Gene

KWMTBOMO14531

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr24(-):9748856-9749738      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.01

CDS

ATGCGATCTCCGCTCCAGGGGGAGCCTCGTCCTGGTGCGGCGGAGGTTCGAGCGCGGAAACTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCACCTACGGGCGACGAACCGTCGAGGCGATCCGCCCGATCCTCTTGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACGCAGGTGCTCATGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACACCGAAGTGCCACCATTGCAGTGACTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCTCCGCTTTCGCGGAGCAGCGGCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGTTACGATGCCCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGACGGAACGGGAGAGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGAGGTCGGAGGAGGGCGTATGTCCAGCTCCGGCCCCTATGAGGAGGCAGTCTCCTCCCGGTGATGGTCACGGGGCGACCTAA

Protein

MRSPLQGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPTYGRRTVEAIRPILLDWVNRDRGRLTFRATQVLMGHGCFGRYLHLVARREPTPKCHHCSDCNEDTAEHTLAYCSAFAEQRRVLVAKIGPDLSLPTVVVTMPGSDESWQAMLDFCESTISQKEATERERELFFPLGAVPPPSSRRSEEGVCPAPAPMRRQSPPGDGHGAT

Cofactor

FAD

Similarity

Belongs to the FBPase class 1 family.
Belongs to the GMC oxidoreductase family.

Uniprot

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A0J7K2M2   A0A2W1BDU5   + More
A0A3L8D4Y9   A0A2W1BSQ5   A0A0J7N1D9   Q8MY27   A0A3L8DDS1   A0A2H1W776   A0A3S2P7E0   Q8MY31   Q8MY33   A0A0J7KJB9   A0A0J7MZM4   A0A3S2LNH8   Q8MY35   A0A2H1WNZ5   A0A0J7KIY3   A0A0J7KS67   A0A3S2NGT9   A0A0J7N7H9   A0A3S2N998   A0A0J7KIY5   A0A2H1VYR8   Q6YBU8   A0A0J7KIQ5   A0A0J7KQU9   A0A0J7KQK3   A0A0J7KJH4   A0A0J7JZF7   A0A0J7JZ13   A0A2H1VT87   A0A3L8DXT9   A0A2S2P2F0   A0A0J7KJ07   X1XF11   A0A0J7KYD2   A0A0J7KM81   A0A0J7KJG6  

Pubmed

12644555    28756777    30249741    12770624   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    LBMM01016102    KMQ84557.1    KZ150308    PZC71477.1    QOIP01000014    RLU15083.1    KZ149950    PZC76665.1    LBMM01012027    KMQ86470.1    AB078935    BAC06462.1    QOIP01000009    RLU18544.1    ODYU01006757    SOQ48893.1    RSAL01000006    RVE54258.1    AB078931    BAC06456.1    AB078930    BAC06454.1    LBMM01006538    KMQ90523.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    RSAL01003504    RVE40273.1    AB078929    BAC06452.1    ODYU01009945    SOQ54696.1    LBMM01006909    KMQ90209.1    LBMM01003679    KMQ93242.1    RSAL01000109    RVE47213.1    LBMM01008861    KMQ88580.1    RSAL01000481    RVE41577.1    LBMM01006954    KMQ90166.1    ODYU01005282    SOQ45985.1    AY162267    AAO72078.1    LBMM01006996    KMQ90129.1    LBMM01004152    KMQ92762.1    LBMM01004272    KMQ92618.1    LBMM01006657    KMQ90417.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    ODYU01004136    SOQ43692.1    QOIP01000003    RLU25053.1    GGMR01010769    MBY23388.1    LBMM01006662    KMQ90413.1    ABLF02008325    ABLF02019403    LBMM01002052    KMQ95336.1    LBMM01005634    KMQ91349.1    LBMM01006671    KMQ90407.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000007819   

PRIDE

Q5KTM7    Q868Q4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00316   FBPase
PF01421   Reprolysin
PF07776   zf-AD
PF00096   zf-C2H2
PF00732   GMC_oxred_N

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR033391   FBPase_N       
IPR000146   FBPase_class-1       
IPR028343   FBPtase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF51905   SSF51905       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60    

CDD

cd00354  FBPase

ProteinModelPortal

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A0J7K2M2   A0A2W1BDU5   + More
A0A3L8D4Y9   A0A2W1BSQ5   A0A0J7N1D9   Q8MY27   A0A3L8DDS1   A0A2H1W776   A0A3S2P7E0   Q8MY31   Q8MY33   A0A0J7KJB9   A0A0J7MZM4   A0A3S2LNH8   Q8MY35   A0A2H1WNZ5   A0A0J7KIY3   A0A0J7KS67   A0A3S2NGT9   A0A0J7N7H9   A0A3S2N998   A0A0J7KIY5   A0A2H1VYR8   Q6YBU8   A0A0J7KIQ5   A0A0J7KQU9   A0A0J7KQK3   A0A0J7KJH4   A0A0J7JZF7   A0A0J7JZ13   A0A2H1VT87   A0A3L8DXT9   A0A2S2P2F0   A0A0J7KJ07   X1XF11   A0A0J7KYD2   A0A0J7KM81   A0A0J7KJG6  

KEGG

101743754    no KO assigned | (RefSeq) uncharacterized LOC101743754

GO

GO:0003964   GO:0005975   GO:0016787   GO:0050660   GO:0016614   GO:0008270   GO:0003676   GO:0016021  

PANTHER

PTHR11556  

Length:

207

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0182

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04233

outside

1  -  207

 

 

Pi

119.056187

Theta

59.808197

Tajima's D

2.01242

CLR

0

CSRT

0.88105594720264

Interpretation

Uncertain