Silkworm Genome Informatics Database

Gene

KWMTBOMO14555

Annotation

PREDICTED:_uncharacterized_protein_LOC105842673_[Bombyx_mori]

Location

Bomo_Chr24(+):10171499-10176050 View in EpiBrowser

Transcription factor

HTH

Location in the cell

Nuclear Reliability : 2.589

CDS

ATGCCACGAAAAGCAAAAGTGATTAAGCCCGGTGTGCGTAAATATGGCGTAAAAGCTATTTTAGAGGAAGCCTTAGATAAAATCCGATCGGGAGCTTTAACTAGGATGCAAGCTTCAAAAAGGTATAACATACCGGCAGTAACTTTATTTTATAAATTAAAGCAAAAGCATACTAAGGATGTTGGTAGACCAATTGCACTGTCGAAATCTGAGGAAGAAAGTTTTAAGTCTCATTTGTTAGTGCTGAGTGATATTAGAATACCAATAAATGATGTAGTTGCACAAGAGTATCTTGTGAGTTCAGGCGGCATTCTAATAAGCTCTAAGGAAGCCACAAAAAATTATGAAAACGCACAGCCAGATAAGATCAAAGAAGATGTGTTTTGTGTTTTCAGAGATGAAGGAAGTTCGAGATGTTCCGTGGATCCATTGAAAGACTAA

Protein

MPRKAKVIKPGVRKYGVKAILEEALDKIRSGALTRMQASKRYNIPAVTLFYKLKQKHTKDVGRPIALSKSEEESFKSHLLVLSDIRIPINDVVAQEYLVSSGGILISSKEATKNYENAQPDKIKEDVFCVFRDEGSSRCSVDPLKD

Uniprot

A0A1B6L0P8 H9IWM5 A0A1B6KLJ7 T1JG87 J9K9P0 A0A1Y1KZ51 + More
V3ZBN1 A0A1E1WU51 A0A3S2TIP6 A0A067QZD6 A0A0J7KF01 A0A0L7LGJ4 A0A2C9JXP0 A0A0L7KQ98

Pubmed

19121390 28004739 23254933 24845553 26227816 15562597 + More

EMBL

GEBQ01022752 JAT17225.1 BABH01021160 BABH01021161 BABH01021162 BABH01021163 + More
GEBQ01027923 JAT12054.1 JH432196 ABLF02011164 GEZM01069098 JAV66644.1 KB202685 ESO88428.1 GDQN01000733 JAT90321.1 RSAL01000111 RVE47096.1 KK852859 KDR14852.1 LBMM01008491 KMQ88832.1 JTDY01001207 KOB74540.1 JTDY01007086 KOB65467.1

Proteomes

UP000005204 UP000007819 UP000030746 UP000283053 UP000027135 UP000036403 + More
UP000037510 UP000076420

PRIDE

H9IWM5

Pfam

PF05225   HTH_psq        + More
PF03184   DDE_1
PF13843   DDE_Tnp_1_7
PF13976   gag_pre-integrs
PF04500   FLYWCH
PF03221   HTH_Tnp_Tc5

Interpro

IPR007889   HTH_Psq        + More
IPR009057   Homeobox-like_sf
IPR004875   DDE_SF_endonuclease_dom
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR029526   PGBD
IPR025724   GAG-pre-integrase_dom
IPR006600   HTH_CenpB_DNA-bd_dom
IPR007588   Znf_FLYWCH

SUPFAM

SSF46689 SSF46689 + More
SSF57667 SSF57667

ProteinModelPortal

A0A1B6L0P8 H9IWM5 A0A1B6KLJ7 T1JG87 J9K9P0 A0A1Y1KZ51 + More
V3ZBN1 A0A1E1WU51 A0A3S2TIP6 A0A067QZD6 A0A0J7KF01 A0A0L7LGJ4 A0A2C9JXP0 A0A0L7KQ98

KEGG

105842673 no KO assigned | (RefSeq) uncharacterized LOC105842673

GO

GO:0003677 GO:0005634 GO:0003676 GO:0046034 GO:0005524 GO:0006085 GO:0006101 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Subcellular location

Nucleus

Length:

146

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0017

Exp number, first 60 AAs:

0.00014

Total prob of N-in:

0.32079

outside

1 - 146

Pi

212.170454

Theta

175.803393

Tajima's D

0.823095

CLR

0.012041

CSRT

0.612019399030049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics