Gene

KWMTBOMO14532

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(-):9752090-9753678      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.306

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGGCACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCACTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACACCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATGTACTCGACATAGCGTTATTAAAAAACGTAACTCTGAGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGACTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCAACATTAGATAGATCATCGAAACAAGTTGTAGCGGAGGATTTCCTTCACCGCTTCAAATTGTCCGATGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTTGATGATGACGAAAAAGCAGAGTTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGTCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAGGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTGCCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCAGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDVLDIALLKNVTLSLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRVSLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPRCGKKRTLSAYINQVNQKIIRRATARLASSCL

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   K7IN67   V5GNJ2   A0A1B6MIM7   A0A139WA11   X1X0M4   A0A2S2QEE0   A0A023EYS8   A0A087THU2   J9LC21   A0A2S2PEZ9   A0A087UCW3   A0A087U3K8   A0A2S2NJB5   A0A087T3W0   X1WQI9   A0A2S2P6H1   V5GNF3   A0A1Y1K0C8   A0A224XB44   X1WNI2   X1WK15   X1WLB2   A0A2S2N6Q7   T1ID59   A0A224X6Q4   A0A2S2PPK8   X1WKS2   U4UGQ8   X1WVL6   A0A2J7PP17   J9LFC9   A0A087UB64   J9KPF1   X1WZH0   J9KKL6   A0A224XI99   A0A2M4AQV0   A0A2M4AQK3   A0A224X6T4   A0A2H8TF37   A0A224X6S1   A0A2S2PJ52   A0A1B6C2V8   J9MAR0   A0A1Y1KFT3   A0A069DZL8   A0A2S2PA10   A0A2S2P6S3   A0A1Y1KFR3   A0A224X6U5   A0A224X6W2   J9JS95   A0A224XJI0   J9LVT4   A0A2M4CV42   A0A2J7R7D0   A0A2A4IUM2   A0A2M4CV52   A0A2S2NCK2   A0A2S2NH02   J9JZG6   J9M522   A0A0V0G5B6   A0A2S2R7N0   A0A2S2Q383   A0A2S2R2E8   A0A087UGF5   A0A2S2QV22   J9MAC6   A0A2J7PQB5   A0A2S2QDN9   A0A0J7K503   A0A023F1L2   A0A2S2Q2R8   A0A2S2PJG2   A0A3S2NJ07   A0A232ENU1   A0A224X746   J9KLB1   A0A023F0I3   A0A224X724   A0A023EZE6   A0A2S2P7B2   A0A1Y1LKN6   J9LBF1   A0A0J7K0R9   A0A224XF24   A0A224X7Z3   A0A0P4VK54   A0A2J7QR37   A0A2J7PBY3   A0A224XIB0  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    23537049    26334808    28648823    27129103   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GEBQ01004157    JAT35820.1    KQ971729    KYB24751.1    ABLF02065839    GGMS01006359    MBY75562.1    GBBI01004395    JAC14317.1    KK115285    KFM64681.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01015412    MBY28031.1    KK119261    KFM75202.1    KK118005    KFM71947.1    GGMR01004661    MBY17280.1    KK113281    KFM59799.1    ABLF02022418    GGMR01012189    MBY24808.1    GALX01005359    JAB63107.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GFTR01008262    JAW08164.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02012584    ABLF02013765    ABLF02024884    ABLF02042518    ABLF02057746    GGMR01000226    MBY12845.1    ACPB03027378    GFTR01008279    JAW08147.1    GGMR01018716    MBY31335.1    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    KB632143    ERL89075.1    ABLF02042385    NEVH01023280    PNF18085.1    ABLF02023911    KK119069    KFM74603.1    ABLF02041767    ABLF02034467    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    GFTR01008256    JAW08170.1    GGFK01009846    MBW43167.1    GGFK01009732    MBW43053.1    GFTR01008261    JAW08165.1    GFXV01000908    MBW12713.1    GFTR01008271    JAW08155.1    GGMR01016297    MBY28916.1    GEDC01029594    JAS07704.1    ABLF02037715    GEZM01084970    JAV60359.1    GBGD01000415    JAC88474.1    GGMR01013409    MBY26028.1    GGMR01012443    MBY25062.1    GEZM01084969    JAV60363.1    GFTR01008251    JAW08175.1    GFTR01008260    JAW08166.1    ABLF02028535    ABLF02028545    GFTR01008257    JAW08169.1    ABLF02003241    ABLF02003242    ABLF02025904    GGFL01005012    MBW69190.1    NEVH01006736    PNF36716.1    NWSH01007753    PCG62823.1    GGFL01004957    MBW69135.1    GGMR01002322    MBY14941.1    GGMR01003864    MBY16483.1    ABLF02037436    ABLF02024246    GECL01003538    JAP02586.1    GGMS01016818    MBY86021.1    GGMS01002992    MBY72195.1    GGMS01014910    MBY84113.1    KK119692    KFM76444.1    GGMS01012398    MBY81601.1    ABLF02007779    ABLF02007782    ABLF02050375    NEVH01022639    PNF18527.1    GGMS01006655    MBY75858.1    LBMM01014024    KMQ85369.1    GBBI01003811    JAC14901.1    GGMS01002786    MBY71989.1    GGMR01016905    MBY29524.1    RSAL01000708    RVE41206.1    NNAY01003095    OXU19992.1    GFTR01008151    JAW08275.1    ABLF02040174    ABLF02040183    ABLF02055266    GBBI01003747    JAC14965.1    GFTR01008169    JAW08257.1    GBBI01004571    JAC14141.1    GGMR01012676    MBY25295.1    GEZM01053022    JAV74219.1    ABLF02012739    ABLF02012741    LBMM01018021    KMQ83899.1    GFTR01008038    JAW08388.1    GFTR01007929    JAW08497.1    GDKW01003730    JAI52865.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    GFTR01008246    JAW08180.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000054359    UP000015103    + More
UP000030742    UP000235965    UP000218220    UP000036403    UP000283053    UP000215335   

