Gene

KWMTBOMO14548

Annotation

retrotransposon_protein?_putative?_Ty1-copia_subclass_[Oryza_sativa_Japonica_Group]

Location

Bomo_Chr24(-):10033130-10034488      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.065

CDS

ATGTTTACGTCAGAAAATAATGACGACTATGACTGCTCTTTATTAACATACAAAGAAGCTGTGACTGGCATCGACAGACGAAATTGGGAGAAGGCGATACTATCTGAATTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTAGTGAAGTAGTTTGGCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAGTCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCATAGGAAAAGATAAGAAAAAGATCGAAGTTATTTTGAAGAAACTTGAAACCAAATTCCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAATTCTTACTCAGAGATCCTACATAAATGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACACCCGCAAGTAGCGATTCAAAATCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATTGGGAAGCAGTGGGAAGTTTACTGTACCTGTCTACTGGAGACCCATTGACGCGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCAGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAATAATCGATTTGGACATAAAAATAAATCTGTATGTTGATAACCAAAATTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGGTCGAAGCACACAGACGTGCGGTACCATTTTATACATGAACACTTCGTGCATGGATTAATAAATATTAGCTACTGTCCAACAGAAATTCAGTTAGCTGACGTAATGACAAAACCATTGTCAAAAGTAAAATTTGAAAGACACTGTGCAAGATTAATGCATGTATAG

Protein

MFTSENNDDYDCSLLTYKEAVTGIDRRNWEKAILSELYGELSDEVYMKLPVGYETNCNTSEVVWRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVIGKDKKKIEVILKKLETKFQMKKNENPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYWEAVGSLLYLSTGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEIIDLDIKINLYVDNQNSIQLVKSGSFNKRSKHTDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSKVKFERHCARLMHV

Similarity

Belongs to the glutamine synthetase family.

Uniprot

A0A0V0G477   A0A0A9YMV4   A0A2N9FL83   A0A2X0NRB8   A0A0A9Z091   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9YZ93   A0A2N9F319   A0A2N9F718   A0A2N9GAS0   A0A2N9GMS8   A0A2N9GBX0   Q7G2K5   A0A2N9GFS8   A0A139WFV5   A0A2N9IHB0   A0A2N9F3A0   A0A2Z6MWM4   A0A2N9IRW0   A5B5Q6   A0A2N9EHB5   A0A2X0M4D8   A0A2N9GHE6   A0A2N9EN30   A0A2K3M4Z2   A0A2N9EK04   H3H9M4   A0A2K3MYT4   A0A1R3HGA4   A0A2U1KNX6   A0A2N9H853   A5C5S1   A5AEC3   A5BYR2   A0A2N9G5X6   F6H2U0   A5ADT4   Q7X7G6   A0A2P6V0L8   A0A2N9G1P2   A0A2N9GHR4   A0A2N9EHZ0   A0A2N9FUY7   A5BB57   Q8W0X5   A5AZT5   A0A2N9EYI8   A0A250XND9   A0A2Z6NY60   A5BBP5   A5BT22   A0A2N9H4G9   A0A2N9GIE3   A5APE3   A0A2N9FZX5   A0A2N9IN51   A0A151R7Y9   A0A2N9I3V5   A0A2N9HIB6   A0A2N9I820   A0A061ESU1   A0A061E9H3   A5BXE0   K7JBX1   A5B8J4   A0A2N9IEV6   A0A2N9G021   A0A2N9HL28   Q10I04   A0A2N9EDW2   A5C758   A0A2N9HKT3   A0A251TED9   A0A2N9HC90   A6XPF7   Q8LM60   G4TS75   A0A2N9IT58   A0A2N9HJW3   A0A1R3G2Z0   A0A2K3LKP0   A0A2N9IKC5   Q94LG0   A0A151TD14   A0A2N9EM80   A0A2N9GHB2   A0A2N9EXS6   Q01L55   A0A2X0N8D1   A5C163   A5ACZ5   A0A2Z6MIT7   A0A2N9ETF7   A0A2N9J0X6   A0A2N9JBD5   A0A2N9EML6   C5NNP2  

Pubmed

25401762    12791992    18362917    19820115    24500806    28382043    + More
16946064    29703587    17721507    12447439    29178410    15466290    14701910    22057054    23731509    20075255    16109971    28538728    19717792    22022265    19422603    21602323    22914168   

