Gene

KWMTBOMO14516

Annotation

PREDICTED:_zinc_finger_BED_domain-containing_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr24(+):9148404-9149573      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.498

CDS

ATGCAAAGATTTCAAAAACCATTGTCTCACGTTCTTGCTGATTCTACCGACACTGAGTCTATATCTGGTACTGAATGGTCTAAAGTCGATTGCTTACTGAAAGTTATGAAGCCGTTATATGATGCTACGCAAATATCATGTGGAGTTAAATATCTTACTTTGTCAATGGTAAAACCCTTACTGTTTGGGATAATAAACGGTCTGAATAGTATCGAATTTGACTACGACGATTCATCGGAAAGGGGACAAGAATTTACAGATAATATTTTGAATGTTCTAGAAGTCAGATTTTGTGAAGTTGATCGTGATATTATTTTTAAGAAGAGTACTTATCTGGATCCCCGATACGAAAATTATTTTTATAAAGAAGAAGAAGTTAAACAAATAGAAGAAGATATTAAGCTCGAAATCGTGCGATTCCTGATGCCGGGTGATGATTCTCAAGAACTTAATGTTTTGACCAGAGAACCAAGTGGAAATCAGTATACTGGATTTTGGAGTTTCATGAAAAAACCAACAGTTAACGCCCGAGAAAAAAACCTAGAGACTCTGCGTAATGAAATATCGCAGGAAATAGTGGTGTATTTGAACTGTGGTTTAATAAGTCCTCAACAAGATCCACTTGTGGCATCTACCTACCCACCTACACACACAAACACACAATAG

Protein

MQRFQKPLSHVLADSTDTESISGTEWSKVDCLLKVMKPLYDATQISCGVKYLTLSMVKPLLFGIINGLNSIEFDYDDSSERGQEFTDNILNVLEVRFCEVDRDIIFKKSTYLDPRYENYFYKEEEVKQIEEDIKLEIVRFLMPGDDSQELNVLTREPSGNQYTGFWSFMKKPTVNAREKNLETLRNEISQEIVVYLNCGLISPQQDPLVASTYPPTHTNTQ

Uniprot

A0A088AAP1   A0A146UVL0   A0A2A3ENZ9   A0A146ZI29   A0A146QW25   G3N6T0   + More
G3PB71   F7EC39   A0A147AD49   A0A146SGR0   J9LBU0   A0A1A8MNK0   A0A2N5VRL8   A0A146ZNJ7   J9KI18   A0A0J7KFP1   Q8T648   A0A147BCT7   A0A3P8YM71   A0A3Q3QVA5   A0A1A8N7N7   A0A2N5V0W0   A0A1S3RQ25   A0A1S3RPV5   A0A1S3QQ03   A0A3Q1FT65   A0A3N0XY52   A0A3B4WU78   A0A1A8GZ86   A0A0P8Y124   A0A1A7ZB88   A0A3N0Y7W7   A0A1S3QRY2   A0A1S3MRB9   A0A1S3QSF5   A0A1S3MR33   A0A1A8G392   A0A2N5SN73   A0A1S3QEK1  

Pubmed

20431018    12733661    29652888    25069045    17994087   

EMBL

GCES01077298    JAR09025.1    KZ288210    PBC32926.1    GCES01020293    JAR66030.1    + More
GCES01126376    JAQ59946.1    AAMC01021912    GCES01009882    JAR76441.1    GCES01106986    JAQ79336.1    ABLF02031820    HAEF01016987    SBR58146.1    PGCJ01000078    PLW52612.1    GCES01018412    JAR67911.1    ABLF02036739    LBMM01008172    KMQ89087.1    AF486809    AAL93203.1    GEGO01006814    JAR88590.1    HAEH01000427    SBR64867.1    PGCJ01000145    PLW43641.1    RJVU01057296    ROK30197.1    HAEC01007697    SBQ75835.1    CH902625    KPU75502.1    HADY01001389    HAEJ01014371    SBP39874.1    RJVU01049825    ROL42306.1    HAEB01018984    SBQ65511.1    PGCJ01000915    PLW14685.1   

Proteomes

UP000005203    UP000242457    UP000007635    UP000008143    UP000007819    UP000235388    + More
UP000036403    UP000265140    UP000261600    UP000087266    UP000257200    UP000261360    UP000007801   

Pfam

PF05699   Dimer_Tnp_hAT        + More
PF02892   zf-BED
PF04937   DUF659
PF14372   DUF4413

Interpro

IPR003656   Znf_BED        + More
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR037220   BED_dom       
IPR036236   Znf_C2H2_sf       
IPR007021   DUF659       
IPR025525   hAT-like_transposase_RNase-H       

SUPFAM

SSF140996   SSF140996        + More
SSF57667   SSF57667       
SSF53098   SSF53098       

ProteinModelPortal

A0A088AAP1   A0A146UVL0   A0A2A3ENZ9   A0A146ZI29   A0A146QW25   G3N6T0   + More
G3PB71   F7EC39   A0A147AD49   A0A146SGR0   J9LBU0   A0A1A8MNK0   A0A2N5VRL8   A0A146ZNJ7   J9KI18   A0A0J7KFP1   Q8T648   A0A147BCT7   A0A3P8YM71   A0A3Q3QVA5   A0A1A8N7N7   A0A2N5V0W0   A0A1S3RQ25   A0A1S3RPV5   A0A1S3QQ03   A0A3Q1FT65   A0A3N0XY52   A0A3B4WU78   A0A1A8GZ86   A0A0P8Y124   A0A1A7ZB88   A0A3N0Y7W7   A0A1S3QRY2   A0A1S3MRB9   A0A1S3QSF5   A0A1S3MR33   A0A1A8G392   A0A2N5SN73   A0A1S3QEK1  

KEGG

105841816    no KO assigned | (RefSeq) zinc finger BED domain-containing protein 1-like

GO

GO:0003677   GO:0046983   GO:0003676   GO:0005524   GO:0008026   GO:0005634   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

221

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16904

Exp number, first 60 AAs:

0.11106

Total prob of N-in:

0.07551

outside

1  -  221

 

 

Pi

147.138957

Theta

115.058731

Tajima's D

0.865964

CLR

0

CSRT

0.619369031548423

Interpretation

Uncertain