SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14529
Pre Gene Modal
BGIBMGA014397
Annotation
PREDICTED:_uncharacterized_protein_LOC101737775_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.333
 

Sequence

CDS
ATGGTTAAGCGGTGTCGGCGGGATCGAAGTGTGAGGGATGTTCTTCAATGTTTTCGTCAAACATTCTTGAGGCCACGAAGAACCTTGCTCCTCTCGGCCACGGCTGCATACCATCGAGGAGACGACGAGACACCAGATAGTTGCGAGAACAGCATATCCGATGAAGATTTGGAGGAATTAATAACTGAACTGGACGGAATCGAGGAGCTCTCGCGGAGGACGTTGTTCTGCGTCGGCTGCGGCTGTCGTCTTGTCATCGACAAGAAACACCCGGGCATTCAGTATTGCGTTTGCAAGGACGCTCAGACGAGCCTCGAGTCGGACGGCTGGAGCCCGTTTATGGAGGCCGATGACGTCATCATCTGGCGCAAGGAATACAAGCCCGGCCAGGGTCTATACGCGTACAAAGTGTACGGCAGGTACAGGGAAGTGAGGGCCGAGGACTTCGCTGCCGTTCAAGTCGACGGCGCCTACCGGACAGTCTGGGACACGGCCGTCGCGTCGCTGTCGGTGGTCGAGAGGGATGCGAATGGAGTCCCCGGCCAGGCCGTGCTCCACTGGGAGGTCCTGTGGCCGAGATTGTTCGCGAATCGTGATTACGTATACATACGTAGGCACAAGGAGTTCGATGTTAAATCGAGAAGCGATCCTCATAAGGAGGTTATATTTAACGAGGAGATTAAGAAGAGACTGTCCAGTGATGAAAGGACGAGCGTCCACTCGAACGCCAAGAGGAGGGCGCTGGAGGCCGAGAAATTCGTGACTAGAACGAAACCCAGGATCGAAAACAATAAGGTCTACATAATAGTGTCGAAGTCCTGCGAGCATCCCAACGTACCGGAGACCAAGAATGCCATCAGGGTCTCCGAGTACTGGAGTCACATGGTCATCAAGACACTGAACGGAGTCGACCAGACAGGGATGGAGTTTGTGTTGACGTATTATGACGAGCCAGCCGTGGGCGGGTTGCCCACAGGGGTGGCGGCGTGGGCCACGGGGCGGGCGGCTCCCGCATACCTGCAGAGGATGAGGACGGCCGCGATGAATTACAGAGAGCGCACCGCCGTGGAGGACCAGCAGGATCTCCCGGACTTCGTTCCGGGCAAAGTCTCGAACGTAATCGTCGAGAAGGAGCCTCAAGTCAACGAAGAAGACATGGAGTCATCGAAACAAGGTCCAGAATTGAATGGAAACAAGGAGACGAAAACCCGAGATCAGAGCACACAGACCGACGACGACCAACCCGATGTTAAGTCGAGAATTAATGCGGACAAGCCGAGTGGACCTCGTGTTAGTAAGGCAGTGCAGACATCCACGGAACAAGATGGCGATCGGTCGGATGACGAGACATCTGTTAGCTGGTGGCGCTATCTATATCCCCTATACTACTTCGTTTAG
Protein
MVKRCRRDRSVRDVLQCFRQTFLRPRRTLLLSATAAYHRGDDETPDSCENSISDEDLEELITELDGIEELSRRTLFCVGCGCRLVIDKKHPGIQYCVCKDAQTSLESDGWSPFMEADDVIIWRKEYKPGQGLYAYKVYGRYREVRAEDFAAVQVDGAYRTVWDTAVASLSVVERDANGVPGQAVLHWEVLWPRLFANRDYVYIRRHKEFDVKSRSDPHKEVIFNEEIKKRLSSDERTSVHSNAKRRALEAEKFVTRTKPRIENNKVYIIVSKSCEHPNVPETKNAIRVSEYWSHMVIKTLNGVDQTGMEFVLTYYDEPAVGGLPTGVAAWATGRAAPAYLQRMRTAAMNYRERTAVEDQQDLPDFVPGKVSNVIVEKEPQVNEEDMESSKQGPELNGNKETKTRDQSTQTDDDQPDVKSRINADKPSGPRVSKAVQTSTEQDGDRSDDETSVSWWRYLYPLYYFV

Summary

Pfam
PF01852   START        + More
PF00202   Aminotran_3
Interpro
IPR002913   START_lipid-bd_dom        + More
IPR023393   START-like_dom_sf       
IPR041949   START_STARD7       
IPR015424   PyrdxlP-dep_Trfase       
IPR010164   Orn_aminotrans       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR005814   Aminotrans_3       
IPR015422   PyrdxlP-dep_Trfase_dom1       
SUPFAM
SSF53383   SSF53383       
Gene 3D
PDB
1LN3     E-value=2.53658e-17,     Score=218

Ontologies

Topology

Length:
465
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10284
Exp number, first 60 AAs:
0.00055
Total prob of N-in:
0.06273
outside
1  -  465
 
 

Population Genetic Test Statistics

Pi
222.681017
Theta
157.873127
Tajima's D
2.44518
CLR
0.209293
CSRT
0.938553072346383
Interpretation
Uncertain
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