1    ABLF02023666    ABLF02005127    ABLF02005129    ABLF02007401    GFXV01005120    MBW16925.1    LBMM01010976    KMQ87102.1    KMQ91096.1    GBHO01026469    JAG17135.1    GFJQ02004121    JAW02849.1    X95908    CAA65152.1    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GFWV01007660    MAA32390.1    GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    GBBI01004613    JAC14099.1    GBBI01004549    JAC14163.1    GEZM01033083    JAV84424.1    GDIP01005668    JAM98047.1    GGMR01003388    MBY16007.1    LRGB01000231    KZS20305.1    LRGB01002748    KZS06406.1    GEZM01034557    JAV83728.1    GFJQ02008169    JAV98800.1    KQ973017    KXZ75691.1    LRGB01000072    KZS21146.1    GEHC01000930    JAV46715.1    GEHC01000891    JAV46754.1    GDIQ01198582    JAK53143.1   

Proteomes

UP000283053    UP000007266    UP000036403    UP000053240    UP000007819    UP000076858    + More

PRIDE

Q24310    Q94885   

Pfam

PF00078   RVT_1        + More
PF17917   RT_RNaseH
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00665   rve
PF00098   zf-CCHC
PF00077   RVP
PF14392   zf-CCHC_4
PF03732   Retrotrans_gag
PF13873   Myb_DNA-bind_5
PF02145   Rap_GAP
PF02037   SAP
PF16064   DUF4806
PF09668   Asp_protease

Interpro

IPR041373   RT_RNaseH        + More
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036397   RNaseH_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR034122   Retropepsin-like_bacterial       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR005162   Retrotrans_gag_dom       
IPR028002   Myb_DNA-bind_5       
IPR000331   Rap_GAP_dom       
IPR035974   Rap/Ran-GAP_sf       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR032071   DUF4806       
IPR019103   Peptidase_aspartic_DDI1-type       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF111347   SSF111347       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     3.40.50.11210     1.10.720.30    

CDD

cd05483  retropepsin_like_bacteria

ProteinModelPortal

A0A0A9WYE4   A0A146L2V0   A0A0A9W4E8   B7S8P8   A0A0A9WUU5   A0A0A9WTW7   + More
A0A0A9Z954   A0A3S2L135   A0A146M2J2   A0A0A9X1Z8   A0A0A9WJJ8   V5GN60   A0A1Y1NG42   A0A1Y1NAV9   D2A5M1   A0A1E1VY25   Q24310   A0A0J7KEC9   A0A1Y1KFN9   A0A1Y1KFM9   A0A139WIB9   A0A0A9ZIH0   A0A0A9WB80   A0A0A9WGV0   A0A1E1W482   A0A0A9XL77   V5H1P2   A0A0A9YZ15   A0A0C9RXL6   A0A0A9ZDJ9   A0A139WJA1   A0A139WIQ0   A0A139WA12   A0A139WJA0   A0A139WIZ4   A0A2S2PFS2   A0A146KXF1   A0A1Y1NEJ5   A0A2S2R3T0   A0A2S2QVZ0   A0A2S2P032   A0A0J7KVJ0   A0A194R1L3   X1X5H2   A0A2W1BPU0   A0A146LDG4   X1XU22   A0A2L2Y402   A0A2L2Y1Z9   A0A2L2Y1I8   X1WPP0   A0A146KYH2   A0A2W1BA98   A0A1W7R6G2   A0A2S2PGQ9   A0A0A9YM49   J9JJ45   A0A147BLC5   J9JZ77   A0A164MP09   A0A1Y1LN89   A0A0A1XB16   X1XM84   A0A0A9YEP8   A0A023EY26   J9KKW9   J9JN68   A0A0J7K890   X1XD76   A0A2S2PMX3   A0A0J7NF11   A0A2S2NKJ2   J9K544   X1X261   A0A2H8TRV6   A0A0J7K9X8   A0A0J7KLK4   J9LBS9   A0A0A9XJ85   A0A1Z5L674   Q94885   X1XU14   A0A293LZX6   A0A023EZG2   A0A023EYH9   A0A023F013   A0A023EYF0   A0A1Y1MFA9   A0A0P6D622   A0A2S2NFQ4   A0A162R894   A0A164P0I2   A0A1Y1MFE0   A0A1Z5KVF1   A0A139W8S4   A0A162SB45   A0A1W7R6L8   A0A1W7R6G1   A0A0P5JUZ2  

PDB

4OL8     E-value=5.36618e-59,     Score=576

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0015074   GO:0004190   GO:0005634   GO:0008233   GO:0003964   GO:0008168   GO:0005096   GO:0051056  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23388

Exp number, first 60 AAs:

0.12524

Total prob of N-in:

0.05112

outside

1  -  364

 

 

Pi

169.43453

Theta

74.850642

Tajima's D

2.584294

CLR

0.196249

CSRT

0.953452327383631

Interpretation

Uncertain