EMBL

GECL01003258    JAP02866.1    GBHO01012744    JAG30860.1    OIVN01000958    SPC87933.1    + More
FQNC01000011    SGY11774.1    GBHO01005715    JAG37889.1    GBHO01035865    JAG07739.1    GBHO01006096    JAG37508.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    OIVN01000521    SPC81512.1    OIVN01000602    SPC82810.1    OIVN01001657    SPC96321.1    OIVN01002113    SPD00719.1    OIVN01001697    SPC96741.1    DP000086    AAP54315.2    OIVN01002193    SPD01396.1    KQ971352    KYB26731.1    OIVN01005649    SPD23443.1    OIVN01000516    SPC81470.1    DF973549    GAU34203.1    OIVN01006170    SPD26869.1    AM447550    CAN76465.1    OIVN01000094    SPC74162.1    FQNC01000043    SGY49801.1    OIVN01001921    SPC98945.1    OIVN01000205    SPC76213.1    ASHM01049742    PNX85850.1    OIVN01000373    SPC79206.1    DS568046    ASHM01014005    PNX95963.1    AWWV01012043    OMO69325.1    PKPP01015627    PWA38442.1    OIVN01003344    SPD10596.1    AM483321    CAN73074.1    AM424437    CAN71185.1    AM476015    CAN61929.1    OIVN01001521    SPC94885.1    FN595231    CCB46625.1    AM424035    CAN82064.1    AL607003    CAE04585.2    LHPF02000053    PSC67594.1    OIVN01001372    SPC93219.1    SPC98939.1    OIVN01000106    SPC74382.1    OIVN01001193    SPC90993.1    AM453024    CAN61179.1    AF464738    AAL66758.1    AM441680    CAN65095.1    OIVN01000404    SPC79669.1    BEGY01000129    GAX84605.1    DF974410    GAU48356.1    AM453670    CAN76680.1    AM470056    CAN74984.1    OIVN01003190    SPD09397.1    OIVN01001946    SPC99200.1    AM431410    CAN64765.1    OIVN01001636    SPC96106.1    OIVN01006120    SPD25513.1    KQ483979    KYP38661.1    OIVN01004802    SPD19362.1    OIVN01003498    SPD11675.1    OIVN01004974    SPD20223.1    CM001883    EOY07906.1    CM001880    EOY01263.1    AM474616    CAN79422.1    AAZX01004352    AM450406    CAN74286.1    OIVN01005884    SPD24356.1    OIVN01001305    SPC92424.1    OIVN01003586    SPD12279.1    DP000009    ABF97186.1    OIVN01000025    SPC72824.1    AM484658    CAN64296.1    OIVN01003993    SPD14796.1    CM007900    OTG09093.1    OIVN01003546    SPD11986.1    DS264776    EDN05271.1    AC123594    AAM74419.1    CAFZ01000285    CCA74168.1    OIVN01006197    SPD27565.1    OIVN01003535    SPD11919.1    AWWV01015515    OMO52435.1    ASHM01035291    PNX79093.1    OIVN01005946    SPD24590.1    AC079853    AAK52561.1    ABF96427.1    CM003609    KYP64927.1    OIVN01000189    SPC75922.1    OIVN01001902    SPC98810.1    OIVN01000403    SPC79652.1    CR855107    CR855109    CAH66492.1    CAH66516.1    FMWP01000060    SCZ95056.1    AM478498    CAN66243.1    AM423491    CAN71132.1    DF973180    GAU18207.1    OIVN01000303    SPC77971.1    OIVN01006336    SPD30852.1    OIVN01006472    SPD33779.1    OIVN01000195    SPC76035.1    AB458444    BAH79981.1   

Proteomes

UP000249464    UP000007266    UP000236291    UP000005238    UP000188268    UP000245207    + More
UP000009183    UP000239649    UP000232323    UP000075243    UP000026915    UP000002358    UP000215914    UP000009297    UP000007148    UP000249723   

PRIDE

Q8W0X5   

Pfam

PF13976   gag_pre-integrs        + More
PF07727   RVT_2
PF00665   rve
PF00098   zf-CCHC
PF00078   RVT_1
PF14244   Retrotran_gag_3
PF05699   Dimer_Tnp_hAT
PF13087   AAA_12
PF13456   RVT_3
PF00636   Ribonuclease_3
PF02170   PAZ
PF00271   Helicase_C
PF03368   Dicer_dimer
PF03732   Retrotrans_gag
PF00120   Gln-synt_C
PF13961   DUF4219
PF03094   Mlo
PF04434   SWIM
PF00069   Pkinase

