SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14533
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.542
 

Sequence

CDS
ATGATGTTACCCCCCATTACTACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCATAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTCTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGAACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCTCGACGATAGGAAAAATCTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAATTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTATAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAATTGACCGCCGAAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTATATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAAGATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGAATAGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCGAAGCAAACTGTCCCTCCGTAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCAACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCTTGGTTCCTTAGGAATGTGGATCTCCACGACGACCTGGAGCTCGACTCTTTTAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGACGAGCGAACTAA
Protein
MMLPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEANVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAEVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Summary

EMBL
AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    KQ459580    KPI99178.1    GALX01005359    JAB63107.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    ABLF02008933    GBBI01004571    JAC14141.1    GFTR01008038    JAW08388.1    ABLF02033757    ABLF02042518    ABLF02057746    GGMS01012005    MBY81208.1    GGMR01018716    MBY31335.1    GGMR01016114    MBY28733.1    GGMS01000737    MBY69940.1    GGMS01004685    MBY73888.1    GBBI01004395    JAC14317.1    GGMS01008766    MBY77969.1    NEVH01003017    PNF40781.1    GEZM01038405    JAV81653.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01007443    PNF35684.1    NEVH01023962    PNF17612.1    GGMS01006359    MBY75562.1    NEVH01020071    PNF21969.1    NEVH01010546    PNF32261.1    NEVH01005938    PNF38077.1    GGMS01017914    MBY87117.1    NWSH01000032    PCG80497.1    NEVH01023961    PNF17613.1    NEVH01001355    PNF42855.1    NEVH01000280    PNF43672.1    GFXV01006424    MBW18229.1    GFXV01007093    MBW18898.1    GBGD01000880    JAC88009.1    GGMR01000676    MBY13295.1    GBGD01000799    JAC88090.1    NEVH01006721    PNF37225.1    GGMR01003407    MBY16026.1    NEVH01019964    PNF22161.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01002716    PNF41415.1    RPOV01000134    RPJ78669.1    ABLF02024246    PYGN01000192    PSN51582.1    LBMM01010106    KMQ87671.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01026386    PNF14434.1    GGMR01004661    MBY17280.1    PCG80496.1    NEVH01017559    PNF23833.1    KK113014    KFM59099.1    NEVH01026106    PNF14658.1    GGFJ01001858    MBW50999.1    NEVH01011985    PNF31054.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01017470    PNF24199.1    JRES01000644    KNC29657.1    GEZM01053022    JAV74219.1    GGMS01002992    MBY72195.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01019376    PNF22596.1    GALX01005300    JAB63166.1    GGFJ01001857    MBW50998.1    GBBI01001646    JAC17066.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    KL813758    KFM83187.1    NEVH01021205    PNF19912.1    GFTR01008279    JAW08147.1    GGFJ01002256    MBW51397.1    NEVH01026154    PNF14491.1    NEVH01012089    PNF30491.1    GGFJ01002257    MBW51398.1    NEVH01007393    PNF35987.1    LBMM01014395    KMQ85192.1    NEVH01007578    PNF35646.1    NEVH01006736    PNF36716.1    ABLF02020655    ABLF02039168    ABLF02061060    NEVH01019080    PNF22876.1    ABLF02055645    GGFJ01001842    MBW50983.1    ABLF02034467   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.00134184,     Score=100

Ontologies

Topology

Length:
520
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.50610999999998
Exp number, first 60 AAs:
4.06305
Total prob of N-in:
0.10941
outside
1  -  520
 
 

Population Genetic Test Statistics

Pi
29.381738
Theta
35.618387
Tajima's D
3.225047
CLR
8.250751
CSRT
0.987650617469127
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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