Silkworm Genome Informatics Database

Gene

KWMTBOMO14537

Pre Gene Modal

BGIBMGA014451

Annotation

PREDICTED:_zinc_finger_protein_271-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(+):9894209-9900011 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.574

CDS

ATGAGCAACATATTTAACGAGAAACATCCGGAGATACTTGAAAAAATCGAATTCTGCACTGGTATTTTGTTAAAACCTGAAGACGGTCTTCCGGCACACATATGCGGAATGTGTAGTAAGAACCTGACAGTTGCTTTTGATTTCAAAACGAAATGTATATTCAGCGACAAAATCTTACGGAAACTCTGTACGGCGGTCAAACAGGAACACAACTGCATCAGTGAAATCGACTATGAAGATGACAACAATGACTTCTTCACCAACAACAATGAAACAAAGAGTAAATCAAGCAAGGATTGTGAGGTTGACGTAGCCATTGTTAAGACGGAATGCATGGATGCTCAGAATGACTTTAAGAAGATTAATTCGAAAACATTTAAATGCAAAACCGTAAGACGGAAAAAGAAAAAGAAATCTATACTGAGGAATCGGGAGGTAATTAAGAAAAAGAAGGTTGTGGAAGAATCCTCTGAAGCCTTCGAACCTAAACCGCCGATTGTATTCCCGTGCGGTATATGCGATTTGAATTTCGATAACAAAAAATCTCTGGTGGCGCATCGAAAAGAAAAACATTCCAGTAAAGACGGACTTATATGCGAGATATGCGGTAAGCTGTTCCCGCGCGCTTCGTACAGCACTCACCTACGTACGCACAGGACGCCGAACTATAAGTGCGACCATTGTGATTACGGGACCGTTTACAAGAGCGACCTGGTCAAACACGTTCAGAGGCACTGCGGCAACACCAAAACGTACAAGTGCGATTCCTGCACGTGCTCGTACTACACGTGCTCGAGTCTGTACGCCCACCGGCGGCTCGTGCACCAGGGCGAGAGGCGCTTCCCCTGCACCCACTGCGAGAAGAGATTCAACGATAGGAGCAAATTGCAGAGGCACATCGACACGCACTTCGGCGTCAAGCGATACGAATGCGAGATATGTCATTCGTGTTACACGCGGCGTTGCTATTGGAAGAGGCATCTGTTGAAGCAGCACAACATCGAGACCCCCCGCATGAAGCCGGGGCGGCAGCGCGCGGGGACCCTCCCGGGGGACCACCAGAGCAAACGCCTCAAGTGTAACTACAGGACGTGA

Protein

MSNIFNEKHPEILEKIEFCTGILLKPEDGLPAHICGMCSKNLTVAFDFKTKCIFSDKILRKLCTAVKQEHNCISEIDYEDDNNDFFTNNNETKSKSSKDCEVDVAIVKTECMDAQNDFKKINSKTFKCKTVRRKKKKKSILRNREVIKKKKVVEESSEAFEPKPPIVFPCGICDLNFDNKKSLVAHRKEKHSSKDGLICEICGKLFPRASYSTHLRTHRTPNYKCDHCDYGTVYKSDLVKHVQRHCGNTKTYKCDSCTCSYYTCSSLYAHRRLVHQGERRFPCTHCEKRFNDRSKLQRHIDTHFGVKRYECEICHSCYTRRCYWKRHLLKQHNIETPRMKPGRQRAGTLPGDHQSKRLKCNYRT

Uniprot

H9JY33 A0A2H1W2Z4 A0A2A4J4I0 A0A212EUK8

Pubmed

19121390 22118469

EMBL

BABH01042864 ODYU01006000 SOQ47459.1 NWSH01003130 PCG66901.1 AGBW02012340 + More
OWR45190.1

Proteomes

UP000005204 UP000218220 UP000007151

PRIDE

H9JY33

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JY33 A0A2H1W2Z4 A0A2A4J4I0 A0A212EUK8

PDB

5T0U E-value=2.24765e-10, Score=157

KEGG

101741889 no KO assigned | (RefSeq) zinc finger protein 100-like

GO

GO:0005634 GO:0003676 GO:0008270 GO:0046872 GO:0006085 GO:0006101 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.02012

outside

1 - 364

Pi

286.821463

Theta

154.456028

Tajima's D

2.682071

CLR

0.066959

CSRT

0.95945202739863

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics