SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14554
Pre Gene Modal
BGIBMGA009429
Annotation
PREDICTED:_fibrinogen_alpha_chain-like_[Bombyx_mori]
Location
Bomo_Chr24(+):10144109-10148482      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.619
 

Sequence

CDS
ATGGAGCGGCCCGGAACTAGCGGAGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCCCCGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGAGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCGCCCCGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCGCCCCGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCCCCGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCGCTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGAAGCGGCCCGGAACTAGCGGGGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGAGCCAGCACTCTGGTCATGGAGCGGCCCGGAACTAGCGGGGCCAGCACCCCGGTCATGGAGCGGCCTGGAACTAGCGGGGCCAGCACCCTGGTCATGGAGCGGCCCGGCACTAGCGGGGCCAGCACCTCGGCCACCGAGCGGCCTGTTATCCCTTCGTCCTCTCGACCTCCTCGTCCTCTTCGCGAAGACGAAATTATAGCACTGCTGAATTACGCGCTAGCCCGAGAACTTAAGACCCGCGGCTTTGACTGTGTGGGCACACTGCGGACTAACCGACAATTTGTGCCGTACGAATTGACGTCCCTTACAAAAAAGGATATGACAGTCGGTCAAGTGACGGGATGCACCTCGGGAGATGTGGATCTTTTGGTGTGGAAAGATAAAAACCGGGTGGCTTTTATTTCCTCATACCATGGTCTCGCATCTGTTAGGTTTGAGGAAAGACTGAAGCCGACTGTCGCTTGCGATTATAACGAGTTTGGTTCACCAGTTTATGTCCACATTCCTAAGGAAAAGAGAAGGAAATTCGACATGAAGGCTGAGAAGGGAGTAATGGTTGGCTATGGCGAAGAGACCAAGGGTTATAGAATCTATTTCTCTGAGAAAAATTGTGTATTTATACAGAGAGATGTGGTATTCTTAAATAAAGAGGAAGATAAGGAGGAAGAAACTACTATTATGCTGAATCTAGATAGTCAACCTACAAATGATATGGTTGATTCAGTGACAGTGGAAGAAATAACTGAAAGTGAAGTATCTCAACCTAACCCAAGTGATACTCATACTAGTCTCATTACAGATACGTCCTCAGTGGAAAGTGAGAGTGAGTGTTCAAGTGAATACATACCTTCGGAGGATGAATCGTTGAAGGTTGATGAACTATTTCATCGAACACAGCCACATATGAAGAGGCCATTGATAGAACTGATTCAAGTAAATGGAGAGAGGCAATGA
Protein
MERPGTSGASTLVMKRPGTSGASAPVMERPGTSGASTLVMKRPGTSGASALVMERPGTSGASTLVMERPGTSGASALVMERPGTSGASTLVMERPGTSGASTLVMERPGTSGASALVMERPGTSGASTLVMKRPGTSGASALVMKRPGTSGASALVMERPGTSGASAPVMERPGTSGASTLVMKRPGTSGASALVMKRPGTSGASALVMKRPGTSGASALVMERPGTSGASAPVMERPGTSGASTLVMKRPGTSGASTLVMKRPGTSGASTLVMKRPGTSGASAPVMERPGTSGASTLVMERPGTSGASALVMERPGTSGASTLVMERPGTSGASTLVMKRPGTSGASALVMERPGTSGASTLVMERPGTSGASTLVMERPGTSGASTLVMERPGTSGASTLVMKRPGTSGASTLVMERPGTSGASTLVMERPGTSGASTPVMERPGTSGASTLVMERPGTSGASTSATERPVIPSSSRPPRPLREDEIIALLNYALARELKTRGFDCVGTLRTNRQFVPYELTSLTKKDMTVGQVTGCTSGDVDLLVWKDKNRVAFISSYHGLASVRFEERLKPTVACDYNEFGSPVYVHIPKEKRRKFDMKAEKGVMVGYGEETKGYRIYFSEKNCVFIQRDVVFLNKEEDKEEETTIMLNLDSQPTNDMVDSVTVEEITESEVSQPNPSDTHTSLITDTSSVESESECSSEYIPSEDESLKVDELFHRTQPHMKRPLIELIQVNGERQ

Summary

Uniprot
A0A2A6CG39   A0A1Y2CS53   A0A084B6E0  
Pubmed
18806794    25015739   
EMBL
ABKE03000039    PDM77048.1    MCOG01000099    ORY49684.1    KL647913    KEY73119.1    + More
Proteomes
UP000232936    UP000193920    UP000028045   
Pfam
PF00627   UBA        + More
PF08238   Sel1
PF05792   Candida_ALS
Interpro
IPR015940   UBA        + More
IPR016024   ARM-type_fold       
IPR006597   Sel1-like       
IPR011990   TPR-like_helical_dom_sf       
IPR009060   UBA-like_sf       
IPR033504   ALS       
IPR008440   Agglutinin-like_ALS_rpt       
SUPFAM
SSF46934   SSF46934        + More
SSF48371   SSF48371       
Gene 3D
1.25.40.10    
ProteinModelPortal
A0A2A6CG39   A0A1Y2CS53   A0A084B6E0  
PDB
1DEQ     E-value=0.00090487,     Score=103

Ontologies

KEGG
105842777    no KO assigned | (RefSeq) fibrinogen alpha chain-like
GO
GO:0016021   GO:0007155  
PANTHER
PTHR33793  

Topology

Length:
741
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8e-05
Exp number, first 60 AAs:
8e-05
Total prob of N-in:
0.00009
outside
1  -  741
 
 

Population Genetic Test Statistics

Pi
370.187373
Theta
210.840255
Tajima's D
2.349581
CLR
0.371147
CSRT
0.930353482325884
Interpretation
Uncertain
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