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR000477   RT_dom       
IPR029472   Copia-like_N       
IPR008906   HATC_C_dom       
IPR003656   Znf_BED       
IPR041679   DNA2/NAM7-like_AAA       
IPR027417   P-loop_NTPase       
IPR002156   RNaseH_domain       
IPR003100   PAZ_dom       
IPR000999   RNase_III_dom       
IPR038248   Dicer_dimer_sf       
IPR036085   PAZ_dom_sf       
IPR005034   Dicer_dimerisation_dom       
IPR036389   RNase_III_sf       
IPR014720   dsRBD_dom       
IPR001650   Helicase_C       
IPR005162   Retrotrans_gag_dom       
IPR014746   Gln_synth/guanido_kin_cat_dom       
IPR008146   Gln_synth_cat_dom       
IPR025314   DUF4219       
IPR004326   Mlo       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006564   Znf_PMZ       
IPR007527   Znf_SWIM       
IPR000719   Prot_kinase_dom       
IPR008266   Tyr_kinase_AS       
IPR011009   Kinase-like_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF52540   SSF52540       
SSF101690   SSF101690       
SSF69065   SSF69065       
SSF55931   SSF55931       
SSF56219   SSF56219       
SSF56112   SSF56112       

Gene 3D

3.30.420.10     1.10.1520.10     3.30.160.380     3.60.10.10    

CDD

cd00079  HELICc
cd00593  RIBOc

ProteinModelPortal

A0A0V0G477   A0A0A9YMV4   A0A2N9FL83   A0A2X0NRB8   A0A0A9Z091   A0A0A9WIY3   + More
A0A0A9Z2D6   A0A0A9YZ93   A0A2N9F319   A0A2N9F718   A0A2N9GAS0   A0A2N9GMS8   A0A2N9GBX0   Q7G2K5   A0A2N9GFS8   A0A139WFV5   A0A2N9IHB0   A0A2N9F3A0   A0A2Z6MWM4   A0A2N9IRW0   A5B5Q6   A0A2N9EHB5   A0A2X0M4D8   A0A2N9GHE6   A0A2N9EN30   A0A2K3M4Z2   A0A2N9EK04   H3H9M4   A0A2K3MYT4   A0A1R3HGA4   A0A2U1KNX6   A0A2N9H853   A5C5S1   A5AEC3   A5BYR2   A0A2N9G5X6   F6H2U0   A5ADT4   Q7X7G6   A0A2P6V0L8   A0A2N9G1P2   A0A2N9GHR4   A0A2N9EHZ0   A0A2N9FUY7   A5BB57   Q8W0X5   A5AZT5   A0A2N9EYI8   A0A250XND9   A0A2Z6NY60   A5BBP5   A5BT22   A0A2N9H4G9   A0A2N9GIE3   A5APE3   A0A2N9FZX5   A0A2N9IN51   A0A151R7Y9   A0A2N9I3V5   A0A2N9HIB6   A0A2N9I820   A0A061ESU1   A0A061E9H3   A5BXE0   K7JBX1   A5B8J4   A0A2N9IEV6   A0A2N9G021   A0A2N9HL28   Q10I04   A0A2N9EDW2   A5C758   A0A2N9HKT3   A0A251TED9   A0A2N9HC90   A6XPF7   Q8LM60   G4TS75   A0A2N9IT58   A0A2N9HJW3   A0A1R3G2Z0   A0A2K3LKP0   A0A2N9IKC5   Q94LG0   A0A151TD14   A0A2N9EM80   A0A2N9GHB2   A0A2N9EXS6   Q01L55   A0A2X0N8D1   A5C163   A5ACZ5   A0A2Z6MIT7   A0A2N9ETF7   A0A2N9J0X6   A0A2N9JBD5   A0A2N9EML6   C5NNP2  

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0003677   GO:0046983   GO:0009555   GO:0005886   GO:0000326   GO:0005802   GO:0006886   GO:0004523   GO:0003723   GO:0004525   GO:0030422   GO:0016442   GO:0005737   GO:0005634   GO:0016021   GO:0016301   GO:0004356   GO:0006807   GO:0003964   GO:0006952   GO:0005524   GO:0004672  

PANTHER

PTHR11439  

Length:

362

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00844

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02555

outside

1  -  362

 

 

Pi

286.885449

Theta

185.624636

Tajima's D

1.887934

CLR

0

CSRT

0.866656667166642

Interpretation

Uncertain