PRIDE

Q93137    Q9BPQ0    Q9XXW0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos
PF14291   DUF4371
PF03564   DUF1759
PF18701   DUF5641
PF00665   rve
PF05380   Peptidase_A17
PF17921   Integrase_H2C2
PF05585   DUF1758
PF04937   DUF659

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR025398   DUF4371       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
IPR040676   DUF5641       
IPR008737   Peptidase_asp_put       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR037220   BED_dom       
IPR007021   DUF659       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   K7IN67   V5GNJ2   A0A1B6MIM7   A0A139WA11   X1X0M4   A0A2S2QEE0   A0A023EYS8   A0A087THU2   J9LC21   A0A2S2PEZ9   A0A087UCW3   A0A087U3K8   A0A2S2NJB5   A0A087T3W0   X1WQI9   A0A2S2P6H1   V5GNF3   A0A1Y1K0C8   A0A224XB44   X1WNI2   X1WK15   X1WLB2   A0A2S2N6Q7   T1ID59   A0A224X6Q4   A0A2S2PPK8   X1WKS2   U4UGQ8   X1WVL6   A0A2J7PP17   J9LFC9   A0A087UB64   J9KPF1   X1WZH0   J9KKL6   A0A224XI99   A0A2M4AQV0   A0A2M4AQK3   A0A224X6T4   A0A2H8TF37   A0A224X6S1   A0A2S2PJ52   A0A1B6C2V8   J9MAR0   A0A1Y1KFT3   A0A069DZL8   A0A2S2PA10   A0A2S2P6S3   A0A1Y1KFR3   A0A224X6U5   A0A224X6W2   J9JS95   A0A224XJI0   J9LVT4   A0A2M4CV42   A0A2J7R7D0   A0A2A4IUM2   A0A2M4CV52   A0A2S2NCK2   A0A2S2NH02   J9JZG6   J9M522   A0A0V0G5B6   A0A2S2R7N0   A0A2S2Q383   A0A2S2R2E8   A0A087UGF5   A0A2S2QV22   J9MAC6   A0A2J7PQB5   A0A2S2QDN9   A0A0J7K503   A0A023F1L2   A0A2S2Q2R8   A0A2S2PJG2   A0A3S2NJ07   A0A232ENU1   A0A224X746   J9KLB1   A0A023F0I3   A0A224X724   A0A023EZE6   A0A2S2P7B2   A0A1Y1LKN6   J9LBF1   A0A0J7K0R9   A0A224XF24   A0A224X7Z3   A0A0P4VK54   A0A2J7QR37   A0A2J7PBY3   A0A224XIB0  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003676   GO:0015074  

Length:

470

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.66509

Exp number, first 60 AAs:

0.05517

Total prob of N-in:

0.01069

outside

1  -  414

TMhelix

415  -  437

inside

438  -  470

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.000539

CSRT

0

Interpretation

Uncertain